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121,903 results • Page 630 of 2439
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2
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7
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4.2k
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Differential Gene expression between low survival and high survival samples from RNAseq
rna-seq R DEG Survival
updated 4.3 years ago by • 0 • written 7.5 years ago by ▴ 70
1
vote
4
replies
3.1k
views
Install R package fgsea: Error in download.file
bioconductor R package fgsea
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 250
0
votes
1
reply
756
views
Use part of the name of the input file in the Snakemake
snakemake
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 100
0
votes
0
replies
848
views
Job: Postgraduate Scholarship in Bioinformatics and Liver Cancer Genomics
NGS Cancer_genomics scRNA-seq Single-cell_sequencing Liquid_biopsy
4.2 years ago by waihungh ▴ 20
0
votes
1
reply
676
views
Chimpanzee genome for APE113 and APE114
Chimpanzee APE113
updated 4.3 years ago by 15k • written 4.3 years ago by • 0
0
votes
3
replies
1.7k
views
Using Linear Regression on Genotype and Expression data
Regression SNP Machine Learning Genotype
updated 4.3 years ago by ▴ 110 • written 4.3 years ago by ▴ 30
2
votes
3
replies
1.6k
views
what is the corelation between Elastic net method and GAIA method?
genes prediction
updated 4.2 years ago by 89k • written 4.3 years ago by ▴ 260
1
vote
2
replies
1.9k
views
Getting peak (bed narrowPeak) from signals (Wig)
data ChIP-seq analysis
4.3 years ago by arsala521 ▴ 60
0
votes
1
reply
969
views
Supernova 10X Genomics - estimation of gap length
gap_length_estimation 10X_Genomics genome_assembly Supernova_assembler
4.2 years ago by MH85 ▴ 20
0
votes
0
replies
771
views
Error: SLAC of HyPhy tool Galaxy.org
hyphy galaxy slac
4.3 years ago by frk • 0
0
votes
0
replies
742
views
Minimum size of input genes list and number of samples for fgsea
gsea fgsea
4.3 years ago by confused but trying • 0
0
votes
4
replies
1.3k
views
PRIDE ENSEMBL
ensembl peptides pride
4.3 years ago by desptsp • 0
0
votes
5
replies
1.4k
views
Data visualisation, miRNA and mRNA network with pair data
mirna R network mrna
updated 4.3 years ago by 11k • written 4.3 years ago by • 0
4
votes
2
replies
2.2k
views
You can't just liftover from one build to another using only coordinates correct?
liftover
updated 4.3 years ago by ▴ 10 • written 4.7 years ago by ▴ 890
0
votes
0
replies
1.6k
views
Job: Product Manager for Online Bioinformatics Resources
product-manager
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 90
2
votes
1
reply
812
views
Gradient Descent for gene degradation
linearRegression gradientdescent R degradation scRNA
updated 4.2 years ago by 36k • written 4.3 years ago by ▴ 20
3
votes
10
replies
2.3k
views
how to delete a file 3 months after downloading it in python
python pandas
updated 3.3 years ago by 89k • written 4.3 years ago by ▴ 20
1
vote
1
reply
748
views
Control-FREEC significance
Control-FREEC KolmogorovSmirnov CNVs significance Wilcoxon
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ▴ 40
2
votes
2
replies
1.4k
views
What is the general philosophy of softwares for searching mutations ?
software mutations bacteria genome archaea
4.3 years ago by Student ▴ 30
4
votes
3
replies
1.7k
views
Interpretation of reads
interpretation scRNA-seq RNA-seq count-matrix amplification
updated 4.3 years ago by ★ 7.7k • written 4.3 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Duplicate ID in plink
GWAS plink
updated 4.3 years ago by 2.9k • written 4.3 years ago by ▴ 50
0
votes
3
replies
2.8k
views
Velocyto: Not found cell and umi barcode in entry of the bam file
velocyto scRNA-seq UMI RNA
4.2 years ago by bs58 ▴ 10
0
votes
0
replies
1.7k
views
What is Lfq intensity?
Proteomic
4.3 years ago by Lital • 0
1
vote
2
replies
2.5k
views
LOW BUSCO Score for De novo genome assembly
illumina genome assembly reads rna-seq
updated 4.3 years ago by ▴ 600 • written 4.3 years ago by ▴ 160
0
votes
2
replies
2.5k
views
hg38 coordinates for centromeric, subtelomeric and telomeric regions
hg38
4.3 years ago by masaver ▴ 20
0
votes
2
replies
1.1k
views
Where I can download o/e scores in gnomad files?
gnomad pLI oe
4.2 years ago by stb1132 • 0
0
votes
0
replies
846
views
Job: Data stewardship Community Manager
stewardship Data data management
4.3 years ago by Erin Haskell ▴ 470
0
votes
0
replies
789
views
Job: Data Stewardship - Trainer and course developer (two positions)
stewardship data training Data management
4.3 years ago by Erin Haskell ▴ 470
0
votes
1
reply
3.2k
views
how to color positive and negative correlation in Cytoscape
Cytoscape
updated 4.3 years ago by • 0 • written 4.3 years ago by ▴ 470
0
votes
0
replies
673
views
Analyzing differential expression of host genes in RNA-Virus infected cells?
DEG Virus RNA-seq
4.3 years ago by DIG • 0
17
votes
14
replies
3.2k
views
6 follow
Orthologs vs PFAM
ortholog pfam
updated 4.1 years ago by 15k • written 4.3 years ago by ▴ 140
0
votes
2
replies
1.3k
views
Is it correct to merge two raw CEL datasets and then perform quality control, background correction, and normalization on it?
R microarray affymetrix batch-effect quality-control
updated 17 months ago by 45k • written 4.3 years ago by ▴ 80
0
votes
5
replies
1.2k
views
problem: i try to merge reads with seqprep but is not working
seqprep
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 20
4
votes
4
replies
1.5k
views
flye assembly stuck on 'Aligning reads to the graph'
pacbio genome longread assembly flye
4.3 years ago by jleehan ▴ 120
0
votes
4
replies
2.9k
views
bcftools merge
SNP
4.0 years ago by evafinegan • 0
0
votes
0
replies
546
views
clinker & clustermap
genome
4.3 years ago by Rima ▴ 20
1
vote
1
reply
990
views
Is the use of conform-gt viable if the target data has only one sample?
conform-gt Imputation
updated 4.3 years ago by 2.9k • written 4.3 years ago by • 0
0
votes
1
reply
1.7k
views
Plots for Correlation between two dataframes by row
R
updated 4.3 years ago by 89k • written 4.3 years ago by ★ 1.5k
4
votes
5
replies
3.6k
views
GATK BaseRecalibrator error.. how do I solve this?
GATK NGS WES
updated 4.3 years ago by • 0 • written 4.7 years ago by ▴ 20
1
vote
1
reply
943
views
Tdf to bed
bed igvtools tdf
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 20
1
vote
2
replies
1.0k
views
Tools for searching user-specified DNA consensous sequence
MEME
4.3 years ago by andres.firrincieli 3.9k
1
vote
1
reply
961
views
Search for pattern within multiple sequence alignement
python search regex sequence-alignment pandas
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 10
1
vote
1
reply
1.0k
views
How can I solve unknown OTU ids: {1}". Error in PICRUST _Galaxy(Huttenhower lab)
PICRUST python
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 10
1
vote
0
replies
874
views
Should do Seurat NormalizeData after Cellranger aggr?
scRNA
4.3 years ago by hq.huang11.6 ▴ 10
4
votes
4
replies
4.3k
views
Error: cannot allocate vector of size 22.3 Gb
wgcna memory error R
updated 4.3 years ago by 3.9k • written 4.3 years ago by ▴ 50
2
votes
3
replies
1.5k
views
Scaffolding of bacterial genome assemblies
scaffolding genome annotation bacterial assembly
updated 4.3 years ago by ▴ 600 • written 4.3 years ago by • 0
1
vote
0
replies
457
views
What are the standard strategies for combining multiple publicly avaiable datasets of microarray on the same platform and chips design?
mircoarray Integrative-metaanalysis
4.3 years ago by amay ▴ 10
0
votes
0
replies
614
views
SNP calling in the chrX/Y of HG002/NA24385
son Ashkenazi HG002 NA24385
4.3 years ago by cll710426 • 0
2
votes
7
replies
3.7k
views
trouble with 'too short' reads using STAR. each mate maps fine, but the paired end mapping does not
RNA-Seq alignment
updated 4.3 years ago by 15k • written 4.5 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Plink files from genome studio how
plink Genomestudio
updated 4.3 years ago by 153k • written 4.3 years ago by • 0
121,903 results • Page 630 of 2439
Recent Votes
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Is this PCA plot correct??
Subsetting before QC in Spatial Transcriptomics
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Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Thomas.H.Hampton ▴ 10
Thanks again for your carefully considered reply. You asked what I am hoping to learn from a DE analysis. Autologous stem cells are well …
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi ATpoint, thank you very much for the helpful insight! I'm still doing some literature reading on this myself, but have you come across a…
Comment: Whole Genome Sequencing IG regions by ATpoint 89k
The question is what you are after. Is this a disease setup, or...well, what is this all about. Generally, these regions are hotspots of hy…
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