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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
24 months ago by PeterC_NCBI ▴ 410
10
votes
2
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3.3k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 2.3 years ago by 43k • written 9.6 years ago by 161k
1
vote
2
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1.7k
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News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
14
votes
2
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5.5k
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News: Open Targets, identifying targets for drug development in the treatment of diseases.
database Drug open-targets
updated 12 months ago by 43k • written 7.9 years ago by ★ 5.2k
4
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2
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3.1k
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News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 13 months ago by 43k • written 8.6 years ago by ★ 2.2k
1
vote
2
replies
1.0k
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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
0
votes
2
replies
693
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 10 months ago by 43k • written 4.5 years ago by 23k
0
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2
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3.5k
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News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
2
votes
2
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1.4k
views
News: R 3.2.3 is out
R
updated 13 months ago by 43k • written 8.3 years ago by ★ 5.1k
0
votes
2
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928
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News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
1
vote
2
replies
2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
vote
2
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760
views
News: Ensembl reduced functionality, early March
ensembl
updated 10 months ago by 43k • written 4.3 years ago by 23k
2
votes
2
replies
737
views
News: Free online seminars/journal club
seminars journal-clubs
updated 13 months ago by 43k • written 3.8 years ago by ▴ 40
2
votes
2
replies
742
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
2.2 years ago by SanjidaR_NCBI ▴ 60
13
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2
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1.5k
views
News: Thank you Biostars!
meta
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
4
votes
2
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1.3k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 10 months ago by 43k • written 4.6 years ago by ★ 1.0k
11
votes
2
replies
2.4k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.4 years ago by 43k • written 9.7 years ago by 23k
6
votes
2
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2.6k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 12 months ago by 43k • written 7.4 years ago by 11k
8
votes
2
replies
781
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
23 days ago by David Langenberger 11k
2
votes
2
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1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
votes
2
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1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
votes
2
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1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
6
votes
2
replies
1.8k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 14 months ago by 43k • written 11.5 years ago by 11k
3
votes
2
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591
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
4 weeks ago by Johannes W. Dietrich • 0
6
votes
2
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2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
2
votes
2
replies
2.0k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 14 months ago by 43k • written 10.6 years ago by 161k
2
votes
2
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1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
votes
2
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887
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 13 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
2
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717
views
News: Seascape Genomics in R
Genomics Seascape R
updated 16 months ago by 43k • written 18 months ago by ★ 2.5k
0
votes
2
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1.7k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
3
votes
2
replies
745
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
1
vote
2
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1.8k
views
News: New chat server (Discord) for bioinformatics
community
15 months ago by Samuel Lampa ★ 1.3k
2
votes
2
replies
2.7k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 13 months ago by 43k • written 8.9 years ago by 35k
13
votes
2
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3.1k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 14 months ago by 43k • written 11.6 years ago by 100k
6
votes
2
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1.5k
views
News: Biostars On The Genome Technology Cover
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
2
votes
2
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2.2k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 12 months ago by 43k • written 7.5 years ago by 26k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
2
votes
2
replies
1.1k
views
News: Bioinformatics Solutions on AWS
Cloud AWS
updated 2.8 years ago by 43k • written 3.0 years ago by ▴ 20
11
votes
2
replies
3.7k
views
News: Coursera: Computational Molecular Evolution
course
updated 14 months ago by 43k • written 10.9 years ago by 161k
1
vote
2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
3
votes
2
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1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.3 years ago by • 0
0
votes
2
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2.1k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.4 years ago by 11k
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
5
votes
2
replies
3.7k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 14 months ago by 43k • written 10.5 years ago by ★ 2.4k
6
votes
2
replies
2.3k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 14 months ago by 43k • written 10.0 years ago by ▴ 380
12
votes
2
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451
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
18 days ago by David Langenberger 11k
0
votes
2
replies
1.9k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
0
votes
2
replies
210
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 11 months ago by 43k • written 4.8 years ago by • 0
2
votes
2
replies
1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
2
votes
2
replies
1.9k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 22 months ago by 43k • written 9.0 years ago by ★ 1.6k
1,000 results • Page 5 of 20
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Comment: NGS forensics: how to know if data is fabricated
Answer: How to use limma to find differentially expressed genes in response to a continu
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How to input margin to UpsetR figure
Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing? by dsull ★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing? by dsull ★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file? by chujie • 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing? by LauferVA 4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
Comment: PCA plot by LauferVA 4.2k
Without more context, we cannot interpret this PCA plot. There are many possibilities. In addition, this question is basic enough that it w…
Comment: NGS forensics: how to know if data is fabricated by Jeremy Leipzig 22k
i have the name ready: out**liar**
Comment: What does it mean single base resolution in sequencing? by GenoMax 141k
Sequencing by hybridization (https://en.wikipedia.org/wiki/Sequencing_by_hybridization ) is likely not giving you single base resolution. B…
Comment: Fetch table from clinvar database according to a list of rsid by ashaneev07 ▴ 20
Hii... i have updated the script in python..But, still getting no data found. Actually the data is there, i have print the parsed html file…
Comment: How to assign cell types after integration in scRNA by ATpoint 82k
https://bioconductor.org/books/release/OSCA.multisample/using-corrected-values.html
Comment: Downloading full alignments from Pfam by GenoMax 141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing? by GenoMax 141k
> What does clipped Fastq mean? Probably means that NCBI has already scanned and trimmed adapter sequencers. > both forward and revers…
Comment: How many reads for WGS Sequencing? by GenoMax 141k
You can use the default `adapters.fa` file included in the `resources` folder of [**BBMap suite**][1] (program to use is `bbduk.sh`) or a p…
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