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Comment: TCGA -derived Large RangeSummarizeExperient file
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It works well. Thank you very much ! @atpoint
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For the end user these `DFrames` are just regular data.frames, so you can do `col_data[,c("barcode", "patient", "whatever")]` or just do `a…
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I have checked with my eyes, and I didn't find it, I have only one contig that starts with k127_458 .... but the name is different - k127_4…
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So, you aren't sure about the exact species? Then you might want to be careful with reference-based assembly in general. I recommend the fo…
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That's a very comprehensive list! Thanks for sharing!
`minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
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I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
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By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already.
- https…
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There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
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You could open a new issue and ask the developers of `maftools` if this was something they can add.
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Do you have the locations/sequence of the regions you are interested in?
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