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1,000 results • Page 3 of 20
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5
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4
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1.4k
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Forum: Best BAM viewer in 2022
sam bam
updated 10 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.2k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 3 months ago by 3.9k • written 18 months ago by ▴ 30
0
votes
2
replies
992
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 17 months ago by 43k • written 19 months ago by • 0
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 11 months ago by 43k • written 18 months ago by • 0
2
votes
1
reply
873
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 16 months ago by 6.4k • written 18 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 11 months ago by 43k • written 19 months ago by 6.2k
2
votes
3
replies
952
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 19 months ago by 22k • written 20 months ago by ▴ 10
19
votes
13
replies
2.6k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.5k • written 20 months ago by ▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 20 months ago by 100k • written 20 months ago by ▴ 70
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 13 months ago by 43k • written 20 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
20 months ago by upasana • 0
3
votes
0
replies
823
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
20 months ago by LauferVA 4.2k
7
votes
14
replies
2.4k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 17 months ago by 43k • written 22 months ago by ★ 2.5k
2
votes
7
replies
1.3k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 21 months ago by 43k • written 21 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 21 months ago by 4.6k • written 21 months ago by 19k
0
votes
1
reply
636
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 21 months ago by 82k • written 21 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 17 months ago by 43k • written 22 months ago by 4.2k
0
votes
0
replies
750
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
22 months ago by goddy93 • 0
3
votes
1
reply
699
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by • 0
5
votes
2
replies
1.6k
views
Forum: Skills for industry career in bioinformatics
industry
updated 22 months ago by 13k • written 22 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 22 months ago by 9.7k • written 22 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
22 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
803
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
22 months ago by Francesco ▴ 20
3
votes
2
replies
853
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 10 months ago by 43k • written 23 months ago by ▴ 50
0
votes
0
replies
756
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 17 months ago by 43k • written 23 months ago by ▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by 43k • written 23 months ago by 2.8k
0
votes
0
replies
651
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 17 months ago by 43k • written 23 months ago by ★ 1.5k
1
vote
3
replies
2.5k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 23 months ago by 3.9k • written 23 months ago by • 0
3
votes
3
replies
951
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 23 months ago by 27k • written 23 months ago by ★ 2.9k
0
votes
0
replies
378
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 17 months ago by 43k • written 23 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 23 months ago by 54k • written 23 months ago by ▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 21 months ago by 43k • written 8.5 years ago by ★ 9.4k
6
votes
8
replies
3.1k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
23 months ago by stan.aanhane ▴ 30
2
votes
3
replies
942
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by 43k • written 24 months ago by ▴ 30
2
votes
2
replies
950
views
Forum: Project ideas
project-ideas
updated 24 months ago by 54k • written 24 months ago by • 0
0
votes
0
replies
583
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
24 months ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 22 months ago by 43k • written 2.0 years ago by • 0
2
votes
2
replies
790
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 17 months ago by 43k • written 2.0 years ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
2.0 years ago by Scottie ▴ 10
4
votes
6
replies
1.5k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
2.0 years ago by Matthias Zepper 4.6k
0
votes
0
replies
628
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by 43k • written 2.0 years ago by ▴ 120
0
votes
0
replies
569
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.0 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 14 months ago by 43k • written 8.9 years ago by 100k
0
votes
1
reply
800
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.0 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.5k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 17 months ago by 43k • written 6.5 years ago by 54k
5
votes
8
replies
2.7k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 17 months ago by 43k • written 2.1 years ago by ▴ 10
1,000 results • Page 3 of 20
Recent Votes
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
How to download genome assemblies from NCBI with a list of GCA identifiers?
Answer: Why is RNA-Seq library size not constant among samples?
Answer: TFs and Gene databases
Answer: java out of memory error through beagle for imutation
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
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Recent Replies
Comment: identifying transgene insertion site in WGS by Cameron.walker9900 • 0
When calling for SVs using gridds, should I use the reference genome that I added my transgene to, or should I use the unedited reference?
Comment: Question regarding WGCNA by deepak • 0
Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
Comment: RNA seq analysis by prifa • 0
thank you for your reply Zepper, a bit clarification, I took all the samples from SRA data table, but yes from different lab and also diffe…
Comment: RNA seq analysis by Matthias Zepper 4.6k
That you have a varying number of replicates is not ideal ([see here why][1]), but manageable. See for example the [Specific experimental d…
Comment: Percentage coverage of reference genome by de novo genome by Joe 21k
OK, in that case it should be even easier as its just a single pairwise alignment, so the same advice holds.
Comment: FarmCPU - how to explain the reported 'effect'? by chloek88 • 0
Hi Phillip, Did you ever figure out the answer to this? I also have rMVP results with a column 'effect', values ranging from ~-1.4 to +1…
Comment: Soft-clipping read ends based on read group by chenl ▴ 10
Hi, Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Comment: Phasing a mixture of two individuals' DNA with long reads by njornet ▴ 20
This is related to that other question but for now, the only thing I'm interested in is separating the three unique chromosomes, without as…
Comment: A question about reference genome for creating the consensus sequence by GenoMax 142k
> I wonder how to adjust the base genome. If you are looking to make changes to the reference you used for alignment then look into http…
Comment: Phasing a mixture of two individuals' DNA with long reads by GenoMax 142k
We had a related discussion in a prior thread by OP: https://www.biostars.org/p/9593780/ Do you have genotype (or independent sequence) da…
Answer: TFs and Gene databases by b.contreras.moreira ▴ 180
I can also suggest <https://footprintdb.eead.csic.es> which links TFs to their DNA motifs, not their gene targets.
Comment: Correlation Analysis by manaswwm ▴ 510
How many methylation and expression values do you have per gene? If per gene you have a table named - *gene_corr*; which has two columns - …
Comment: How do I change the title font size in ViolinPlot (Seurat) by Assa Yeroslaviz ★ 1.8k
thx for the explanation. I did look at the function and I also read in the help page, that you get a patchwork object, only when using `co…
Comment: Percentage coverage of reference genome by de novo genome by Lemonhope • 0
Thank you, I'll check out Quast!
Answer: How do I change the title font size in ViolinPlot (Seurat) by ATpoint 82k
Looking at the source code of the function it seems that they make individual plots with ggplot when `features` is `> 1` and then use patch…
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