Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,395 results • Page
585 of 2428
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
751
views
Differential expression analysis of TCGA data based on tumor staging
analysis
DEG
TCGA
3.9 years ago by
txtbookir
▴ 30
1
vote
4
replies
1.6k
views
Extract reads used for contigs assembly
assembly
sequencing
RNA-Seq
updated 3.9 years ago by
cpad0112
21k • written 6.2 years ago by
Clet
• 0
0
votes
0
replies
919
views
Plotting PCA chart using biopython
python
matplotlib
biopython
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
ran
• 0
1
vote
4
replies
2.3k
views
How to retrieve KO IDs for a list of genes?
KEGG
database
updated 3.8 years ago by
Mark
★ 1.6k • written 3.9 years ago by
deep771992chanda
▴ 40
0
votes
0
replies
717
views
How to convert .mol files to cdx?
cdx
mol
chemdraw
updated 23 months ago by
Ram
45k • written 3.9 years ago by
itst
• 0
2
votes
4
replies
1.9k
views
What does .bim .bed .fam stands for?
plink
fam
bim
bed
updated 3.8 years ago by
Mark
★ 1.6k • written 3.9 years ago by
Nagy
• 0
3
votes
4
replies
1.6k
views
Chipseq visualization how to draw the figure
peaks
Chipseq
3.8 years ago by
Binghong
▴ 20
1
vote
0
replies
786
views
KEGG pathway draw
KEGG
transcriptome
RNAseq
3.9 years ago by
najibveto
▴ 130
1
vote
1
reply
1.1k
views
So many variants detected.
gatk4
variants
3.8 years ago by
Mehmet
▴ 820
0
votes
0
replies
667
views
How to generate feature Data(fData)
Cicero
scATAC-seq
3.9 years ago by
bill
• 0
4
votes
3
replies
2.8k
views
Creating a variation graph for Giraffe alignment from assemblies
vg
vgteam
updated 3.8 years ago by
Jouni Sirén
▴ 670 • written 3.9 years ago by
Michael
▴ 30
1
vote
2
replies
1.7k
views
Advice on organizing large GSVA heatmap
rnaseq
gsva
heatmap
3.8 years ago by
Morgan S.
▴ 90
5
votes
3
replies
1.6k
views
proportion of variance
variance
gene
SNP
updated 3.8 years ago by
LauferVA
4.7k • written 3.9 years ago by
khatami.mahshid
▴ 30
0
votes
0
replies
1.5k
views
Tutorial:
Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge
kallisto
rnaseq
sleuth
3.9 years ago by
mo
• 0
0
votes
1
reply
990
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 3.5 years ago by
bookorg
▴ 20 • written 3.9 years ago by
avelarbio46
▴ 30
1
vote
12
replies
5.4k
views
7 follow
Error when trying to import GTF files using rtracklayer's import function
annotation
rtracklayer
software error
3.8 years ago by
Marcel
• 0
1
vote
1
reply
2.7k
views
PYMOL: Output Polar Contacts Between Chains to Text File
PyMol
Python
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
berkyalcinkaya55
▴ 10
1
vote
0
replies
641
views
integrative multiomic data
analysis
multiomics
integrative
3.9 years ago by
rob.costa1234
▴ 310
0
votes
5
replies
1.5k
views
Inquiry related to vcf file and formatting
vcf
bcftools
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
rheab1230
▴ 140
0
votes
0
replies
617
views
Difference in alignment length between FASTA and HitTable
FASTA
BLAST
3.9 years ago by
Leah F
• 0
2
votes
2
replies
2.4k
views
Is subtelomeric region and pericentromeric region defined in human genome?
genome
human
pericentromeric
subtelomeric
updated 3.9 years ago by
Yoann Pageaud
• 0 • written 7.8 years ago by
Boboboe
▴ 40
2
votes
1
reply
752
views
blastpgp -b parameter?
blast
updated 3.9 years ago by
Mensur Dlakic
★ 29k • written 3.9 years ago by
Xylanaser
▴ 80
0
votes
3
replies
1.9k
views
Can someone explain the differences between various 1000 genome project and gnomad call sets? Also any straightforward PCA implementation on them?
wgs
updated 3.9 years ago by
Ram
45k • written 3.9 years ago by
rjd254
• 0
0
votes
0
replies
691
views
Job:
Data Stewardship Community Manager
Management
Data
Community
engagement
3.9 years ago by
Hannah
• 0
6
votes
4
replies
1.5k
views
News:
Upcoming online training courses
Python
R
3.9 years ago by
Physalia-courses
★ 2.6k
8
votes
11
replies
2.1k
views
6 follow
Forum:
Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article
opinion
updated 2.3 years ago by
Ram
45k • written 4.7 years ago by
JC
13k
0
votes
4
replies
1.7k
views
How to create a BED12 file defining UTR sequences
Sequences
UTRs
BED12
updated 3.9 years ago by
Carlo Yague
9.0k • written 3.9 years ago by
baldissera152
▴ 10
1
vote
2
replies
1.0k
views
PLINK ASSOC understanding the results
A1
A2
SNP
ASSOC
PLINK
3.9 years ago by
Michal Nevo
▴ 140
4
votes
1
reply
1.1k
views
Tools for Alternative Splicing Events in RNA-Seq analysis
RNA-Seq
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
joe_genome
▴ 50
4
votes
5
replies
1.3k
views
heatmap column(sample) names disordered
heatmap.2
deseq2
Studio
R
updated 3.9 years ago by
cpad0112
21k • written 3.9 years ago by
ziziqolo
▴ 10
0
votes
0
replies
681
views
Sequencing file conversion
seurat
processing
sequence
scATAC-seq
data
CellRanger
3.9 years ago by
bill
• 0
1
vote
2
replies
1.3k
views
Is it normal for RCorrector to remove millions of reads?
filtering
read
RCorrector
Trinity
RNAseq
updated 3.9 years ago by
Dunois
★ 2.9k • written 3.9 years ago by
nina.maryn
▴ 30
0
votes
10
replies
2.3k
views
Replace multiple text with corresponding text
replacement
text
3.9 years ago by
fec2
▴ 50
1
vote
3
replies
1.3k
views
Analysing RNA seq data
rna-seq
annotation
bioconductor
updated 3.9 years ago by
Wakala
▴ 20 • written 3.9 years ago by
windsur
▴ 20
0
votes
0
replies
867
views
no variant remained after GenotypeGVCFs gatk4
GenotypeGVCFs
gatk4
variant
3.9 years ago by
Mehmet
▴ 820
0
votes
0
replies
801
views
Sortmerna error
rrna
rnaseq
sortmerna
3.9 years ago by
Stella
• 0
0
votes
1
reply
867
views
How to select dataset from 1000 genome
1000genomes
vcf
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
pragnapcu
▴ 10
0
votes
0
replies
1.1k
views
Job:
Postdoc position in phylogenomics and evolution of beetles
evolution
beetles
genomics
updated 2.3 years ago by
Ram
45k • written 3.9 years ago by
zyladagmara
• 0
3
votes
1
reply
2.1k
views
%% error in Rstudio
seurat
r
updated 21 months ago by
Ram
45k • written 3.9 years ago by
AbsaR
• 0
0
votes
0
replies
593
views
Mapping transcripts to mitogenome
alignment
3.9 years ago by
wes
▴ 90
3
votes
7
replies
3.2k
views
Read group info
BWA
bwa-mem2
updated 3.9 years ago by
Ishak
▴ 20 • written 3.9 years ago by
priya.bmg
▴ 70
1
vote
1
reply
2.4k
views
Seurat to Trajectory Analysis
scRNA
seurat
Pseudotime
Trajectory
updated 3.9 years ago by
ATpoint
88k • written 3.9 years ago by
AbsaR
• 0
0
votes
0
replies
753
views
scRNAseq STAR create index how to set --sjdbOverhang
scRNAseq
STAR
sjdbOverhang
3.9 years ago by
Binghong
▴ 20
0
votes
6
replies
2.3k
views
Allele frequency calculation
AF
VCF
snp
calc
updated 3.9 years ago by
sbstevenlee
▴ 480 • written 3.9 years ago by
rheab1230
▴ 140
1
vote
0
replies
706
views
Sequence alignment in Subio on personal PC
expression
differential
alignment
raw
analysis
count
sequence
gene
fastq
3.9 years ago by
catalyst
▴ 10
0
votes
0
replies
635
views
What is the best way to publish data from LIMS/ELN to DataLake
ELN
DataLake
Warehouse
LIMS
3.9 years ago by
Kubendra
• 0
0
votes
0
replies
617
views
Codon usage with unknown/unspecified Nucleotides - coRdon
nucleotides
Codon
unspecified
Usage
coRdon
3.9 years ago by
lucas.caue.jacintho
▴ 30
0
votes
1
reply
885
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 14 months ago by
Ram
45k • written 3.9 years ago by
Ashi
▴ 20
0
votes
0
replies
1.7k
views
Job:
Multiple data scientist positions in computational biomedicine
biomedicine
data-science
machine-learning
3.9 years ago by
pandey.gaurav
▴ 200
0
votes
8
replies
2.4k
views
From EC terms to GO terms to GO enrichment
enrichment
EC
terms
GO
3.9 years ago by
margot.27.muller
▴ 30
121,395 results • Page
585 of 2428
Recent Votes
Answer: Should I perform integration to correct batch effects?
Should I perform integration to correct batch effects?
Answer: Batch correction in TNBC epithelial cells
Answer: When should I NOT apply batch correction for my single-cell RNAseq data?
Answer: Should I perform integration to correct batch effects?
Answer: Batch correction in TNBC epithelial cells
Comment: convert raw counts to TPM
Recent Locations •
All
Ghent & Brussels, Belgium,
1 minute ago
USA,
8 minutes ago
United States,
13 minutes ago
United States,
14 minutes ago
Canada,
16 minutes ago
Ireland,
21 minutes ago
Morocco,
23 minutes ago
Recent Awards •
All
Popular Question
to
questionaire
• 0
Popular Question
to
dthorbur
★ 3.0k
Scholar
to
Raony Guimarães
★ 1.5k
Teacher
to
Juke34
9.2k
Popular Question
to
Biomed-jeh
▴ 70
Popular Question
to
Morgan S.
▴ 90
Popular Question
to
htchd
• 0
Recent Replies
Comment: Single-cell RNA Sequencing - transcript abundance estimation using Alevin-Fry
by
Rob
7.1k
The main issue is that there will be an inherent lack of information (due to the aforementioned 3' bias) in tagged-end data. Nonetheless, …
Comment: Y-axis break in Volcano Plot
by
antonioggsousa
3.3k
I am not familiar with the package `EnhancedVolcano`, but based on your code, should not you be able to change the y-axis limits through th…
Answer: Clarification of options --keep-dup: all vs. -f FRAG in MACS3
by
ATpoint
88k
As per the manual, `FRAG` is specific for scATAC-seq while the other option is generic.
Answer: Should I perform integration to correct batch effects?
by
antonioggsousa
3.3k
Hi, Please check my previous answer to a similar post/question on this forum: [When should I NOT apply batch correction for my single-cel…
Answer: Batch correction in TNBC epithelial cells
by
ATpoint
88k
> (1) Is my pipeline correct? Especially re-applying the harmony to the sub-setted the TNBC epithelial cells. You **can** do that. No prob…
Comment: Different comparisons in RNASeq Analysis
by
mbyvcm
▴ 460
My suggestion is that you consider performing what is commonly referred to as a "delta-delta" contrast. You should be able to find plenty o…
Comment: mgl tool index error
by
Mahesh
• 0
no i am simply drag and drop my pdbqt file in GUI
Answer: Best way to install R packages on an HPC?
by
Charles Plessy
★ 2.9k
At my workplace I created a Singularity image that has most of the C/C++ libraries installed, and R's library path pointing to an image-spe…
Comment: Best way to install R packages on an HPC?
by
cfos4698
★ 1.1k
FWIW, I've recently still been running into environment solving issues with conda (even with the incorporated libmamba changes) that mamba …
Comment: How to interpret genomescope to help remove duplicates
by
mohamadelian1996
• 0
Thank you for helping me out. Other related species have genomes ranging between 400 and 700 Mb so the length given here by genomescope see…
Comment: How to interpret genomescope to help remove duplicates
by
GenoMax
152k
What is the expected genome size and ploidy for this organism? Can you post the busco results?
Comment: Is it valid to stack brightfield and fluorescence channels in a CNN input?
by
LChart
5.0k
Not a real answer, but it should be pointed out that the only way to learn contrastive filters across modalities (i.e., fluorescence-only e…
Answer: Is it valid to stack brightfield and fluorescence channels in a CNN input?
by
Mensur Dlakic
★ 29k
I think this is a borderline bioinformatics question, but I'll still attempt to answer. You won't break the computer by merging all three …
Comment: mgl tool index error
by
GenoMax
152k
Are you using command line or some sort of GUI? Post the full command if you are doing this on the command line.
Comment: Snakemake Module Error: string indices must be integers
by
Jesse
▴ 870
But wait, is the idea with modules that you supply a preloaded config for that module, or that you supply a *path* to a separate config, li…
Traffic: 3766 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6