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1,000 results • Page 3 of 20
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Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
17 months ago by hkrtrainings408 • 0
47
votes
24
replies
5.7k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 9 months ago by 40k • written 5.9 years ago by 53k
5
votes
8
replies
2.1k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 9 months ago by 40k • written 17 months ago by ▴ 10
6
votes
7
replies
889
views
Forum: Generic avatars, not gravatars?
technical avatar
18 months ago by Michael 53k
4
votes
0
replies
2.3k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
18 months ago by rohitsatyam102 ▴ 750
0
votes
0
replies
439
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
18 months ago by jeronimocid93 • 0
2
votes
2
replies
824
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 15 months ago by 40k • written 18 months ago by ▴ 20
15
votes
11
replies
4.0k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 4 months ago by 40k • written 18 months ago by ★ 1.8k
0
votes
0
replies
382
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
18 months ago by akamonto • 0
2
votes
5
replies
776
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 18 months ago by 40k • written 18 months ago by ▴ 520
0
votes
0
replies
422
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 18 months ago by 77k • written 18 months ago by • 0
29
votes
10
replies
5.8k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 6 months ago by 40k • written 5.5 years ago by 21k
3
votes
6
replies
1.9k
views
Forum: A Css For Small Screen Devices?
meta
updated 7 months ago by 40k • written 11.4 years ago by ★ 3.6k
12
votes
6
replies
1.7k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 15 months ago by 40k • written 19 months ago by ▴ 20
0
votes
3
replies
767
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 4 months ago by 40k • written 19 months ago by • 0
0
votes
4
replies
997
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 19 months ago by 134k • written 19 months ago by ▴ 10
2
votes
0
replies
617
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
19 months ago by rohitsatyam102 ▴ 750
3
votes
4
replies
1.9k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 7 months ago by 40k • written 19 months ago by ▴ 10
1
vote
0
replies
438
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 7 months ago by 40k • written 19 months ago by ▴ 10
0
votes
1
reply
640
views
Forum: ensemble VEP server is down
VEP ensemble
updated 19 months ago by 77k • written 19 months ago by • 0
15
votes
10
replies
1.6k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 19 months ago by ★ 25k • written 19 months ago by ★ 2.7k
3
votes
8
replies
1.2k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 20 months ago by 21k • written 20 months ago by ▴ 520
0
votes
0
replies
440
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 20 months ago by 157k • written 20 months ago by ★ 2.3k
4
votes
9
replies
2.3k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
20 months ago by melatoninixo ▴ 10
17
votes
14
replies
2.7k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 3 months ago by ▴ 200 • written 20 months ago by ▴ 60
0
votes
1
reply
510
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 20 months ago by 77k • written 20 months ago by ▴ 110
0
votes
0
replies
359
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
20 months ago by sabaghianamir70 ▴ 70
6
votes
5
replies
3.8k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 15 months ago by 40k • written 5.3 years ago by • 0
6
votes
5
replies
934
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 20 months ago by 98k • written 20 months ago by ▴ 590
4
votes
7
replies
1.5k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 20 months ago by ★ 3.2k • written 20 months ago by ▴ 120
9
votes
8
replies
4.8k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 6 months ago by 40k • written 8.3 years ago by ★ 2.2k
7
votes
2
replies
1.3k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 7 months ago by 40k • written 21 months ago by ★ 1.2k
0
votes
1
reply
639
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 3 months ago by 40k • written 21 months ago by ★ 2.3k
24
votes
11
replies
3.6k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 21 months ago by 8.2k • written 21 months ago by • 0
0
votes
4
replies
686
views
Forum: Terms (like atlas, map, and archive) on database description
database
21 months ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
634
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
21 months ago by maa4618 • 0
19
votes
1
reply
4.0k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 6 months ago by 77k • written 2.6 years ago by ▴ 360
6
votes
7
replies
1.2k
views
Forum: How to change my email address
meta biostars
updated 21 months ago by • 0 • written 2.6 years ago by ▴ 50
9
votes
11
replies
2.9k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 14 months ago by ▴ 100 • written 2.4 years ago by ★ 5.2k
7
votes
3
replies
3.4k
views
Forum: Trimming tools - your experience please?
trimming
updated 22 months ago by 17k • written 22 months ago by ▴ 20
8
votes
9
replies
1.5k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 7 months ago by 40k • written 22 months ago by ▴ 520
74
votes
14
replies
29k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 15 months ago by 40k • written 13.3 years ago by 4.5k
6
votes
3
replies
963
views
Forum: Computational Biology Conference
biology computational science research conference
updated 22 months ago by 47k • written 22 months ago by ▴ 760
0
votes
1
reply
596
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 22 months ago by 134k • written 22 months ago by ★ 9.3k
0
votes
1
reply
580
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 22 months ago by 8.4k • written 22 months ago by • 0
0
votes
0
replies
428
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 7 months ago by 40k • written 22 months ago by • 0
2
votes
7
replies
2.8k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 23 months ago by 134k • written 23 months ago by ▴ 20
21
votes
8
replies
5.6k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 23 months ago by 98k • written 23 months ago by ★ 25k
6
votes
2
replies
657
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 23 months ago by 40k • written 23 months ago by • 0
1
vote
7
replies
1.2k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
23 months ago by nickroseae ▴ 10
1,000 results • Page 3 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
GEO data mining (IB) - Downloading Sequence Read Archive (SRA) raw data
Answer: Fetch Fastq files directly for SRA data
Answer: Running Rockhopper from a command-line
Comment: Hisat2 index and alignment question
Comment: How the first sequencing template removed in pair end sequencing
Comment: Which function is best for pathway analysis?
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Recent Replies
Answer: Sequence quality drops in the 3' end of the left sequence in paired end. What co by ATpoint 77k
That's normal and known: https://www.biostars.org/p/91624/
Comment: to annotate BEDPE files by Lhl ▴ 760
is this what you are looking for? https://github.com/imgag/ngs-bits/blob/master/doc/tools/BedpeGeneAnnotation.md
Comment: ncbi error report log for validate fastq issue by 1769mkc ★ 1.1k
" you're forced to use it" this is sort of since I have use docker image and then pass the GSM id as list of input first to check if the th…
Comment: ncbi error report log for validate fastq issue by ATpoint 77k
I don't think this log is helpful. Can't you just get fastq download links via sra-explorer.info or the tool mentioned by @rob in his answe…
Comment: GO ENRICHMENT ANALYSIS- DESEQ by Basti ★ 1.7k
You need to show an example of your list
Comment: How the first sequencing template removed in pair end sequencing by rfran010 ▴ 810
Great! It looks like USER enzyme is used to cleave before the first read sequencing and formamidopyrimidine DNA N-glycosylase is used to cl…
Comment: module and trait correlation for WGCNA by andres.firrincieli 3.4k
Hi, First of all, you should never use DEGs for WGCNA. See @kevinblighe answer: [link][1]. > However, when it comes to module-trait analy…
Comment: identify DEGs across all conditions and per specific conditions by luffy ▴ 50
@camillab, Please look into Kevin Blighe's response in this [post][1] hope that helps. [1]: https://www.biostars.org/p/357464/
Answer: Running Rockhopper from a command-line by langziv ▴ 50
I managed to resolve the issue by passing absolute paths instead of relative ones.
Comment: Which function is best for pathway analysis? by luffy ▴ 50
@chris Please look into @Hamid Ghaedi's well documented [post][1] on ORA and GSEA, Or [this][2] documentation. Hope this helps. [1]: ht…
Comment: Bacterial Pangenome Analysis by kirankumareripogu ▴ 10
Hi @liorglic, Thank you for your prompt response. I totally agree with you that different blastp cuttoffs provide different results and…
Answer: Fetch Fastq files directly for SRA data by Rob 6.2k
What is the accession for the project? Many — though not all — of the projects present in the NCBI SRA are also hosted in the European Nuc…
Comment: Dataset's name in BioMart for S. pombe by YUYANG.OON • 0
Works with `useMart(biomart="fungi_mart", dataset="spombe_eg_gene", host="https://fungi.ensembl.org")`
Comment: Bug of vg surject by Jordan M Eizenga ▴ 360
This is still hard to interpret without the commands. What would help is if you literally copied the full UNIX commands along with their re…
Comment: Which function is best for pathway analysis? by Chris ▴ 180
Thank you for your reply! Do you have code that I and others can implement? I am not sure how to customize the gmt file from my differentia…
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