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1,000 results • Page
3 of 20
Sort: Votes
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Views
Votes
Replies
10
votes
12
replies
1.8k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
4.8 years ago by
msimmer92
▴ 300
10
votes
5
replies
2.3k
views
error with samtools
RNA-Seq
updated 6.8 years ago by
Biostar
20 • written 7.0 years ago by
mra8187
▴ 20
10
votes
7
replies
1.1k
views
Better DE analytic tools
RNA-Seq
DE tools
Bayesian empirical approach
5.6 years ago by
mhyunjunkang
▴ 110
10
votes
5
replies
6.9k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 15 months ago by
Ram
41k • written 8.3 years ago by
seta
★ 1.8k
10
votes
6
replies
2.7k
views
which language to use for such a bioinformatics web services infrastructure?
web-services
java
updated 8 months ago by
Ram
41k • written 8.5 years ago by
lait
▴ 180
10
votes
5
replies
5.4k
views
Intron Retention And Alternative 5'3' Splice Site Identification
updated 9.8 years ago by
Biostar
20 • written 12.6 years ago by
Arun
2.4k
10
votes
8
replies
2.1k
views
Blast scores...two annotations for the same piece of sequence
alignment
updated 17 months ago by
Ram
41k • written 8.7 years ago by
friasoler
▴ 50
10
votes
13
replies
5.5k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
6.8 years ago by
Vasu
▴ 740
10
votes
10
replies
3.6k
views
Parameter optimization STAR
RNA-Seq
5.8 years ago by
XBria
▴ 90
9
votes
13
replies
3.1k
views
Python Script to map reads to reference sequence
sequence
python
mapping
script
reference sequence
4.6 years ago by
Fid_o
▴ 40
9
votes
5
replies
1.1k
views
how to retrieve all proteins related to cancer
proteins
7.5 years ago by
Learner
▴ 270
9
votes
7
replies
3.2k
views
Aligning Miseq With Deletions >10 Bases
alignment
miseq
next-gen
updated 10.4 years ago by
Biostar
20 • written 10.9 years ago by
Leszek
4.2k
9
votes
13
replies
1.5k
views
SNP's and Gene?
SNP
gene
4.1 years ago by
imgapgenomika
▴ 10
9
votes
9
replies
4.2k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq
TSS
V-plot
4.0 years ago by
nanoide
▴ 110
9
votes
16
replies
1.3k
views
I am trying to select some reference genome region of a bam file, but got an error
SAMTOOLS
updated 3.3 years ago by
lieven.sterck
14k • written 3.3 years ago by
schlogl
▴ 160
9
votes
1
reply
5.9k
views
Why does MACS2 report multiple records for the same peak region?
ChIP-Seq
macs
macs2
updated 15 months ago by
Ram
41k • written 8.1 years ago by
James Ashmore
★ 3.4k
9
votes
7
replies
958
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 18 months ago by
Ram
41k • written 19 months ago by
2138493o
▴ 20
9
votes
10
replies
3.3k
views
generation of heat map by excel data.
R
excel
heatmap
updated 5.4 years ago by
Ram
41k • written 5.5 years ago by
abhilashreddy495
▴ 10
9
votes
13
replies
14k
views
GC Content of Fasta file --- Python Help
sequence
6.8 years ago by
Patrick Brennan
▴ 50
9
votes
13
replies
14k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 5 months ago by
Ram
41k • written 5.2 years ago by
Shahzad
▴ 30
9
votes
7
replies
5.4k
views
fisher test with multiple samples
statistics
updated 2.0 years ago by
Ram
41k • written 9.4 years ago by
juncheng
▴ 220
9
votes
7
replies
2.3k
views
Averaging duplicates of a gene in RNA-Seq dataset
expression
differential
average
R
rna-seq
updated 2.4 years ago by
biomon
▴ 60 • written 2.4 years ago by
mohammedtoufiq91
▴ 230
9
votes
11
replies
6.4k
views
microRNA Illumina Sequencing - Very low alignment rate
sequencing
Assembly
RNA-Seq
updated 22 months ago by
Ram
41k • written 9.3 years ago by
wynstep
▴ 90
9
votes
6
replies
1.1k
views
Genotype meaning
genotype
BL21
2.4 years ago by
A_heath
▴ 160
9
votes
12
replies
6.8k
views
How to align reads on reference using python?
genome
sequence
gene
sequencing
updated 5.0 years ago by
WouterDeCoster
47k • written 5.0 years ago by
doramora
▴ 10
9
votes
10
replies
2.5k
views
About GATK4 Mutect2 runtime (Whole Exome seq)
GATK
Whole Exome Sequencing
Mutect2
2.9 years ago by
kwanghoon
▴ 20
9
votes
3
replies
7.0k
views
Statistical Distributions In Rna-Seq Data Analysis
statistics
rna
updated 4.7 years ago by
Biostar
20 • written 11.7 years ago by
Ngsnewbie
▴ 380
9
votes
13
replies
1.7k
views
Archeological DNA sample - how to analyze
unmapped
paleogenomics
archeogenomics
Assembly
22 months ago by
Aruna
▴ 30
9
votes
2
replies
502
views
Answer needed urgently
Deep
updated 14 months ago by
Mensur Dlakic
★ 25k • written 14 months ago by
Deepak
• 0
9
votes
16
replies
1.7k
views
feature extraction from SNPs in R
R
gene
sequence
SNP
5.1 years ago by
bioinfo456
▴ 150
9
votes
20
replies
3.8k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 8 months ago by
Ram
41k • written 5.3 years ago by
marongiu.luigi
▴ 690
9
votes
6
replies
3.3k
views
SOAPaligner 2.21 - does it replace all Ns by Gs in reads?
Soapaligner
alignment
updated 2.2 years ago by
Ram
41k • written 9.5 years ago by
Philipp Bayer
8.1k
9
votes
10
replies
2.2k
views
why there is 0/0 genotyp in VCF file?
VCF
GATK
Variant
4.3 years ago by
star
▴ 350
9
votes
4
replies
22k
views
What is the definition of "read depth" vs "coverage"? (again...)
coverage
depth
read depth
6.6 years ago by
ariel.balter
▴ 220
9
votes
7
replies
2.0k
views
Sorting BLAST output files together?
blast
7.6 years ago by
zgayk
▴ 90
9
votes
10
replies
1.6k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 2.4 years ago by
i.sudbery
18k • written 2.4 years ago by
c_u
▴ 520
9
votes
11
replies
4.3k
views
please someone help me with running mirdeep2
software error
mirdeep2
perl
7.2 years ago by
fi1d18
★ 4.2k
9
votes
7
replies
3.6k
views
7 follow
Are 2 replicates per sample sufficient for RNA-seq data analysis?
RNA-Seq
R
Ngs
5.8 years ago by
Arindam Ghosh
▴ 510
9
votes
13
replies
2.3k
views
Reannotating a gene: Identifying translation and transcription start sites
RNA-Seq
genome
gene
6.9 years ago by
rh5118
▴ 40
9
votes
6
replies
2.9k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
7.0 years ago by
scchess
▴ 640
9
votes
7
replies
2.2k
views
Merging BWT indices for BWA
BWA
BWT
read aligner
merge
5.1 years ago by
rgc255
▴ 60
9
votes
27
replies
7.0k
views
How do I use Glimmer 3.02?
sequencing
updated 4.9 years ago by
ojelizodun
• 0 • written 5.7 years ago by
nattzy94
▴ 50
9
votes
7
replies
3.4k
views
How to use Galaxy to obtain read counts from SRA files
Galaxy
read count
SRA file
7.2 years ago by
statfa
▴ 740
9
votes
4
replies
1.2k
views
Is there any method to run tophat ?
RNA-Seq
updated 5.2 years ago by
Biostar
20 • written 5.3 years ago by
Chan
• 0
9
votes
16
replies
3.5k
views
6 follow
covert SAM to full length fasta
fasta
SAM
updated 8 months ago by
Ram
41k • written 5.3 years ago by
marongiu.luigi
▴ 690
9
votes
7
replies
5.1k
views
How to combine a different sources of pathway database (KEGG, BioCarta) for Pathway analysis.
Pathway
enrichment analysis
GWAS
pathway analysis
7.4 years ago by
kmsh410
▴ 40
9
votes
2
replies
5.2k
views
Biopython Import Error
biopython
updated 11.5 years ago by
Michael Kuhn
5.0k • written 11.5 years ago by
angeles.sepulvedap
• 0
9
votes
7
replies
1.8k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.5 years ago by
BioinfGuru
★ 1.6k
9
votes
13
replies
2.2k
views
single tumor vs multiple normal sample differential gene expression (RNA-Seq ) analysis using DESeq2
RNA-Seq
DESeq2
updated 2.6 years ago by
Ram
41k • written 2.6 years ago by
sumitguptabt
▴ 30
9
votes
14
replies
2.8k
views
vcf to xls wrong columns
vcf
7.3 years ago by
cristina_sabiers
▴ 110
1,000 results • Page
3 of 20
Recent Votes
Comment: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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Answer: How to obtain data on the coordinates of the Exon region from UCSC
Answer: How to obtain data on the coordinates of the Exon region from UCSC
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Converting data from one to another format and repairing gene names turned dates. Yes, great field.
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136k
Yes that should be true. I will let https://www.biostars.org/u/14684/ confirm.
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Thanks for the answe and the linkI used bioinfokit tpm formula to calculate tpm from bulk which is the same formula given in your link: A= …
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I don't understand your plot. Perhaps a legend would help? I also don't know what you mean by "genotype frequency"; is that the ratio of …
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