Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
6 of 20
Sort: Views
Rank
Views
Votes
Replies
63
votes
16
replies
43k
views
11 follow
How To Analyze Imputed Gwas Data
gwas
r
snp
imputation
plink
updated 3.9 years ago by
Mahan
▴ 70 • written 13.2 years ago by
Stephen
2.8k
48
votes
33
replies
43k
views
16 follow
Extract A Group Of Fasta Sequences From A File
fasta
python
perl
biopython
bioperl
updated 2.4 years ago by
Ram
43k • written 13.8 years ago by
Kyle
▴ 60
25
votes
6
replies
43k
views
Aggregate multiple rows based on common values in given columns
R
updated 5.6 years ago by
zx8754
11k • written 8.5 years ago by
writersblog02
▴ 70
20
votes
4
replies
43k
views
what does a log 2-fold change values of mean ?
motif
microarray
gene
genesequencing
sequencing
5.5 years ago by
a4appy23
▴ 50
15
votes
12
replies
43k
views
8 follow
Intall local BLAST in Ubuntu
blast
local
system
requirement
Ubuntu
updated 3.9 years ago by
brian.fristensky
▴ 460 • written 6.8 years ago by
Kanchana Sankalpa
▴ 30
105
votes
26
replies
43k
views
23 follow
How To Create Mutation Diagram In R Or In Any Tools?
mutation
domain
r
updated 8 months ago by
zx8754
11k • written 11.3 years ago by
henryvuong
▴ 810
2
votes
4
replies
43k
views
python 3.8 'No module named pip'
rna-seq
updated 2.9 years ago by
linehammer
▴ 10 • written 3.9 years ago by
amandanm
• 0
81
votes
21
replies
43k
views
15 follow
How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
bed
transcript
ucsc
biomart
updated 8 months ago by
Joel Wallenius
▴ 210 • written 10.3 years ago by
pristanna
▴ 750
19
votes
6
replies
43k
views
How can I convert -log10 (p-value) to p-value?
p-value
updated 18 months ago by
1769mkc
★ 1.2k • written 5.3 years ago by
somayeh bakhshalizadeh
▴ 80
39
votes
17
replies
43k
views
13 follow
Extract Cds Fastas From A Gff Annotation + Reference Sequence
gff
CDS
updated 15 months ago by
Ram
43k • written 12.0 years ago by
Federico Giorgi
▴ 740
40
votes
4
replies
43k
views
What Is Snp Calling?
snp
next-gen
sequencing
snp
updated 13.3 years ago by
Joesoap
• 0 • written 14.0 years ago by
Giovanni M Dall'Olio
28k
10
votes
16
replies
43k
views
6 follow
Beginner in Python- need in assistance translating DNA into protein sequence
python
updated 3.3 years ago by
maram.mostafa08800
• 0 • written 7.4 years ago by
oki4
▴ 10
60
votes
12
replies
43k
views
10 follow
Get chromosome sizes from fasta file
genome
ucsc
updated 18 months ago by
jamesogilvie1
• 0 • written 8.3 years ago by
rioualen
▴ 710
40
votes
10
replies
42k
views
8 follow
Batch effects : ComBat or removebatcheffects (limma package) ?
limma
sva
Combat
batch-effect
updated 16 days ago by
cwwong13
▴ 40 • written 6.8 years ago by
lessismore
★ 1.3k
40
votes
13
replies
42k
views
8 follow
Difference between FC and LogFC
r
microarray
updated 2.4 years ago by
琪
• 0 • written 6.0 years ago by
Joe Kherery
▴ 120
45
votes
7
replies
42k
views
9 follow
Any Good Bam And Sam Viewer?
viewer
sam
bam
updated 2.3 years ago by
Ram
43k • written 12.6 years ago by
Ken
▴ 160
26
votes
13
replies
42k
views
7 follow
what is the difference between GRCh37 and hg19 ?
RNA-Seq
Assembly
genome
alignment
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
jack
▴ 970
23
votes
4
replies
42k
views
What is the difference between GTF AND GFF format
RNA-Seq
updated 10.0 years ago by
jason
▴ 160 • written 10.0 years ago by
Y Tb
▴ 230
14
votes
6
replies
42k
views
7 follow
How To Convert A Fasta Or Alignment File To Nexus (.Nex) File That Is To Be Used In The Beast Program
updated 20 months ago by
kamiljaron
▴ 220 • written 10.7 years ago by
triinlakspere
▴ 20
42
votes
21
replies
42k
views
11 follow
Comparing 2 Large Lists (Millions Of Rows) To Identify Shared And Exclusive Elements
unix
list
intersect
updated 2.5 years ago by
Ram
43k • written 11.3 years ago by
Bioinfosm
▴ 620
46
votes
9
replies
42k
views
9 follow
How To Convert Centimorgan To Base Pair
genetics
distance
updated 19 months ago by
Ram
43k • written 12.3 years ago by
Aurgha
▴ 90
16
votes
5
replies
42k
views
Understand Samtools View Output
samtools
updated 2.5 years ago by
Ram
43k • written 12.9 years ago by
Zhshqzyc
▴ 520
4
votes
4
replies
42k
views
How to convert a URL into a DOI programmatically
pubmed
doi
url
written 7.6 years ago by
entheologist33
▴ 100
64
votes
24
replies
42k
views
12 follow
How to extract unique mapped results from Bowtie2 bam results?
alignment
updated 16 months ago by
Ram
43k • written 10.0 years ago by
zhwjmch
▴ 170
33
votes
4
replies
42k
views
What read lengths are produced by modern Illumina sequencers?
read-length
dna
illumina
updated 2.3 years ago by
Ram
43k • written 9.9 years ago by
John Smith
▴ 320
18
votes
5
replies
42k
views
R - pheatmap - changing column order
pheatmap
heatmap
R
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
piotr.grabowski
▴ 60
53
votes
21
replies
42k
views
12 follow
How To Filter Multi Fasta By Length??
awk
updated 5.8 years ago by
Ram
43k • written 10.8 years ago by
HG
★ 1.2k
29
votes
5
replies
41k
views
What Does Up-Regulated And Down-Regulated Mean?
updated 2.4 years ago by
BioNerd
• 0 • written 12.1 years ago by
kate
▴ 100
13
votes
8
replies
41k
views
6 follow
Bowtie2 Ubuntu Installation
ubuntu
bowtie
updated 3.3 years ago by
saritamaurya
• 0 • written 11.7 years ago by
Nasrin
▴ 30
50
votes
21
replies
41k
views
11 follow
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm
rna-seq
cutoff
fpkm
updated 2.5 years ago by
Ram
43k • written 11.3 years ago by
biorepine
★ 1.5k
26
votes
19
replies
41k
views
7 follow
Fasta File Vs Fa File
fasta
sequence
updated 12.9 years ago by
brentp
24k • written 12.9 years ago by
Zhshqzyc
▴ 520
33
votes
12
replies
41k
views
8 follow
How To Find Paralogs Using Blast
homology
blast
updated 12.2 years ago by
Larry_Parnell
16k • written 12.8 years ago by
ngsgene
▴ 380
49
votes
23
replies
41k
views
13 follow
Concatenating fastq.gz files across lanes
RNA-Seq
updated 2.3 years ago by
D
▴ 10 • written 6.0 years ago by
volvicpellegrino
▴ 40
206
votes
58
replies
41k
views
31 follow
Forum:
Will Python Take The Place Of R?
r
statistics
python
biopython
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Medhat
9.7k
42
votes
4
replies
41k
views
What Control For Chip-Seq: Input, Igg Or Untagged Strain?
chip-seq
updated 12.4 years ago by
Ying W
★ 4.2k • written 12.4 years ago by
Olbzn
▴ 180
27
votes
12
replies
41k
views
7 follow
Log2 Ratio or Log2 Fold Change - terminology confusion and which one should I use?
genome
updated 22 months ago by
obidobi
▴ 30 • written 7.5 years ago by
Genosa
▴ 160
82
votes
13
replies
41k
views
7 follow
Ti/Tv Ratio Confirms Snp Discovery. Is This A General Rule?
snp
snp
updated 3.7 years ago by
Biostar
20 • written 13.4 years ago by
Yahan
▴ 210
6
votes
7
replies
41k
views
6 follow
Bowtie Building Index Issue
bowtie
bowtie2
genome
updated 11.9 years ago by
Istvan Albert
100k • written 11.9 years ago by
Arpssss
▴ 40
17
votes
7
replies
41k
views
6 follow
Calculating Genomic Inflation Factor
gwas
plink
updated 7.3 years ago by
GabrielMontenegro
▴ 670 • written 12.1 years ago by
Debs
▴ 30
28
votes
10
replies
41k
views
6 follow
Extract subset of samples from multigenome vcf file
vcf
8.1 years ago by
MAPK
★ 2.1k
13
votes
10
replies
40k
views
7 follow
How To Uncompress The 1000 Genome Vcf.Gz File
updated 2.7 years ago by
tcarter.era
• 0 • written 11.5 years ago by
GPR
▴ 390
52
votes
14
replies
40k
views
15 follow
Converting Bam To Fastq
next-gen-sequencing
fastq
updated 6 months ago by
Pierre Lindenbaum
161k • written 14.1 years ago by
Zach Stednick
▴ 660
6
votes
11
replies
40k
views
Finding The Mean Of Values In A Single Column
r
updated 10.5 years ago by
Michael
54k • written 10.5 years ago by
robjohn7000
▴ 110
35
votes
11
replies
40k
views
9 follow
Is It Possible To Get Fragment Length, Read Length And Number Of Fragments From A Bam/Sam File
bam
next-gen
updated 7.4 years ago by
jerry
▴ 130 • written 11.2 years ago by
samsara
▴ 630
17
votes
25
replies
40k
views
7 follow
Remove columns and rows which have only NAs without deleting all the data
missing data
R
correlation
SNPs
updated 5.5 years ago by
slegotsky
• 0 • written 6.8 years ago by
ElenaL
• 0
58
votes
25
replies
40k
views
15 follow
Tutorial:
Protocol To Downlad TCGA Data From GDC
GDC
methylation
TCGA
updated 14 months ago by
Ram
43k • written 7.8 years ago by
Shicheng Guo
★ 9.4k
160
votes
19
replies
40k
views
16 follow
Why Does Rna-Seq Read Count Fit Poisson Distribution?
rna-seq
modeling
updated 2.4 years ago by
Ram
43k • written 10.6 years ago by
sckinta
▴ 730
36
votes
8
replies
40k
views
9 follow
Difference Between "Mate Pair" And "Pair-End"
paired-end
ngs
library
updated 17 months ago by
cmdcolin
★ 3.8k • written 10.8 years ago by
weiqiangduan
▴ 150
17
votes
8
replies
40k
views
7 follow
LogFC and LogCPM
rna-seq
updated 2.9 years ago by
mohammedtoufiq91
▴ 250 • written 7.0 years ago by
silas008
▴ 170
15
votes
2
replies
40k
views
what is difference between sequence adapter and PCR primer?
adapter
pcr
updated 16 months ago by
Ram
43k • written 9.0 years ago by
xiangwulu
▴ 120
1,000 results • Page
6 of 20
Recent Votes
A: ensembl gene id
A: How to deal with the case that one gene symbol matches multiple ensembl ids?
Answer: DESeq2 error
Answer: Using ggplotly in R
Comment: How to calculate coverage of Nanopore long read data?
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
Recent Locations •
All
Japan,
just now
Bangladesh,
2 minutes ago
Australia,
3 minutes ago
United States,
5 minutes ago
Russia,
5 minutes ago
Canada,
6 minutes ago
India,
6 minutes ago
Recent Awards •
All
Scholar
to
ramiro.barrantes
• 0
Popular Question
to
AshleeThomson
▴ 80
Popular Question
to
vk
▴ 10
Scholar
to
Prawesh
• 0
Popular Question
to
Jean-Karim Heriche
27k
Popular Question
to
Chironex
▴ 40
Scholar
to
rpolicastro
13k
Recent Replies
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thankyou so much Andres for your reply. I think I got your point, just have a couple of quick questions to make it more clear . 1) I do n…
Comment: Duplicated reads (IDs) from nanopore sequencing
by
njornet
▴ 20
I've looked into it and one of the reads with a supplementary alignment has the representative alignment aligning to the + strand and being…
Answer: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
by
kuttibiotech2009
▴ 30
Hello friends, Thank you for your feedback. I understand that the post may not directly relate to bioinformatics. My aim was to share …
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
You do not merge the MEs. It is quite normal that some modules have noisy eigengenes (MEs); WGCNA is an unsupervised analysis overall. By …
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
my blast is latest version 2.15. I don't know what you want me to see in this link.
Answer: scRNAseq quality control weird double curve in nFeature vs nCount plot
by
valdirbarth
▴ 20
Is it possible that the cells that have their VDJ sequenced, those VDJ reads are not contributing to new genes detected? So you might be …
Comment: ggrepel function: geom_text_repel()
by
ntsopoul
▴ 60
The plot looks confusing, chek the documentation there is an attribute called force. If you reduce the value you should get better results.…
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Understood! Gonna try those two!
Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
• 0
Thank u very much!
Comment: How to extract cells of different species after mapping with combined genome?
by
GenoMax
142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
GenoMax
142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation
by
Chen
• 0
that's helpful, thanks :)
Comment: bbmerge (bbmap) ~ error with insert size file output
by
Brian Bushnell
20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Traffic: 1989 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6