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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 10 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.1k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
0
votes
2
replies
981
views
Forum:
Best Phd Programs in Usa ( Computational Biology)
computational-biology
drug-design
updated 16 months ago by
Ram
43k • written 19 months ago by
AleLs
• 0
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 11 months ago by
Ram
43k • written 18 months ago by
stelakarayani7
• 0
2
votes
1
reply
869
views
Forum:
Package is not available (for R version XXX)? Manually download and install R packages
installation
package
R
updated 16 months ago by
colindaven
6.4k • written 18 months ago by
JC
▴ 30
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 11 months ago by
Ram
43k • written 19 months ago by
iraun
6.2k
2
votes
3
replies
947
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 19 months ago by
Jeremy Leipzig
22k • written 19 months ago by
mjd79
▴ 10
19
votes
13
replies
2.6k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 19 months ago by
Rob
6.5k • written 19 months ago by
tsomakiank
▴ 40
8
votes
13
replies
2.8k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 20 months ago by
artem barski
• 0 • written 20 months ago by
liorglic
★ 1.4k
4
votes
4
replies
1.4k
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
melissachua90
▴ 60
2
votes
4
replies
1.2k
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 13 months ago by
Ram
43k • written 20 months ago by
telroyjatter
▴ 230
2
votes
4
replies
1.0k
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
20 months ago by
upasana
• 0
3
votes
0
replies
817
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
20 months ago by
LauferVA
4.2k
7
votes
14
replies
2.4k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 20 months ago by
LChart
3.9k • written 20 months ago by
Kermit
▴ 90
4
votes
4
replies
1.4k
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 16 months ago by
Ram
43k • written 22 months ago by
carlopecoraro2
★ 2.5k
2
votes
7
replies
1.3k
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 21 months ago by
Ram
43k • written 21 months ago by
ali
▴ 20
6
votes
3
replies
2.3k
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 21 months ago by
Matthias Zepper
4.5k • written 21 months ago by
i.sudbery
19k
0
votes
1
reply
630
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 21 months ago by
ATpoint
82k • written 21 months ago by
kai.yang2
• 0
4
votes
2
replies
1.9k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 16 months ago by
Ram
43k • written 21 months ago by
LauferVA
4.2k
0
votes
0
replies
743
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
21 months ago by
goddy93
• 0
3
votes
1
reply
694
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 21 months ago by
Ram
43k • written 21 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
1.6k
views
Forum:
Skills for industry career in bioinformatics
industry
updated 21 months ago by
rpolicastro
13k • written 21 months ago by
m.engalla
▴ 10
9
votes
6
replies
1.3k
views
Forum:
Programming languages in industry
programming
language
updated 22 months ago by
Medhat
9.7k • written 22 months ago by
m.monikus
▴ 30
2
votes
6
replies
1.3k
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
22 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
795
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
22 months ago by
Francesco
▴ 20
3
votes
2
replies
849
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 10 months ago by
Ram
43k • written 22 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
755
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 16 months ago by
Ram
43k • written 22 months ago by
pabe
▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 17 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
7
votes
8
replies
1.6k
views
Forum:
Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by
Ram
43k • written 23 months ago by
4galaxy77
2.8k
0
votes
0
replies
645
views
Forum:
Bioinformatics for understanding cancer and other diseases
cancer
omics
updated 16 months ago by
Ram
43k • written 23 months ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
2.5k
views
Forum:
What counts as a valid biological replicate in single cell RNAseq?
statistics
biological
replicates
scRNA-seq
updated 23 months ago by
benformatics
3.9k • written 23 months ago by
david.ferenbach
• 0
3
votes
3
replies
939
views
Forum:
Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany
PostDoc
updated 23 months ago by
Jean-Karim Heriche
27k • written 23 months ago by
German.M.Demidov
★ 2.9k
0
votes
0
replies
376
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 16 months ago by
Ram
43k • written 23 months ago by
user366312
▴ 20
0
votes
2
replies
1.1k
views
Forum:
Bioinformatics algorithm tutorials in C++/C
protein
gene
genome
updated 23 months ago by
Michael
54k • written 23 months ago by
sunnykevin97
▴ 980
34
votes
11
replies
9.3k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 20 months ago by
Ram
43k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
6
votes
8
replies
3.0k
views
Forum:
PC build for Nanopore data analysis
python
PC
pipeline
nanopore-sequencing
23 months ago by
stan.aanhane
▴ 30
2
votes
3
replies
928
views
Forum:
What is difference between Bioinformatics and Data Science?
Data-Science
updated 16 months ago by
Ram
43k • written 23 months ago by
Ssonia
▴ 30
2
votes
2
replies
946
views
Forum:
Project ideas
project-ideas
updated 23 months ago by
Michael
54k • written 23 months ago by
nivedha
• 0
0
votes
0
replies
580
views
Forum:
Beagle5 imputation accuracy
beagle5
DR2
imputation
impute2
impute-info
24 months ago by
ch333
• 0
1
vote
6
replies
1.1k
views
Forum:
Bioinformatics Software Developer job interview steps and what to expect?
interview
software-development
updated 22 months ago by
Ram
43k • written 24 months ago by
d
• 0
2
votes
2
replies
784
views
Forum:
What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS
GWAS
WGS
updated 16 months ago by
Ram
43k • written 2.0 years ago by
ehsanmofidichelan
• 0
5
votes
5
replies
1.1k
views
Forum:
Best book introducing R programming?
coding
R
24 months ago by
Scottie
▴ 10
4
votes
6
replies
1.5k
views
Forum:
How relevant are read numbers in FastQ headers for paired reads?
header
fastq
number
read
2.0 years ago by
Matthias Zepper
4.5k
0
votes
0
replies
624
views
Forum:
commonly-used bioinformatics pipeline
Galaxy
updated 16 months ago by
Ram
43k • written 2.0 years ago by
anasjamshed
▴ 120
0
votes
0
replies
565
views
Forum:
Master's topic in Bioinformatics
Bio-informatique
2.0 years ago by
Badji Oumar
• 0
13
votes
15
replies
3.4k
views
8 follow
Forum:
Biostar under spam attack - restrictions added to post content and title
meta
biostars
updated 14 months ago by
Ram
43k • written 8.8 years ago by
Istvan Albert
100k
0
votes
1
reply
785
views
Forum:
Retrieve SCCM data for client software distribution serviceNow
training
servicenow
online
2.0 years ago by
hkrtrainings408
• 0
47
votes
24
replies
6.5k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 16 months ago by
Ram
43k • written 6.5 years ago by
Michael
54k
5
votes
8
replies
2.7k
views
Forum:
SQL-why do we need it in Bioinformatics ?
SQL
Programming
updated 16 months ago by
Ram
43k • written 2.1 years ago by
iibrams07
▴ 10
1,000 results • Page
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Recent Votes
A: Insert Size And Fragment Size ?
A: vcf calculation of allele counts and allele number
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
which tool/software/package should I use to preprocess the rosetta-merck microarray platform raw data?
Answer: How many reads for WGS Sequencing?
Comment: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: What should I consider as FASTA for dataset?
by
GenoMax
141k
> Should I use the shortened FASTA from pdb or should I use the full FASTA for my dataset? What analysis are you trying to use the data fo…
Comment: Is it possible to bulk download files from GEO repository?
by
GenoMax
141k
Galaxy specific requests are best posted on their help forum: https://help.galaxyproject.org/
Answer: Two references 1. genome 2. plasmid for bowtie2
by
GenoMax
141k
You can simply `cat` all reference sequences together. Create an index file with `bowtie2` and then align as usual.
Answer: High Malat-1 expression in single cell data
by
ATpoint
82k
My comment is general since I've never looked at this gene specifically, but metrics of poor cell quality in my experience never come alone…
Comment: What does it mean single base resolution in sequencing?
by
GenoMax
141k
>You known, 90% + genomic region is transcripted. So, total RNA-seq theoretically covers most genome region. Perhaps but not all of that …
Answer: Using Delly/Pindel/breakdancer for Identifying Transgene Insertion Sites in Mous
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trausch
★ 1.9k
For [delly][1], we usually augment the mouse reference genome with the additional sequence, then remap and then look in the delly output fo…
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
Thats very intersting! What are the features in your classifier?
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
hagl
▴ 10
Thank you very much for the response. Following your recommendation in pursuing option one by selecting highest expressions and subsequent …
Answer: RNAseq one control two conditions, shared and exclusive genes
by
Mohamed Abderrahmane
▴ 20
I think it would be pertinent to use DESEq2 to perform two comparisons: the first one between the control group and condition 1, and the se…
Comment: Longitudinal analysis of subpopulations: which approach is better?
by
Lluís R.
★ 1.2k
Many thanks for the helpful comment. Indeed, I read some of them, but I was not fully convinced and I missed the link FAQ of DESeq2. The re…
Comment: Longitudinal analysis of subpopulations: which approach is better?
by
ATpoint
82k
Keeping data together is most powerful and most convenient as you have a single analysis object and a single count matrix. I would always d…
Comment: Questions about a bug when transferring cram file to bam file
by
jkbonfield
★ 1.2k
Assuming you have network access and the md5sum is registered with the EBI's reference server, yes - it'll be downloaded and cached locally.
Comment: Downsampling fastq file
by
marco.barr
▴ 80
I followed your advice and it seems that I'm getting results comparable to what I was getting before. Upon checking with `wc -l` on the ori…
Comment: Finding batch and outlayers
by
christopher medway
▴ 450
You could perform an ANOVA to test if there is a significant association between batch number and a given Principal Component
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i.sudbery
19k
Fascinating! We also use inputs when doing metagene to protect against those situations where regions up or downstream of our metagene al…
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