Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
117,001 results • Page
6 of 2341
Sort: Votes
Rank
Views
Votes
Replies
72
votes
48
replies
8.6k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 15 months ago by
Ram
43k • written 13.1 years ago by
User 59
13k
72
votes
48
replies
18k
views
15 follow
Tutorial:
For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs
alignment
bwa
updated 14 months ago by
Ram
43k • written 11.3 years ago by
lh3
33k
72
votes
20
replies
88k
views
15 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl
identifiers
mapping
updated 16 months ago by
Ram
43k • written 13.5 years ago by
Unode
▴ 180
72
votes
18
replies
56k
views
13 follow
Extracting Multiple Fasta Sequences At A Time From A File Containing Many Sequences
fasta
sequence
parsing
perl
updated 13.6 years ago by
Peter
6.0k • written 13.6 years ago by
Sarah
▴ 110
72
votes
71
replies
31k
views
17 follow
Tool:
EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
volcano-plot
bioconductor
ggplot2
ggrepel
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Kevin Blighe
88k
72
votes
12
replies
4.3k
views
7 follow
Does Pre-Publishing Open Source Algorithms Hurt Chances Of Getting Published?
publication
algorithm
updated 22 months ago by
Ram
43k • written 12.7 years ago by
Martijn Van Iersel
▴ 570
72
votes
28
replies
6.4k
views
10 follow
Forum:
Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services
ethics
misconduct
updated 22 months ago by
Ram
43k • written 9.3 years ago by
Angle45
▴ 90
71
votes
15
replies
49k
views
10 follow
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk
minor
major
reference
alleles
written 6.1 years ago by
m98
▴ 420
71
votes
16
replies
91k
views
12 follow
What Does Samtools Flagstat Results Mean?
rna
samtools
mouse
updated 2.1 years ago by
Pierre Lindenbaum
161k • written 12.7 years ago by
Sakti
▴ 510
70
votes
19
replies
5.6k
views
13 follow
Forum:
Thrown Into A Bioinformatics Position
computational-analysis
updated 22 months ago by
Ram
43k • written 8.6 years ago by
System
▴ 170
70
votes
15
replies
16k
views
12 follow
Transcription Factor Enrichment
transcription
transcript
sequence
enrichment
updated 7.6 years ago by
jin
▴ 80 • written 13.6 years ago by
Dave Bridges
★ 1.4k
70
votes
33
replies
18k
views
18 follow
Choosing Random Set Of Seqs From Larger Set
random
fasta
updated 2.0 years ago by
Ram
43k • written 12.2 years ago by
razor
▴ 190
70
votes
12
replies
30k
views
8 follow
Drug to Target/Gene/Protein Interaction Databases
protein
target
database
drug
gene
updated 2.7 years ago by
Ram
43k • written 12.3 years ago by
Wayne
★ 1.0k
70
votes
5
replies
11k
views
8 follow
Tutorial:
Bioinformatics For Metagenomic Analyses
QC
taxonomy
metagenomics
updated 2.1 years ago by
Ram
43k • written 10.1 years ago by
umer.zeeshan.ijaz
★ 1.8k
70
votes
16
replies
10k
views
11 follow
Creating A New Bioinformatics Unit
core
career
updated 15 months ago by
Ram
43k • written 12.9 years ago by
Israel Barrantes
▴ 790
70
votes
29
replies
15k
views
13 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 9 weeks ago by
jkbonfield
★ 1.2k • written 5.2 years ago by
finswimmer
16k
69
votes
25
replies
7.1k
views
16 follow
How Do You Explain What You Do To The Guy On The Street Or Your Mum?
general
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Dave Gerrard
▴ 190
69
votes
22
replies
40k
views
17 follow
Plotting Density Of Snps On Chromosomes
snp
snp
plot
updated 6.8 years ago by
kaixian110
• 0 • written 12.2 years ago by
Leszek
4.2k
69
votes
39
replies
4.7k
views
14 follow
Forum:
Preparation for Bioinformatics.SE closing
meta
biostars
updated 12 months ago by
Ram
43k • written 7.0 years ago by
John
13k
69
votes
13
replies
37k
views
8 follow
How Do People Go About Pubmed Text Mining
pubmed
text
updated 12.9 years ago by
Chris Evelo
10k • written 12.9 years ago by
Lyco
★ 2.3k
69
votes
17
replies
39k
views
12 follow
Transform a GTF file into a data frame in R
R
RNA-Seq
GTF
updated 14 months ago by
Ram
43k • written 6.7 years ago by
biomagician
▴ 410
68
votes
22
replies
8.0k
views
16 follow
Forum:
Learning Python: list of resources
python
updated 13 months ago by
Ram
43k • written 7.6 years ago by
dago
★ 2.8k
68
votes
23
replies
36k
views
16 follow
How Do I Do Simple Go Term Lookup Given A Gene (Or Mrna) Identifier?
gene
annotation
database
updated 3.1 years ago by
Ram
43k • written 14.0 years ago by
Ryan Thompson
★ 3.6k
68
votes
48
replies
8.9k
views
16 follow
Forum:
Stranger Things: unexpected limitations of popular tools
samtools
hisat2
updated 12 months ago by
Ram
43k • written 6.8 years ago by
Istvan Albert
100k
68
votes
18
replies
131k
views
14 follow
from .BAM to .BAI using samtools
next-gen-sequencing
samtools
updated 3 months ago by
Pierre Lindenbaum
161k • written 9.6 years ago by
Kizuna
▴ 870
68
votes
40
replies
6.5k
views
11 follow
Can We Agree On A Short Twitter Hashtag For Nextgen Sequencing?
next-gen
sequencing
sequencing
updated 12.6 years ago by
pmenzel
▴ 310 • written 12.6 years ago by
Samuel Lampa
★ 1.3k
68
votes
6
replies
28k
views
8 follow
What Is A "Spot" In Sra Format
sra
fastq
format
updated 15 months ago by
Ram
43k • written 12.7 years ago by
Daniel Standage
4.1k
68
votes
25
replies
16k
views
12 follow
Tool:
sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq
SRA
updated 6 months ago by
GenoMax
142k • written 5.2 years ago by
Phil Ewels
★ 1.4k
68
votes
18
replies
73k
views
17 follow
Project For A Beginner Bioinformatics Student
project
java
updated 22 months ago by
Ram
43k • written 12.5 years ago by
And
▴ 240
68
votes
5
replies
22k
views
8 follow
Can someone please explain in simple terms how DESeq2 works?
DESeq2
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
BioStars1993
▴ 130
68
votes
23
replies
49k
views
8 follow
extract dendrogram cluster from pheatmap
R
updated 8 weeks ago by
Getnet Tesfaw
• 0 • written 6.5 years ago by
1769mkc
★ 1.2k
67
votes
17
replies
23k
views
15 follow
What Are The 'Copy Number Detection' Tools Out There For Exome Capture Ngs Data.
cnv
copynumber
next-gen
sequencing
variant
structural
updated 2.2 years ago by
Ram
43k • written 12.5 years ago by
Prateek
★ 1.0k
67
votes
15
replies
33k
views
14 follow
Rna-Seq Pipeline
pipeline
next-gen-sequencing
rna
rna-seq
updated 12 months ago by
Ram
43k • written 14.0 years ago by
brentp
24k
67
votes
6
replies
26k
views
7 follow
Tutorial:
Rna-Seq Review Papers
RNA-seq
papers
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
67
votes
40
replies
9.7k
views
12 follow
Forum:
I want to re-open the old debate: python or perl ?
perl
python
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Gabriel R.
★ 2.9k
67
votes
21
replies
6.1k
views
8 follow
Forum:
Meta: Markdown in Biostars (now enabled)
meta
14 months ago by
Ram
43k
67
votes
13
replies
13k
views
12 follow
Good Books And Resources For Figuring Out Biostatistics?
statistics
books
updated 2.9 years ago by
Ram
43k • written 12.9 years ago by
Adamc
▴ 680
67
votes
9
replies
12k
views
Rna-Seq: Novel Transcripts Found. What Next?
rna-seq
updated 11.0 years ago by
Devon Ryan
104k • written 11.0 years ago by
jobinv
★ 1.1k
66
votes
19
replies
51k
views
17 follow
Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
fastq
updated 11 months ago by
Ram
43k • written 11.3 years ago by
14134125465346445
★ 3.6k
66
votes
23
replies
12k
views
13 follow
How To Get Started In Bioinformatics?
books
updated 7.4 years ago by
jp
▴ 120 • written 14.2 years ago by
Oli
▴ 180
66
votes
25
replies
6.7k
views
13 follow
Data Selection With/Without Databases (Large Data Sets, Orms, And Speed)
database
python
data
updated 11.2 years ago by
kwete90
• 0 • written 13.1 years ago by
Sequencegeek
▴ 740
66
votes
8
replies
16k
views
7 follow
How Are Rna-Seq Transcripts Assigned?
rna
cufflinks
isoform
rna-seq
updated 9.8 years ago by
Malachi Griffith
20k • written 12.3 years ago by
Dave Bridges
★ 1.4k
66
votes
9
replies
111k
views
10 follow
Blog:
Gene expression units explained: RPM, RPKM, FPKM and TPM
gene-expression
RNA-Seq
updated 15 months ago by
Ram
43k • written 6.7 years ago by
Renesh
★ 2.2k
66
votes
22
replies
24k
views
9 follow
Finding Gene Symbol Synonyms
annotation
updated 2.3 years ago by
Ram
43k • written 14.0 years ago by
Mike Dewar
★ 1.6k
66
votes
9
replies
49k
views
7 follow
Tutorial:
Reference Assembly - Mapping Reads To A Reference Genome
reference
samtools
mapping
bwa
updated 15 months ago by
Ram
43k • written 10.9 years ago by
Joseph Hughes
★ 3.0k
66
votes
19
replies
23k
views
13 follow
Online Bioinformatics Training Options
training
updated 11.4 years ago by
parvan.zahra
• 0 • written 12.2 years ago by
John
★ 1.5k
66
votes
43
replies
27k
views
23 follow
Ngs - Huge (Fastq) File Parsing - Which Language For Good Efficiency ?
next-gen
sequencing
parsing
fastq
programming
updated 2.3 years ago by
Ram
43k • written 13.3 years ago by
toni
★ 2.2k
66
votes
39
replies
7.5k
views
13 follow
What Do You Consider The Most Trivial And The Most Challenging Tasks In Your Particular Field Of Work?
career
subjective
updated 3.1 years ago by
Ram
43k • written 14.2 years ago by
Marcos De Carvalho
▴ 310
66
votes
21
replies
6.9k
views
18 follow
Forum:
Is there anyone who was a pure biologist?
next-gen
updated 14 months ago by
Ram
43k • written 10.1 years ago by
Chong Tang
▴ 100
66
votes
10
replies
109k
views
6 follow
Fold change - a final explanation
RNA-Seq
updated 3.7 years ago by
naloy
▴ 10 • written 5.6 years ago by
Sebastian Hesse
▴ 340
117,001 results • Page
6 of 2341
Recent Votes
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
Recent Locations •
All
South Korea,
just now
Poland,
1 minute ago
France,
1 minute ago
Pakistan,
1 minute ago
Vietnam,
5 minutes ago
China,
6 minutes ago
Chile,
9 minutes ago
Recent Awards •
All
Scholar
to
dsull
★ 6.0k
Popular Question
to
finswimmer
16k
Popular Question
to
Ezequiel
• 0
Popular Question
to
alanh
▴ 170
Scholar
to
Peter
6.0k
Popular Question
to
ashkan
▴ 160
Supporter
to
Umer
▴ 50
Recent Replies
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot
by
bk11
★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool
by
GenoMax
142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
bk11
★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated
by
alanh
▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data?
by
Zhenyu Zhang
★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Traffic: 1482 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6