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1,000 results • Page
3 of 20
Sort: Rank
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Votes
Replies
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 10 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.1k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
0
votes
2
replies
977
views
Forum:
Best Phd Programs in Usa ( Computational Biology)
computational-biology
drug-design
updated 16 months ago by
Ram
43k • written 19 months ago by
AleLs
• 0
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 11 months ago by
Ram
43k • written 18 months ago by
stelakarayani7
• 0
2
votes
1
reply
867
views
Forum:
Package is not available (for R version XXX)? Manually download and install R packages
installation
package
R
updated 16 months ago by
colindaven
6.4k • written 18 months ago by
JC
▴ 30
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 11 months ago by
Ram
43k • written 19 months ago by
iraun
6.2k
2
votes
3
replies
946
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 19 months ago by
Jeremy Leipzig
22k • written 19 months ago by
mjd79
▴ 10
19
votes
13
replies
2.6k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 19 months ago by
Rob
6.5k • written 19 months ago by
tsomakiank
▴ 40
8
votes
13
replies
2.8k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 19 months ago by
artem barski
• 0 • written 20 months ago by
liorglic
★ 1.4k
4
votes
4
replies
1.4k
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
melissachua90
▴ 60
2
votes
4
replies
1.2k
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 13 months ago by
Ram
43k • written 20 months ago by
telroyjatter
▴ 230
2
votes
4
replies
1.0k
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
20 months ago by
upasana
• 0
3
votes
0
replies
817
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
20 months ago by
LauferVA
4.2k
7
votes
14
replies
2.4k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 20 months ago by
LChart
3.9k • written 20 months ago by
Kermit
▴ 90
4
votes
4
replies
1.4k
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 16 months ago by
Ram
43k • written 22 months ago by
carlopecoraro2
★ 2.5k
2
votes
7
replies
1.3k
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 21 months ago by
Ram
43k • written 21 months ago by
ali
▴ 20
6
votes
3
replies
2.3k
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 21 months ago by
Matthias Zepper
4.5k • written 21 months ago by
i.sudbery
19k
0
votes
1
reply
630
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 21 months ago by
ATpoint
82k • written 21 months ago by
kai.yang2
• 0
4
votes
2
replies
1.9k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 16 months ago by
Ram
43k • written 21 months ago by
LauferVA
4.2k
0
votes
0
replies
742
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
21 months ago by
goddy93
• 0
3
votes
1
reply
694
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 21 months ago by
Ram
43k • written 21 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
1.6k
views
Forum:
Skills for industry career in bioinformatics
industry
updated 21 months ago by
rpolicastro
13k • written 21 months ago by
m.engalla
▴ 10
9
votes
6
replies
1.3k
views
Forum:
Programming languages in industry
programming
language
updated 22 months ago by
Medhat
9.7k • written 22 months ago by
m.monikus
▴ 30
2
votes
6
replies
1.3k
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
22 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
795
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
22 months ago by
Francesco
▴ 20
3
votes
2
replies
849
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 10 months ago by
Ram
43k • written 22 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
755
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 16 months ago by
Ram
43k • written 22 months ago by
pabe
▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 17 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
7
votes
8
replies
1.6k
views
Forum:
Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by
Ram
43k • written 23 months ago by
4galaxy77
2.8k
0
votes
0
replies
645
views
Forum:
Bioinformatics for understanding cancer and other diseases
cancer
omics
updated 16 months ago by
Ram
43k • written 23 months ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
2.5k
views
Forum:
What counts as a valid biological replicate in single cell RNAseq?
statistics
biological
replicates
scRNA-seq
updated 23 months ago by
benformatics
3.9k • written 23 months ago by
david.ferenbach
• 0
3
votes
3
replies
937
views
Forum:
Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany
PostDoc
updated 23 months ago by
Jean-Karim Heriche
27k • written 23 months ago by
German.M.Demidov
★ 2.9k
0
votes
0
replies
376
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 16 months ago by
Ram
43k • written 23 months ago by
user366312
▴ 20
0
votes
2
replies
1.1k
views
Forum:
Bioinformatics algorithm tutorials in C++/C
protein
gene
genome
updated 23 months ago by
Michael
54k • written 23 months ago by
sunnykevin97
▴ 980
34
votes
11
replies
9.3k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 20 months ago by
Ram
43k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
6
votes
8
replies
3.0k
views
Forum:
PC build for Nanopore data analysis
python
PC
pipeline
nanopore-sequencing
23 months ago by
stan.aanhane
▴ 30
2
votes
3
replies
928
views
Forum:
What is difference between Bioinformatics and Data Science?
Data-Science
updated 16 months ago by
Ram
43k • written 23 months ago by
Ssonia
▴ 30
2
votes
2
replies
946
views
Forum:
Project ideas
project-ideas
updated 23 months ago by
Michael
54k • written 23 months ago by
nivedha
• 0
0
votes
0
replies
579
views
Forum:
Beagle5 imputation accuracy
beagle5
DR2
imputation
impute2
impute-info
23 months ago by
ch333
• 0
1
vote
6
replies
1.1k
views
Forum:
Bioinformatics Software Developer job interview steps and what to expect?
interview
software-development
updated 22 months ago by
Ram
43k • written 24 months ago by
d
• 0
2
votes
2
replies
781
views
Forum:
What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS
GWAS
WGS
updated 16 months ago by
Ram
43k • written 24 months ago by
ehsanmofidichelan
• 0
5
votes
5
replies
1.1k
views
Forum:
Best book introducing R programming?
coding
R
24 months ago by
Scottie
▴ 10
4
votes
6
replies
1.5k
views
Forum:
How relevant are read numbers in FastQ headers for paired reads?
header
fastq
number
read
24 months ago by
Matthias Zepper
4.5k
0
votes
0
replies
624
views
Forum:
commonly-used bioinformatics pipeline
Galaxy
updated 16 months ago by
Ram
43k • written 2.0 years ago by
anasjamshed
▴ 120
0
votes
0
replies
565
views
Forum:
Master's topic in Bioinformatics
Bio-informatique
2.0 years ago by
Badji Oumar
• 0
13
votes
15
replies
3.4k
views
8 follow
Forum:
Biostar under spam attack - restrictions added to post content and title
meta
biostars
updated 14 months ago by
Ram
43k • written 8.8 years ago by
Istvan Albert
100k
0
votes
1
reply
784
views
Forum:
Retrieve SCCM data for client software distribution serviceNow
training
servicenow
online
2.0 years ago by
hkrtrainings408
• 0
47
votes
24
replies
6.5k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 16 months ago by
Ram
43k • written 6.5 years ago by
Michael
54k
5
votes
8
replies
2.7k
views
Forum:
SQL-why do we need it in Bioinformatics ?
SQL
Programming
updated 16 months ago by
Ram
43k • written 2.1 years ago by
iibrams07
▴ 10
1,000 results • Page
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Recent Votes
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
A: Deeptools plotHeatmap - Maintain Order of Input BED file
Comment: NGS forensics: how to know if data is fabricated
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
Answer: DNA methylation preprocessing
Comment: NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: gvcf joint calling
by
zihanss
• 0
Thanks for your comment, I get it now.
Answer: ChIP-seq datasets: input samples omitted?
by
ATpoint
82k
In my hands (and from what I know based on many years here) inputs are almost exclusively used during peak calling to correct for loci-spec…
Comment: How to assign cell types after integration in scRNA
by
ATpoint
82k
No difference here. After all you typically want a label per cluster/group, so either subset to the control condition to do the assignment,…
Comment: Differential Expression using Isoseq-supplemented reference transcriptome
by
gaoanwei
• 0
I found the question and ASK the GPT4 turbo
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
gaoanwei
• 0
Your approach seems reasonable and well-informed, though it's perhaps less customary in the field, which could be why you haven't found pap…
Answer: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
It takes 29 seconds to assemble this genome (20 CPUs) with the following statistics: 135 contigs, total 2821177 bp, min 200 bp, max …
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 520
IMO (and unfortunately) there needs to be an effort to develop these algorithms.
Comment: gvcf joint calling
by
Jeremy Leipzig
22k
the samples that are `./.` have no coverage (or not enough to call a genotype) and the `0/0` are homozygous reference
Answer: How many reads for WGS Sequencing?
by
GenoMax
141k
Did you download the complete dataset available from ENA/NCBI SRA? This is an older dataset (from 2012) with a total of 1146212 reads and 1…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
by
zihanss
• 0
Hello, I want to know that why my gVCF files have "./." besides "0/0", "1/1"? Thanks
Comment: gvcf joint calling
by
zihanss
• 0
![enter image description here][1] [1]: /media/images/15eedc1a-b2c6-4966-be39-b5173dab And I confused with the file that has "./." and…
Comment: gvcf joint calling
by
zihanss
• 0
![enter image description here][1] [1]: /media/images/16fd502c-4e01-4f56-8562-0e0d4aac Okay, this is the merged gVCF file.
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★ 27k
Enzymes under the umbrella of `1.1.1.-` work `with NAD(+) or NADP(+) as acceptor`. That only tells you about their cofactors, but not about…
Comment: NGS forensics: how to know if data is fabricated
by
dsull
★ 5.9k
I don't think people have undertaken the effort to create an anomaly detector for RNAseq -- people's efforts are dedicated towards developi…
Comment: NGS forensics: how to know if data is fabricated
by
dsull
★ 5.9k
I'd say post on pubpeer -- it's the best forum for this sort of discussion. As for what additional analysis I recommend: I'd say look at s…
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