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1,000 results • Page 3 of 20
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88
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10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 3 months ago by 39k • written 10.3 years ago by 1.9k
87
votes
13
replies
19k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career general
updated 3 months ago by 39k • written 13.2 years ago by ★ 1.6k
86
votes
29
replies
8.8k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU brexit EBI politics
updated 8 weeks ago by 39k • written 7.0 years ago by 52k
84
votes
16
replies
86k
views
9 follow
Number of mapped reads from BAM file
bam sam reads mapping
updated 6 months ago by ▴ 50 • written 8.2 years ago by ★ 2.6k
84
votes
22
replies
3.7k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 3 months ago by 39k • written 4.0 years ago by ▴ 180
83
votes
34
replies
16k
views
22 follow
Tutorial: Enrichment Analysis, Clustering and Scoring with pathfindR
enrichment R pathway active-subnetwork
updated 11 days ago by • 0 • written 5.0 years ago by ★ 1.3k
83
votes
21
replies
16k
views
16 follow
Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 3 months ago by 39k • written 2.6 years ago by 2.9k
83
votes
30
replies
5.7k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 11 months ago by 39k • written 8.2 years ago by 18k
82
votes
28
replies
28k
views
19 follow
Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor GenVisR Graphics R
updated 3 months ago by 39k • written 7.2 years ago by 20k
82
votes
32
replies
6.6k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
meta
updated 3 months ago by 39k • written 10.5 years ago by ★ 3.6k
82
votes
21
replies
74k
views
13 follow
Tutorial: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools samtools htslib
updated 3 months ago by ★ 3.0k • written 4.9 years ago by ▴ 540
82
votes
19
replies
12k
views
8 follow
Future Directions In Bioinformatics
subjective career
updated 3 months ago by 39k • written 12.6 years ago by ★ 1.5k
81
votes
8
replies
8.0k
views
6 follow
Tutorial: Current Topics in Genome Analysis 2014 (collection of educational lectures)
workshop lectures genomics training
updated 3 months ago by 39k • written 9.0 years ago by 19k
81
votes
21
replies
4.2k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 11 weeks ago by 39k • written 7.0 years ago by ★ 3.2k
81
votes
39
replies
6.2k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
80
votes
23
replies
4.5k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 3 months ago by 39k • written 8.6 years ago by ★ 3.0k
80
votes
2
replies
54k
views
Tutorial: How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 3 months ago by 39k • written 9.9 years ago by 11k
80
votes
34
replies
4.1k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 5 months ago by 39k • written 8.0 years ago by ▴ 520
79
votes
35
replies
8.1k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 10 days ago by • 0 • written 7.6 years ago by ▴ 650
79
votes
22
replies
83k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen sequencing fasta rna r perl
updated 6 months ago by 39k • written 11.6 years ago by ▴ 290
78
votes
31
replies
5.8k
views
14 follow
Forum: Do Bad Questions Even Exist?
biostars general education
updated 3 months ago by 39k • written 12.3 years ago by 10k
78
votes
42
replies
29k
views
25 follow
Tutorial: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
fpkm rna-seq bioconductor
updated 4 weeks ago by 39k • written 9.6 years ago by ★ 7.7k
77
votes
8
replies
12k
views
13 follow
Which program, tool, or strategy do you use to visualize genomic rearrangements?
fusion-genes visualizations rearrangements
updated 8 months ago by 39k • written 7.7 years ago by ★ 1.1k
77
votes
18
replies
44k
views
13 follow
Bioinformaticist Vs. Bioinformatician
subjective
updated 10 months ago by • 0 • written 13.0 years ago by ★ 1.1k
77
votes
22
replies
21k
views
14 follow
Assessing The Quality Of De Novo Assembled Data
assembly next-gen
updated 8 months ago by 39k • written 11.0 years ago by ★ 2.6k
77
votes
27
replies
51k
views
20 follow
How To Write Data In A Granges Object To A Bed File.
bed
updated 9 months ago by ▴ 70 • written 9.5 years ago by ▴ 180
76
votes
70
replies
16k
views
18 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
updated 12 weeks ago by 39k • written 5.3 years ago by 85k
76
votes
35
replies
26k
views
13 follow
Illumina Instrument Type from fastq?
fastq
updated 5 weeks ago by ▴ 20 • written 7.0 years ago by 6.5k
76
votes
86
replies
26k
views
20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
compression bbmap clumpify pigz storage Tool
updated 5 months ago by 130k • written 6.5 years ago by 18k
75
votes
22
replies
50k
views
17 follow
How To Download All Sra Samples At Once ?
geo sra
updated 10 weeks ago by 39k • written 9.3 years ago by ★ 1.5k
74
votes
24
replies
54k
views
16 follow
How To Sort Bed Format File
bed
updated 7 months ago by 154k • written 10.3 years ago by ▴ 430
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 11 months ago by 39k • written 13.0 years ago by 4.5k
74
votes
13
replies
66k
views
10 follow
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r cancer classification
updated 7 months ago by 39k • written 9.6 years ago by ★ 1.2k
73
votes
25
replies
102k
views
14 follow
How to count fastq reads
sequence next-gen fastq reads
updated 11 months ago by 39k • written 8.1 years ago by ▴ 250
73
votes
14
replies
14k
views
15 follow
Tutorial: List Of Bioinformatics Books
books
updated 3 months ago by 39k • written 10.1 years ago by 9.6k
72
votes
18
replies
6.8k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books
updated 3 months ago by 39k • written 9.9 years ago by 7.8k
72
votes
20
replies
24k
views
11 follow
Parsing Ncbi Taxonomic Tree?
ncbi taxonomy python tree
updated 5 months ago by 39k • written 11.6 years ago by ▴ 350
72
votes
60
replies
24k
views
16 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes PLINK PCA VCF
updated 3 months ago by 39k • written 5.7 years ago by 85k
72
votes
48
replies
16k
views
15 follow
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment bwa
updated 3 months ago by 39k • written 10.3 years ago by 33k
72
votes
48
replies
7.1k
views
18 follow
What Kind Of Bioinformatics Tutorials Would You Like To See Online?
education
updated 3 months ago by 39k • written 12.1 years ago by 13k
72
votes
28
replies
5.4k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 11 months ago by 39k • written 8.4 years ago by ▴ 90
72
votes
12
replies
3.8k
views
7 follow
Does Pre-Publishing Open Source Algorithms Hurt Chances Of Getting Published?
publication algorithm
updated 10 months ago by 39k • written 11.8 years ago by ▴ 570
71
votes
17
replies
32k
views
14 follow
How to know that your RNA-seq is stranded or not?
RNA-Seq
updated 4 months ago by ★ 2.9k • written 9.1 years ago by ▴ 600
71
votes
71
replies
25k
views
17 follow
Tool: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling
volcano plot ggplot2 ggrepel bioconductor Tool
updated 8 months ago by ▴ 40 • written 4.8 years ago by 85k
70
votes
19
replies
4.7k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
computational-analysis
updated 11 months ago by 39k • written 7.7 years ago by ▴ 170
70
votes
26
replies
25k
views
15 follow
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 3 months ago by 39k • written 9.3 years ago by 98k
70
votes
20
replies
81k
views
15 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl identifiers mapping
updated 5 months ago by 39k • written 12.6 years ago by ▴ 180
70
votes
16
replies
9.1k
views
11 follow
Creating A New Bioinformatics Unit
core career
updated 3 months ago by 39k • written 11.9 years ago by ▴ 790
69
votes
25
replies
6.3k
views
16 follow
How Do You Explain What You Do To The Guy On The Street Or Your Mum?
general
updated 3 months ago by 39k • written 13.2 years ago by ▴ 190
69
votes
39
replies
3.4k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
meta biostars
updated 26 days ago by 39k • written 6.0 years ago by 13k
1,000 results • Page 3 of 20
Recent Votes
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
A: Mouse promoter regions
Answer: How to get information about promoter from bulk-RNAseq?
A: Extracting Flanking Regions across TSS using R scripts
A: Mouse promoter regions
A: Finding zebrafish promoters ENSEMBL
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Recent Replies
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
and what about enhancer? is it possible to do it from a bulk-RNAseq?
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
yes! clearly the terminology on my side needs to improved!
Comment: How to get information about promoter from bulk-RNAseq? by rpolicastro 12k
Generally speaking, most promoters only initiate transcription for a single gene, with a single gene potentially having multiple promoters …
Answer: How to get information about promoter from bulk-RNAseq? by Trivas ★ 1.2k
I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of th…
Comment: How to add annotation columns with specific colors to the heatmap? by Ram 39k
Show us your exact code - it is quite easy to tweak colors in ComplexHeatmap with the `col=` argument.
Comment: VCF file CSQ flag by Ram 39k
True, but it's not technically impossible to annotate GVCFs, which is why I did not address that point.
Comment: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
@genomax Sorry for the delay in reply. We're still working out the details of what exactly to provide. One idea is to provide just the rep…
Comment: Shannon's Entropy by Sliding Window in R by rohitsatyam102 ▴ 690
Hi Were u able to achieve this?
Comment: Differences in GTF files hg19 and hg38 by GenoMax 130k
Since this is not an answer to the original question do not add it as such. I moved your last comment to the correct spot it should have be…
Comment: VCF file CSQ flag by Pierre Lindenbaum 154k
if your talking about the gvcf produced by HaplotypeCaller with ERC=GVCF, you don't annote g.vcf files , you must first merge the g.vcf.f…
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Ram 39k
https://www.biostars.org/u/127538/ : Please delete this question or it will be deleted by moderators in a few days.
Comment: VCF file CSQ flag by Ram 39k
A gvcf files has blocks for both variant loci and non-variant loci, so you won't see a CSQ for each record, only for those variant loci wit…
Comment: Differences in GTF files hg19 and hg38 by heureuse • 0
Thank you very much. I get it from UCSC.
Comment: [python]sklearn.ensemble.RandomForestClassifier(TypeError: string indices must b by Arup Ghosh 3.2k
This post does not fit the theme of this forum.
Comment: CellRanger problem by Arup Ghosh 3.2k
Try with atleast 32 GB of Memory rather than 16 GB specified by `limitGenomeGenerateRAM` option.
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