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1,000 results • Page 3 of 20
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7
votes
2
replies
913
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
15 months ago by Matthias Zepper 4.6k
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 10 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.2k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
0
votes
2
replies
994
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 17 months ago by 43k • written 19 months ago by • 0
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 12 months ago by 43k • written 18 months ago by • 0
2
votes
1
reply
876
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 16 months ago by 6.4k • written 18 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 12 months ago by 43k • written 19 months ago by 6.2k
2
votes
3
replies
959
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 20 months ago by 22k • written 20 months ago by ▴ 10
19
votes
13
replies
2.7k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.5k • written 20 months ago by ▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 20 months ago by 100k • written 20 months ago by ▴ 70
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 13 months ago by 43k • written 20 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
20 months ago by upasana • 0
3
votes
0
replies
828
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
21 months ago by LauferVA 4.2k
7
votes
14
replies
2.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 17 months ago by 43k • written 22 months ago by ★ 2.5k
2
votes
7
replies
1.3k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 21 months ago by 43k • written 21 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 21 months ago by 4.6k • written 21 months ago by 19k
0
votes
1
reply
639
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 22 months ago by 82k • written 22 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 17 months ago by 43k • written 22 months ago by 4.2k
0
votes
0
replies
754
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
22 months ago by goddy93 • 0
3
votes
1
reply
703
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by • 0
5
votes
2
replies
1.7k
views
Forum: Skills for industry career in bioinformatics
industry
updated 22 months ago by 13k • written 22 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 22 months ago by 9.7k • written 22 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
22 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
810
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
23 months ago by Francesco ▴ 20
3
votes
2
replies
862
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 43k • written 23 months ago by ▴ 50
0
votes
0
replies
760
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 17 months ago by 43k • written 23 months ago by ▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by 43k • written 23 months ago by 2.8k
0
votes
0
replies
652
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 17 months ago by 43k • written 23 months ago by ★ 1.5k
1
vote
3
replies
2.5k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 23 months ago by 3.9k • written 23 months ago by • 0
3
votes
3
replies
955
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 23 months ago by 27k • written 23 months ago by ★ 2.9k
0
votes
0
replies
380
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 17 months ago by 43k • written 23 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 23 months ago by 54k • written 23 months ago by ▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 21 months ago by 43k • written 8.5 years ago by ★ 9.4k
6
votes
8
replies
3.1k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
24 months ago by stan.aanhane ▴ 30
2
votes
3
replies
950
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by 43k • written 24 months ago by ▴ 30
2
votes
2
replies
951
views
Forum: Project ideas
project-ideas
updated 24 months ago by 54k • written 24 months ago by • 0
0
votes
0
replies
586
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
2.0 years ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 23 months ago by 43k • written 2.0 years ago by • 0
2
votes
2
replies
795
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 17 months ago by 43k • written 2.0 years ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
2.0 years ago by Scottie ▴ 10
4
votes
6
replies
1.6k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
2.0 years ago by Matthias Zepper 4.6k
0
votes
0
replies
629
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by 43k • written 2.1 years ago by ▴ 120
0
votes
0
replies
572
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.1 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 15 months ago by 43k • written 8.9 years ago by 100k
0
votes
1
reply
806
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.1 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.6k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 17 months ago by 43k • written 6.6 years ago by 54k
1,000 results • Page 3 of 20
Recent Votes
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
Genome Visualization Tools
Answer: Genome Visualization Tools
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
A: Best de novo assembler for insect genome ?
Comment: sci-RNA-seq
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Recent Replies
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Juke34 8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax? by Mensur Dlakic ★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools by dlera.lozano ▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat by Mensur Dlakic ★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by Ram 43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Ram 43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Prawesh • 0
thanks, it's working now.
Answer: Genome Visualization Tools by GenoMax 142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file by Trivas ★ 1.8k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R by jared.andrews07 ★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran by GenoMax 142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content by noodle ▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
Comment: Where to get the following bed file? by wyuan37 • 0
Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file? by wyuan37 • 0
Thanks! Super helpful.
Answer: Post-imputation QC for input into GWAS analyses by LauferVA 4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
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