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460 results • Page
2 of 10
Sort: replies
Rank
Views
Votes
Replies
57
votes
15
replies
6.2k
views
9 follow
Forum:
Good practices while dealing with very large datasets
Big-Data
Programming
updated 11 months ago by
Ram
43k • written 7.0 years ago by
VHahaut
★ 1.2k
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 10 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
6
votes
15
replies
1.7k
views
Forum:
PhD Bioinformatics on GWAS
SNP
GWAS
genome
PHD
updated 10 months ago by
Ram
43k • written 4.2 years ago by
davidenoma
▴ 50
22
votes
15
replies
8.8k
views
11 follow
Forum:
RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivanarg2
▴ 80
28
votes
15
replies
2.2k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivan.radonov
▴ 10
23
votes
15
replies
5.1k
views
6 follow
Forum:
On the usage of Golang
assembly
next-gen
alignment
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Lucas Peres
▴ 80
19
votes
14
replies
2.1k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 months ago by
Jeremy Leipzig
22k • written 7 months ago by
vincenthus
▴ 70
9
votes
14
replies
2.4k
views
Forum:
MS Bioinformatics Project
assembly
sequencing
alignment
R
SNP
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Moneeb Bajwa
▴ 10
17
votes
14
replies
1.9k
views
10 follow
Forum:
What would be the trend in next few years in NGS era?
NGS
sequencing
updated 11 months ago by
Ram
43k • written 5.5 years ago by
ahmad mousavi
▴ 800
73
votes
14
replies
4.3k
views
12 follow
Forum:
Things you wish you knew when entering the bioinformatics field
pitfalls
advice
updated 10 months ago by
Ram
43k • written 3.6 years ago by
jared.andrews07
★ 16k
5
votes
14
replies
2.0k
views
Forum:
immediate help needed for genome sequence analysis of bacteria
genome
miseq
webinar
paired-end
updated 11 months ago by
Ram
43k • written 7.1 years ago by
mariomemory
• 0
17
votes
14
replies
3.3k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 10 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
3
votes
14
replies
2.1k
views
6 follow
Forum:
Search for gene variants
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Rm
8.3k
12
votes
14
replies
2.4k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.9 years ago by
Gabriel Wajnberg
▴ 70
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 10 months ago by
Ram
43k • written 9.6 years ago by
Medhat
9.7k
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 6 months ago by
kieran
▴ 10
15
votes
13
replies
4.1k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
1
vote
13
replies
2.8k
views
Forum:
Bioinformatics computer upgrade help
computer
updated 10 months ago by
Ram
43k • written 3.8 years ago by
truebeliever24
▴ 50
4
votes
13
replies
1.7k
views
Forum:
Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare
next-gen
NovaSeq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
Torrey Ah-Tye
▴ 10
11
votes
13
replies
4.5k
views
6 follow
Forum:
NGS Data storage solutions for small organisations or big labs
big-data
HTS
storage
NGS
metagenomics
updated 11 months ago by
Ram
43k • written 4.9 years ago by
bioinfo
▴ 830
4
votes
12
replies
1.5k
views
Forum:
publicly available data
arrayexpress
GEO
SRA
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Konstantinos Yeles
▴ 110
23
votes
12
replies
1.9k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 10 months ago by
Ram
43k • written 3.9 years ago by
David Langenberger
11k
12
votes
12
replies
3.0k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 11 months ago by
Ram
43k • written 5.9 years ago by
padgaus
▴ 50
26
votes
12
replies
7.5k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by
zyan2005
▴ 10 • written 10.5 years ago by
johnblue81
▴ 50
18
votes
12
replies
2.5k
views
6 follow
Forum:
why GATK makes things more complicated ?
genomics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Learner
▴ 280
21
votes
12
replies
3.5k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 10 months ago by
Ram
43k • written 4.1 years ago by
scolobs
• 0
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 10 months ago by
Ram
43k • written 4.4 years ago by
c_u
▴ 520
31
votes
12
replies
947
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
8 weeks ago by
karlaarz
▴ 90
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
meta
biostars
Guidelines
updated 2 days ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 13 months ago by
bompipi95
▴ 150
9
votes
11
replies
3.2k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioinformaticsLad
▴ 200
13
votes
11
replies
4.7k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Batu
▴ 250
21
votes
11
replies
2.0k
views
Forum:
Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
10
votes
11
replies
4.2k
views
7 follow
Forum:
What made you interested in Bioinformatics?
career
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
8
votes
11
replies
1.8k
views
Forum:
What makes a good bionformatics prediction service from the point of user experience?
server
prediction-service
updated 11 months ago by
Ram
43k • written 6.5 years ago by
aquaq
▴ 40
23
votes
11
replies
2.0k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 10 months ago by
Ram
43k • written 3.7 years ago by
nkinney06
▴ 140
22
votes
11
replies
3.3k
views
Forum:
ExpressionSet in the age of tidyverse
expressionset
R
bioconductor
updated 11 months ago by
Ram
43k • written 6.0 years ago by
igor
13k
21
votes
11
replies
1.9k
views
8 follow
Forum:
what I want to do after the PhD?
PhD
updated 11 months ago by
Ram
43k • written 7.1 years ago by
zizigolu
★ 4.3k
14
votes
11
replies
6.7k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 11 months ago by
Ram
43k • written 4.9 years ago by
chen
★ 2.5k
18
votes
11
replies
2.4k
views
8 follow
Forum:
Create a File format to store Variant
hgvs
json
variant
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sacha
★ 2.4k
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 11 months ago by
Ram
43k • written 2.1 years ago by
mark.ziemann
★ 1.9k
17
votes
11
replies
981
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
9
votes
10
replies
17k
views
8 follow
Forum:
Open Source Bioinformatics projects for beginners
Open-Source
Beginners
updated 12 weeks ago by
Saransh
• 0 • written 6.3 years ago by
Eugenia84
▴ 40
19
votes
10
replies
1.5k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 7 months ago by
vincenthus
▴ 70 • written 7 months ago by
Sasha
▴ 840
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 11 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
10
votes
10
replies
1.7k
views
Forum:
Doctor looking fertility for a collaborator for text mining on pubmed
text-mining
fertility
pubmed
updated 11 months ago by
Ram
43k • written 6.4 years ago by
jeromebouaziz
• 0
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.5 years ago by
DriesB
▴ 110
15
votes
10
replies
2.3k
views
6 follow
Forum:
help identifying bioinformatics operations tools
database
next-gen
operations
genomics
updated 11 months ago by
Ram
43k • written 5.4 years ago by
jsmedmar
▴ 80
460 results • Page
2 of 10
Recent Votes
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: genome assembly records not present in assembly_summary.txt
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
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Recent Awards •
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GenoMax
141k
Popular Question
to
rheab1230
▴ 140
Popular Question
to
BioinfGuru
★ 1.7k
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bk11
★ 2.4k
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vinayjrao
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Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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