0
votes
0
replies
1
view
0
votes
0
replies
9
views
1
vote
1
reply
65
views
updated 2 hours ago by
Jeremy
▴
910
•
written 4 hours ago by
Mohamed Samir
▴
30
0
votes
0
replies
36
views
4 hours ago by
Jacob
•
0
1
vote
8
replies
805
views
updated 6 hours ago by
a.penatauber
•
0
•
written 3 months ago by
Lucas R.F.
▴
10
799
votes
167
replies
144k
views
109 follow
updated 4 months ago by
Biostar
2.8k
•
written 7.5 years ago by
Istvan Albert
100k
0
votes
3
replies
120
views
updated 5 hours ago by
GenoMax
142k
•
written 6 hours ago by
Shicheng Guo
★
9.4k
0
votes
0
replies
50
views
0
votes
4
replies
149
views
6 hours ago by
reza
▴
300
0
votes
1
reply
70
views
updated 6 hours ago by
Pierre Lindenbaum
162k
•
written 7 hours ago by
avelarbio46
▴
30
0
votes
1
reply
91
views
1
vote
1
reply
130
views
1
vote
3
replies
183
views
0
votes
0
replies
61
views
5
votes
3
replies
154
views
updated 12 hours ago by
GenoMax
142k
•
written 12 hours ago by
Christopher
▴
10
0
votes
0
replies
59
views
12 hours ago by
Tim
•
0
1
vote
5
replies
196
views
0
votes
0
replies
69
views
updated 8 hours ago by
Ram
44k
•
written 13 hours ago by
letizia.ottaviani
•
0
0
votes
6
replies
223
views
updated 6 hours ago by
ATpoint
82k
•
written 15 hours ago by
machaalani29
•
0
0
votes
0
replies
67
views
updated 8 hours ago by
Ram
44k
•
written 16 hours ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
100
views
3
votes
1
reply
131
views
updated 18 hours ago by
Jouni Sirén
▴
380
•
written 21 hours ago by
StevieP
▴
10
0
votes
0
replies
82
views
0
votes
3
replies
266
views
updated 19 hours ago by
colindaven
6.4k
•
written 2 days ago by
Bjorn
•
0
0
votes
1
reply
126
views
updated 8 hours ago by
Ram
44k
•
written 1 day ago by
He11oJe11o
•
0
0
votes
0
replies
69
views
0
votes
2
replies
142
views
0
votes
1
reply
126
views
0
votes
1
reply
130
views
0
votes
5
replies
157
views
1 hour ago by
LucisTheFather
•
0
0
votes
0
replies
82
views
1 day ago by
dlera.lozano
▴
10
0
votes
0
replies
96
views
3
votes
6
replies
307
views
updated 8 hours ago by
Ram
44k
•
written 1 day ago by
anasjamshed
▴
120
0
votes
1
reply
158
views
updated 1 day ago by
andersdetermig
▴
20
•
written 2 days ago by
Christopher
•
0
0
votes
2
replies
258
views
1
vote
10
replies
595
views
0
votes
4
replies
208
views
2
votes
4
replies
233
views
7 hours ago by
Arton
▴
10
1
vote
3
replies
182
views
0
votes
3
replies
171
views
1
vote
2
replies
161
views
9 hours ago by
Tuấn Anh
•
0
2
votes
3
replies
1.1k
views
1
vote
3
replies
283
views
0
votes
2
replies
180
views
1
vote
3
replies
185
views
updated 1 day ago by
Pierre Lindenbaum
162k
•
written 1 day ago by
mrk
•
0
0
votes
3
replies
229
views
3
votes
2
replies
195
views
0
votes
0
replies
96
views
1
vote
2
replies
175
views
3
votes
0
replies
114
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
Rafael Soler
★
1.2k
Recent Votes
Recent Locations •
All
Hong Kong, 1 minute ago
Adelaide, 1 minute ago
China, 6 minutes ago
Guam, 9 minutes ago
Canada, 10 minutes ago
Hong Kong, 12 minutes ago
United States, 14 minutes ago
Recent Awards •
All
Popular Question to
liyong
▴
80
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
reza
▴
300
Popular Question to
mhale
▴
20
Teacher to
Ashutosh Pandey
12k
Recent Replies
Comment: samtools write-index
by
LucisTheFather
•
0
```
-o alignment.sorted.bam##idx##alignment.sorted.bam.bai
```
This portion is to get .bai index, instead of .csi indexing. Although Idk th…
Comment: samtools write-index
by
LucisTheFather
•
0
Really appreciate your help Pierre!
I am a little bit confused btw. do you mean this:
```
rm -vf alignment.sorted.bam.bai
minimap2 -ax map-…
Comment: samtools write-index
by
LucisTheFather
•
0
Yeah, I did multiple split tests of my pipeline (just subset 400k rows of my fastq and run through my pipeline for quick tests)
and none of…
Comment: Which 1000 genomes 30x files should I use for imputation?
by
David-walson
•
0
Hi there. Have you found any suggestions? I have alos been working on the 1KGP high coverage data, but i have no idea about how to use it p…
Comment: MAUVE: No gene annotations in Genbank file alignments
by
pramach1
▴
40
The same problem persists for me too. Running progressiveMauve on command line on bunch of gbk files. Mauve itself runs fine and I do see t…
Answer: Error when looping over multiple columns in a data frame in R
by
Jeremy
▴
910
First of all, you should use "tag.healthy" and "methods" instead of "tag.health" and "method". Also, optimal.cutpoints() wants X to be eit…
Comment: Mouse or Rat Gene Expression Data Similar to GTEx
by
GenoMax
142k
Past thread: https://www.biostars.org/p/178266/
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
GenoMax
142k
Mouse bodymap samples : https://ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA375882%20&o=acc_s%3Aa
Answer: Mouse or Rat Gene Expression Data Similar to GTEx
by
bk11
★
2.5k
Here is the [RatGTEx][1]
[1]: https://ratgtex.org
Comment: Random Access remote BAM files
by
a.penatauber
•
0
Hi Lucas, I am looking for a similar functionality as I'm working with a large volume of CRAM files on S3, and downloading them whole would…
Comment: from CRAM to fastq
by
ATpoint
82k
Yes, but I still think that with this syntax you get an uncompressed file, because samtools does not detect the gz suffix. Just take a `hea…
Comment: merge overlaps and remove non overlap genomic windows
by
reza
▴
300
Overlap of "Ch1 200 250" and "Ch1 150 220" is "Ch1 200 220", but I want to combine windows that have overlap. Thus, my goal is to combine …
Comment: Flag multiple filtering steps on VCF files using VEP
by
Pierre Lindenbaum
162k
I don't understand that question.
Comment: merge overlaps and remove non overlap genomic windows
by
Pierre Lindenbaum
162k
> But your answer is exactly the opposite of what I want
oh I see. but i don't understand the logic why:
"Ch1 200 250" and "Ch1 150 220" …
Comment: merge overlaps and remove non overlap genomic windows
by
reza
▴
300
sorry i edited my example. But your answer is exactly the opposite of what I want
Traffic: 1605 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6