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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
10
votes
4
replies
1.4k
views
How to pipe samtools mileup with varscan trio caller?
varscan
samtools
pipe
3.3 years ago by
DareDevil
★ 4.3k
10
votes
7
replies
1.3k
views
Can two mates have different file size?
sequencing
fastq
5.7 years ago by
marongiu.luigi
▴ 710
10
votes
9
replies
2.0k
views
How to improve fastq quality based on fastqc output ?
RNA-Seq
6.0 years ago by
Angelique
▴ 10
10
votes
5
replies
2.4k
views
error with samtools
RNA-Seq
updated 7.2 years ago by
Biostar
20 • written 7.4 years ago by
mra8187
▴ 20
10
votes
5
replies
5.6k
views
Intron Retention And Alternative 5'3' Splice Site Identification
updated 10.2 years ago by
Biostar
20 • written 13.0 years ago by
Arun
2.4k
10
votes
8
replies
1.7k
views
File Format - Fasta
sequence
8.1 years ago by
Gabe Anderson
▴ 10
10
votes
15
replies
6.2k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 13 months ago by
Ram
43k • written 5.6 years ago by
marongiu.luigi
▴ 710
10
votes
13
replies
5.8k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
7.2 years ago by
Vasu
▴ 770
10
votes
12
replies
2.0k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
5.2 years ago by
msimmer92
▴ 300
10
votes
10
replies
2.0k
views
Minor allele frequency
GWAS
SNPs
Alleles
updated 5.5 years ago by
Biostar
20 • written 7.4 years ago by
alessandrotestori7
▴ 420
10
votes
6
replies
8.3k
views
Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$modeFraction < 10)) { : missing value where TRUE/FALSE needed"?
fgsea
updated 2.8 years ago by
alserg
▴ 920 • written 2.8 years ago by
gabrielbaldanzi
▴ 10
10
votes
2
replies
2.8k
views
Standalone Blast Issue
blast
11.9 years ago by
chlazaris
• 0
9
votes
13
replies
3.4k
views
Python Script to map reads to reference sequence
sequence
python
mapping
script
reference sequence
5.0 years ago by
Fid_o
▴ 40
9
votes
5
replies
1.2k
views
how to retrieve all proteins related to cancer
proteins
8.0 years ago by
Learner
▴ 280
9
votes
7
replies
3.3k
views
Aligning Miseq With Deletions >10 Bases
alignment
miseq
next-gen
updated 10.8 years ago by
Biostar
20 • written 11.3 years ago by
Leszek
4.2k
9
votes
13
replies
1.6k
views
SNP's and Gene?
SNP
gene
4.5 years ago by
imgapgenomika
▴ 10
9
votes
10
replies
2.8k
views
About GATK4 Mutect2 runtime (Whole Exome seq)
GATK
Whole Exome Sequencing
Mutect2
3.3 years ago by
kwanghoon
▴ 20
9
votes
5
replies
3.9k
views
What's the interpretation behind Pathway enrichment analysis
networks
pathway enrichment analysis
gene
updated 6.6 years ago by
Biostar
20 • written 6.8 years ago by
Chaimaa
▴ 260
9
votes
16
replies
1.9k
views
feature extraction from SNPs in R
R
gene
sequence
SNP
5.5 years ago by
bioinfo456
▴ 150
9
votes
19
replies
2.3k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
4.3 years ago by
schlogl
▴ 160
9
votes
10
replies
1.9k
views
How to use Poisson distribution to get meaningful expression counts?
statistics
rna-seq
updated 2.8 years ago by
i.sudbery
19k • written 2.8 years ago by
c_u
▴ 520
9
votes
4
replies
5.5k
views
How to analyse normalized read count?
RNA-Seq
R
updated 16 months ago by
Ram
43k • written 8.9 years ago by
pbio
▴ 150
9
votes
16
replies
1.5k
views
I am trying to select some reference genome region of a bam file, but got an error
SAMTOOLS
updated 3.7 years ago by
lieven.sterck
15k • written 3.7 years ago by
schlogl
▴ 160
9
votes
13
replies
2.4k
views
Reannotating a gene: Identifying translation and transcription start sites
RNA-Seq
genome
gene
7.3 years ago by
rh5118
▴ 40
9
votes
6
replies
1.3k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
9
votes
7
replies
1.1k
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 23 months ago by
Ram
43k • written 2.0 years ago by
2138493o
▴ 20
9
votes
11
replies
6.6k
views
microRNA Illumina Sequencing - Very low alignment rate
sequencing
Assembly
RNA-Seq
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
wynstep
▴ 90
9
votes
3
replies
7.2k
views
Statistical Distributions In Rna-Seq Data Analysis
statistics
rna
updated 5.1 years ago by
Biostar
20 • written 12.1 years ago by
Ngsnewbie
▴ 380
9
votes
10
replies
5.6k
views
6 follow
Trimmomatic: Higher number of "forward only" than "reverse only" surviving reads
trimming
RNA-seq
updated 4.5 years ago by
nidhi.vijayan13
▴ 30 • written 5.7 years ago by
Lucila
▴ 20
9
votes
9
replies
1.5k
views
Convert mouse amino acid location to genomic location
genome
gene
4.8 years ago by
L. A. Liggett
▴ 120
9
votes
7
replies
1.3k
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 16 months ago by
barslmn
★ 2.1k • written 16 months ago by
Batel
• 0
9
votes
12
replies
7.3k
views
How to align reads on reference using python?
genome
sequence
gene
sequencing
updated 5.4 years ago by
WouterDeCoster
47k • written 5.4 years ago by
doramora
▴ 10
9
votes
7
replies
2.4k
views
Merging BWT indices for BWA
BWA
BWT
read aligner
merge
5.5 years ago by
rgc255
▴ 60
9
votes
13
replies
15k
views
GC Content of Fasta file --- Python Help
sequence
7.2 years ago by
Patrick Brennan
▴ 50
9
votes
7
replies
5.6k
views
fisher test with multiple samples
statistics
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
juncheng
▴ 220
9
votes
14
replies
4.3k
views
Explanation on Paired end single index for RNA seq
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
hothriananya
▴ 70
9
votes
8
replies
1.7k
views
Union of unaligned fastq reads
RNA-Seq
6.9 years ago by
Jeffin Rockey
★ 1.3k
9
votes
2
replies
3.1k
views
GEOquery Problems to Get GEO dataset
Geoquery
8.1 years ago by
Shicheng Guo
★ 9.4k
9
votes
10
replies
2.5k
views
why there is 0/0 genotyp in VCF file?
VCF
GATK
Variant
4.7 years ago by
star
▴ 350
9
votes
11
replies
1.5k
views
6 follow
Split up excel cell into multiple records
excel
byonic
6.8 years ago by
rshipman
▴ 30
9
votes
13
replies
15k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Shahzad
▴ 30
9
votes
13
replies
2.0k
views
Archeological DNA sample - how to analyze
unmapped
paleogenomics
archeogenomics
Assembly
2.3 years ago by
Aruna
▴ 30
9
votes
10
replies
3.4k
views
generation of heat map by excel data.
R
excel
heatmap
updated 5.8 years ago by
Ram
43k • written 5.9 years ago by
abhilashreddy495
▴ 10
9
votes
6
replies
1.9k
views
Question about featureCounts
RNA-Seq
featurecounts
updated 2.7 years ago by
wang-yanfang
• 0 • written 4.6 years ago by
chichaochen
▴ 30
9
votes
11
replies
4.5k
views
please someone help me with running mirdeep2
software error
mirdeep2
perl
7.6 years ago by
zizigolu
★ 4.3k
9
votes
5
replies
495
views
Annotation of Complex Heatmap
complexheatmap
3 months ago by
abiuma
▴ 30
9
votes
7
replies
1.9k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.9 years ago by
BioinfGuru
★ 1.7k
9
votes
6
replies
3.1k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
7.4 years ago by
scchess
▴ 640
9
votes
2
replies
585
views
Answer needed urgently
Deep
updated 19 months ago by
Mensur Dlakic
★ 27k • written 19 months ago by
Deepak
• 0
9
votes
7
replies
2.7k
views
Averaging duplicates of a gene in RNA-Seq dataset
expression
differential
average
R
rna-seq
updated 2.8 years ago by
biomon
▴ 60 • written 2.8 years ago by
mohammedtoufiq91
▴ 250
1,000 results • Page
3 of 20
Recent Votes
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
A: Hard time trying to calculate Allele Frequency and DP from Platypus
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
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Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome
by
Gordon Smyth
★ 7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Answer: Finding batch and outlayers
by
Tigran
• 0
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Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated
by
benformatics
3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue
by
noodle
▴ 540
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue
by
Mensur Dlakic
★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I downloaded the data in two files from the link you provided. With this command: megahit -1 ERR072246_1.fastq.gz -2 ERR072246_2.fastq…
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
If you have Linux the assembly should work on your system, but 8 GB is generally not enough for assembling larger genomes.
Comment: How many reads for WGS Sequencing?
by
Mensur Dlakic
★ 27k
I think you might be getting stuck on less relevant parts of my exercise. The most important point was that nothing is wrong with the data.…
Comment: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
Great comprehensive explanation and overview of the technologies -- with regards to sequencing assays, the one thing I'd add is SNV identif…
Answer: What does it mean single base resolution in sequencing?
by
dsull
★ 5.9k
I think that term means slightly different things in different contexts. For example, it's useful to profile mRNA modifications (e.g. m6a) …
Comment: Cannot process all the reads in a fast5 file?
by
chujie
• 0
Hi, I met the same problem, have you found the solution?
Answer: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
Hi @fe3e6f65 , In a single sentence, the answer to your question can be summarized as, "*the resolution of a genomic technology refers to …
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