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1,000 results • Page
5 of 20
Sort: replies
Rank
Views
Votes
Replies
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.5 years ago by
guillaume.rbt
★ 1.0k
0
votes
15
replies
3.3k
views
how to make a .bam file from fastQ for RNA-seq ion torrent with BBmap
RNA-Seq
6.6 years ago by
genya35
▴ 40
3
votes
15
replies
2.3k
views
RNA Seq Analysis:Feature Counts are zero
RNA-Seq
feature counts
updated 3.9 years ago by
Biostar
20 • written 3.9 years ago by
Genomics
▴ 20
2
votes
15
replies
1.1k
views
Manipulate refseq database
ncbi
database
nt
refseq
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
anasofiamoreira94
▴ 80
11
votes
15
replies
2.8k
views
How do I get the read counts for a specific exon
bam
exon
updated 6.1 years ago by
Ram
43k • written 6.1 years ago by
b10hazard
▴ 30
0
votes
15
replies
2.6k
views
Strategy for generating a consensus sequence for 100 complete bacterial genomes?
consensus seq
mauve
5.9 years ago by
Alec Watanabe
▴ 60
0
votes
15
replies
3.3k
views
bcftools multiple samples
snp
4.5 years ago by
evelyn
▴ 230
0
votes
15
replies
2.2k
views
Chromosome accession numbers correspond to which chromosome?
bam
chromosome
bed
18 months ago by
amy__
▴ 160
3
votes
15
replies
2.0k
views
Overlapping regions in a BED file
regions
BED
Sequence
exons
annotation
22 months ago by
Matej
• 0
1
vote
15
replies
2.8k
views
Copy Number Analysis on single file
CNV
updated 4.7 years ago by
Kevin Blighe
87k • written 4.7 years ago by
user31888
▴ 130
4
votes
15
replies
4.0k
views
Paired-read alignment length from BAM/SAM file
bam
sam
paired-read
alignment
6.9 years ago by
Soumitra Pal
▴ 10
5
votes
15
replies
1.6k
views
NGS Sequencing depths
next-gen
sequencing
gene
7.2 years ago by
sliproach
▴ 10
3
votes
15
replies
3.2k
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker
annotation
snap
gene prediction
genomics
updated 2.6 years ago by
jaredbernard
▴ 20 • written 4.1 years ago by
mrmrwinter
▴ 30
1
vote
15
replies
3.7k
views
Can I use PICARD (SortSam) instead of SAMTOOLS (sort) for sorting bam files in RNAseq pipeline where HISAT2 is used for alignment.
RNA-Seq
software error
sequencing
next-gen
6.0 years ago by
shuksi1984
▴ 60
0
votes
15
replies
2.0k
views
compare two NCBI ftp tables
table
NCBI
updated 2.9 years ago by
Ram
43k • written 2.9 years ago by
Debut
▴ 20
7
votes
15
replies
7.2k
views
6 follow
blastn error - NCBI C++ Exception
assembly
blast
alignment
updated 2.1 years ago by
lieven.sterck
15k • written 3.1 years ago by
sunnykevin97
▴ 980
1
vote
15
replies
3.7k
views
Fastx quality filter
next-gen
RNA-Seq
software error
sequencing
updated 7.4 years ago by
Ram
43k • written 7.4 years ago by
kriti.awasthi23
▴ 10
0
votes
15
replies
3.2k
views
SAMFormatException: Did not inflate expected amount error
WES
updated 2.5 years ago by
greekkey
▴ 20 • written 2.8 years ago by
smrutimayipanda
▴ 20
5
votes
15
replies
1.5k
views
Get list of gene signatures published
bailey
genes
subtype
pancreas
3.3 years ago by
sabin
▴ 50
0
votes
15
replies
2.4k
views
pathway analysis tools for xenopus
pathways
omics
xenopus
updated 7.8 years ago by
EagleEye
7.5k • written 7.8 years ago by
mike
▴ 90
0
votes
15
replies
3.7k
views
Identify genes in a tophat aligned bam/sam file
blast
alignment
rna-seq
gene
updated 16 months ago by
Ram
43k • written 8.9 years ago by
gchaves
• 0
6
votes
15
replies
1.6k
views
Reads partly within an exon
RNA-Seq
6.8 years ago by
benjyrolls
▴ 70
7
votes
15
replies
2.2k
views
very low coverage when mappin genomic DNA
mapping
coverage
DNA
genomic
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
Lila M
★ 1.2k
3
votes
15
replies
5.6k
views
Pairwise sequence alignment with Biojava?
sequence-alignment
biojava
java
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Bioaln
▴ 360
10
votes
15
replies
1.8k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
10 months ago by
Chris
▴ 260
2
votes
15
replies
2.2k
views
to get each covariate with PC loading in PCA
RNA-seq
PCA
5.3 years ago by
Grace_G
▴ 20
7
votes
15
replies
4.3k
views
Biopython Pairwise Alignment output
biopython
needleman
global alignment
4.1 years ago by
tommaso.green
• 0
6
votes
15
replies
3.1k
views
Why GSVA returns a matrix with fewer gene-sets?
microarray
GSVA
updated 2.4 years ago by
Christopher Walker
▴ 70 • written 6.1 years ago by
arronar
▴ 280
5
votes
15
replies
2.1k
views
Sample contamination level over 30%
next-gen
6.6 years ago by
haiying.kong
▴ 360
1
vote
15
replies
4.4k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome
alignment
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Aurelie MLB
▴ 360
1
vote
15
replies
6.0k
views
How to Extract Specific Region on Bam file
Nanopore
HG38
Rna-Seq
Genome
updated 2.9 years ago by
Kevin Blighe
87k • written 2.9 years ago by
santos48
▴ 40
2
votes
15
replies
1.6k
views
How to call all the allele in samples
SNP
6.0 years ago by
Kritika
▴ 260
1
vote
15
replies
1.5k
views
How to reduce my dataset in order to plot it?
correlation
igraph
updated 4.8 years ago by
Biostar
20 • written 4.9 years ago by
pablo
▴ 300
3
votes
14
replies
4.0k
views
TopHat Error Qual length differs from seq length
RNA-Seq
Assembly
software error
alignment
updated 5.7 years ago by
h.mon
35k • written 6.5 years ago by
williamsbrian5064
▴ 510
8
votes
14
replies
2.4k
views
6 follow
Definition of "=" in comparing two genes
sequencing
gene
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
rdorey
• 0
0
votes
14
replies
3.2k
views
DESeq2 output and GO analysis
RNA-Seq
GO
4.9 years ago by
2nelly
▴ 310
0
votes
14
replies
2.2k
views
N50 for de novo assembly result is too short
assembly
sequence
sequencing
updated 2.5 years ago by
vm.higareda
▴ 30 • written 4.3 years ago by
nisrinalulu
▴ 10
2
votes
14
replies
2.6k
views
RNA seq- without a control
RNA-Seq
next-gen
deseq2
updated 6.4 years ago by
Devon Ryan
104k • written 6.4 years ago by
Biocode_user
▴ 30
7
votes
14
replies
4.9k
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
updated 15 months ago by
Jeremy Leipzig
22k • written 15 months ago by
Emoji
▴ 10
7
votes
14
replies
2.1k
views
single-cell exome sequencing pipeline
SNP
exom
single-cell
next-gen
7.5 years ago by
zizigolu
★ 4.3k
1
vote
14
replies
2.3k
views
Extract gRNA sequence using cutadapt
cutadapt
trimming
crispr
sequencing
updated 2 days ago by
GenoMax
142k • written 4.5 years ago by
Swimming bird
▴ 20
9
votes
14
replies
3.1k
views
vcf to xls wrong columns
vcf
7.8 years ago by
cristina_sabiers
▴ 110
7
votes
14
replies
6.0k
views
transcriptome index for Kalisto
RNA-Seq
updated 7.3 years ago by
Biostar
20 • written 7.4 years ago by
1769mkc
★ 1.2k
2
votes
14
replies
1.9k
views
Annotating the multi sample vcf file
vcf
annotation
16 months ago by
Peerzada
• 0
2
votes
14
replies
6.0k
views
Using sam-dump in SRA toolkit to download chr20.bam from NA12878
sratoolkit
sam-dump
updated 10 months ago by
Ram
43k • written 7.1 years ago by
Covux
▴ 10
10
votes
14
replies
5.0k
views
ATAC-seq data and deepTools: Small detail with impact on output
bigwig
read-length
deeptools
ATAC-seq
updated 11 months ago by
Ram
43k • written 4.2 years ago by
gable_works
▴ 50
0
votes
14
replies
1.6k
views
Fastqc error: Cannot encode phred score
RNA-Seq
3.5 years ago by
tanukitries
• 0
9
votes
14
replies
4.3k
views
Explanation on Paired end single index for RNA seq
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
hothriananya
▴ 70
16
votes
14
replies
17k
views
Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters
trimmomatic
RNA-seq
5.9 years ago by
salamandra
▴ 550
2
votes
14
replies
1.6k
views
VCF2MAF structural variant file issue.
VCF2MAF
updated 9 months ago by
Ram
43k • written 9 months ago by
The_PyPanda
▴ 10
1,000 results • Page
5 of 20
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Comment: agilent human all exon sureselct v7 bed file
by
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God bless you man.
Answer: install package
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Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
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thank you, I'll look at these files/documents. .
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