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1,000 results • Page
2 of 20
Sort: Views
Rank
Views
Votes
Replies
6
votes
5
replies
5.2k
views
MA plots DESeq: strange MA plots
RNA-Seq
MAplot
DESeq
updated 12 months ago by
Ram
41k • written 8.4 years ago by
VHahaut
★ 1.1k
2
votes
5
replies
5.2k
views
Multiple alignment format (MAF) to VCF
MAF
VCF
updated 8 months ago by
Ram
41k • written 7.6 years ago by
ksw
▴ 40
3
votes
4
replies
5.2k
views
How to visualize sequence quality control distribution
sequence
Fastq
R
updated 8 months ago by
Ram
41k • written 8.0 years ago by
faizlotfy
▴ 30
0
votes
0
replies
5.2k
views
Query deleterious score of SNP mutation for various prediction methods with UniProt ID and mutation position
SNP
updated 11 months ago by
Ram
41k • written 8.5 years ago by
ajingnk
▴ 130
0
votes
1
reply
5.1k
views
Plotting traits on phylogenetic tree in R - issue with aligning traits
traits
graphics
R
phylogenetic-tree
updated 10 months ago by
Ram
41k • written 8.5 years ago by
ch_at
▴ 10
3
votes
6
replies
5.1k
views
RNA-SEQ DEG -- No Control
RNA-Seq
updated 11 months ago by
Ram
41k • written 8.4 years ago by
cacampbell
▴ 50
6
votes
9
replies
5.1k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 8 months ago by
Ram
41k • written 8.6 years ago by
gaurav.singh
▴ 10
1
vote
5
replies
5.1k
views
How To Find The Total Number Of Reads Used By Trinity Assembler To Perform Assembly
trinity
RNA-seq
updated 9 months ago by
Ram
41k • written 9.9 years ago by
bambus0725
▴ 50
0
votes
4
replies
5.1k
views
Sequence alignment length
multiple-sequence-alignment
updated 6 months ago by
Ram
41k • written 6.8 years ago by
biobudhan
▴ 20
0
votes
3
replies
5.1k
views
Detecting outlier loci from pairwise Fst values
outlier
Fst
vcftools
updated 10 months ago by
Ram
41k • written 8.5 years ago by
Earendil
▴ 50
0
votes
9
replies
5.0k
views
Calculating FPKM and TPM by hand from htseq-count output?
RNA-Seq
rna-seq
htseq
FPKM
TPM
updated 3 months ago by
ATpoint
78k • written 4.6 years ago by
Joel Wallenius
▴ 180
1
vote
2
replies
5.0k
views
Transform VCF file for Rqtl input for genetic mapping
SNP
updated 12 months ago by
Ram
41k • written 8.4 years ago by
rajini28m
▴ 10
0
votes
1
reply
5.0k
views
Hapmap to vcf
vcf
hapmap
updated 4 months ago by
Ram
41k • written 5.2 years ago by
shinken123
▴ 150
4
votes
5
replies
5.0k
views
Comparing 2 pathway over-representation analyses
Fishers-exact
pathway-analysis
statistics
updated 11 months ago by
Ram
41k • written 8.6 years ago by
weeweedelivery123
▴ 40
3
votes
4
replies
5.0k
views
What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
RNA-Seq
updated 4 months ago by
tirza.doniger
▴ 10 • written 8.3 years ago by
tiago211287
★ 1.4k
2
votes
4
replies
4.9k
views
What Is A Correct Way To Assess Batch Effect?
batch-effect
updated 9 months ago by
Ram
41k • written 10.5 years ago by
vanzetti
▴ 60
1
vote
2
replies
4.9k
views
demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_strand_adapter --detect_mid_strand_barcodes produce > 90% of unclassified …
demultiplexing
guppy
8 months ago by
andres.firrincieli
3.5k
0
votes
2
replies
4.9k
views
Arlequin Input format for Mismatch distribution
Arlequin
Mismatch-Distribution
Expansion
updated 11 months ago by
Ram
41k • written 8.4 years ago by
rimjhim.roy.ch
▴ 80
0
votes
4
replies
4.8k
views
Tajima'S D Test-Ngs Data
biology
genetics
updated 9 months ago by
Ram
41k • written 11.1 years ago by
jackuser1979
▴ 890
1
vote
3
replies
4.8k
views
Wgcna -Dilemma In Choosing Soft Threshold
r
updated 9 months ago by
Ram
41k • written 10.4 years ago by
pixie@bioinfo
★ 1.5k
7
votes
7
replies
4.7k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 6 months ago by
Ram
41k • written 4.9 years ago by
stu111538
▴ 80
6
votes
7
replies
4.7k
views
Creation Of A .Bed File From .Txt
plink
updated 8 months ago by
Ram
41k • written 9.8 years ago by
tom.d.brocklehurst
• 0
6
votes
6
replies
4.7k
views
MSD calculations vs time
MDsimulation
python
computational-biology
updated 11 months ago by
Ram
41k • written 8.4 years ago by
contact.lifesciences.inc
▴ 30
0
votes
1
reply
4.7k
views
Convert exonerate output to EVM gff3 format error
evidencemodeler
evm
gff3
exonerate
updated 9 months ago by
Ram
41k • written 8.6 years ago by
sun.nation
▴ 140
0
votes
6
replies
4.6k
views
Installing BioLinux 8 on Ubuntu 15.04
ubuntu
biolinux
updated 10 months ago by
Ram
41k • written 8.5 years ago by
waqas.ahmad5231
• 0
0
votes
3
replies
4.6k
views
VarScan output different when choosing VCF and variant missing?
VarScan
VCF
Exome-Seq
Variant-Calling
updated 12 months ago by
Ram
41k • written 8.7 years ago by
Pascal
▴ 250
1
vote
2
replies
4.6k
views
Isfinder And Integrall Databases
metagenomics
INTEGRALL
ISFinder
BLAST
updated 8 months ago by
Ram
41k • written 9.8 years ago by
alielbehery
▴ 10
1
vote
4
replies
4.6k
views
TCGA data(RPKM) differential gene expression
rna-seq
R
TCGA
RPKM
IPA
4 months ago by
realnewbie
▴ 30
0
votes
5
replies
4.6k
views
Error during Trinity running with the recent version?
next-gen
Assembly
RNA-Seq
updated 9 months ago by
Ram
41k • written 8.6 years ago by
seta
★ 1.8k
1
vote
1
reply
4.6k
views
Downloading GenomeStudio on Mac
methylation-module
genome-studio
updated 8 months ago by
Ram
41k • written 5.1 years ago by
daniellemo
▴ 10
3
votes
6
replies
4.5k
views
Why Do I Get A Makeblastdb Error: File Does Not Match Input Format Type, Default Input Type Is Fasta
genomics
blast-plus
updated 9 months ago by
Ram
41k • written 10.0 years ago by
alok.helix
▴ 120
10
votes
14
replies
4.5k
views
ATAC-seq data and deepTools: Small detail with impact on output
bigwig
read-length
deeptools
ATAC-seq
updated 5 months ago by
Ram
41k • written 3.8 years ago by
gable_works
▴ 50
2
votes
7
replies
4.5k
views
SRA toolkit internet settings
sratoolkit
fastq-dump
sequencing
RNA-Seq
updated 5 months ago by
Ram
41k • written 7.3 years ago by
BCArg
▴ 70
3
votes
2
replies
4.5k
views
How to plot a circular clustered heatmap with dendrogram
circular heatmap
updated 3 months ago by
logbio
▴ 30 • written 4.0 years ago by
The
▴ 180
6
votes
7
replies
4.4k
views
8 follow
desktop bioinformatics platform specs
hardware
desktop
updated 11 months ago by
Ram
41k • written 8.4 years ago by
rob234king
▴ 610
0
votes
3
replies
4.4k
views
Annovar And Ubuntu 12.10 - Database Download
ubuntu
annovar
updated 8 months ago by
Ram
41k • written 10.7 years ago by
Achim
• 0
2
votes
12
replies
4.4k
views
Adding barcodes to forward and reverse reads after sequencing
obitools
barcoding
next-gen-sequencing
updated 9 months ago by
Ram
41k • written 8.6 years ago by
cmogren
▴ 20
1
vote
2
replies
4.3k
views
i have installed seaborn with python2.7 but when I am importing seaborn through terminal itz showing following error:
seaborn
python2.7
updated 11 months ago by
Ram
41k • written 6.8 years ago by
naveen100787
• 0
3
votes
5
replies
4.3k
views
Sum of TPM values across all genes separates tumors from normals in some TCGA data sets -- what gives?
rsem
RNA-Seq
tcga
updated 11 months ago by
Ram
41k • written 8.5 years ago by
naxerova
▴ 20
1
vote
0
replies
4.3k
views
how to convert .geno/.snp/.ind to .bed/.bim/.fam (ped plink format) in Windows
plink
genomes
ancestrymap
updated 4 months ago by
Ram
41k • written 7.4 years ago by
Ghoul
▴ 10
0
votes
0
replies
4.3k
views
vcftools FORMAT ID error during filtering
vcf
vcftools
updated 9 months ago by
Ram
41k • written 8.6 years ago by
wickell.david
• 0
1
vote
3
replies
4.2k
views
Beagle Imputation Markers List
imputation
updated 9 months ago by
Ram
41k • written 10.5 years ago by
avik
▴ 60
3
votes
2
replies
4.2k
views
Plotting "sequence alignments" in python (matplotlib)?
matplotlib
python
sequencing
gene
updated 11 months ago by
Ram
41k • written 8.4 years ago by
knpayne2
• 0
1
vote
4
replies
4.2k
views
design primer for alternative splicing events
alternative-splicing
primer-design
RNA-Seq
updated 10 months ago by
Ram
41k • written 8.5 years ago by
pengchy
▴ 450
1
vote
1
reply
4.2k
views
deflated lambda value but inflated qq plot
r
gwas
qqplot
updated 11 months ago by
Ram
41k • written 8.5 years ago by
muralinmars
▴ 100
0
votes
9
replies
4.2k
views
Merge BAM files for a lane with multiplexed samples.
multiplexing
samtools
baserecalibrator
gatk
updated 11 months ago by
Ram
41k • written 8.5 years ago by
Timothée Flutre
▴ 20
7
votes
4
replies
4.2k
views
IGV genome browser problems
igv
updated 11 months ago by
Ram
41k • written 8.4 years ago by
Marvin
▴ 210
0
votes
8
replies
4.2k
views
Downloading single cell data from NCBI
ncbi
rna-seq
fastq-dump
single-cell
updated 3 months ago by
Ram
41k • written 4.9 years ago by
V
▴ 380
0
votes
4
replies
4.1k
views
problem in installing zlibbioc library
R
updated 10 months ago by
Ram
41k • written 8.5 years ago by
m_punisher6
• 0
3
votes
4
replies
4.1k
views
Atypical volcano plot RNA-seq
volcano-plot
RNA-seq
deseq2
updated 3 months ago by
Ram
41k • written 5.1 years ago by
Teresa
▴ 20
1,000 results • Page
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The number of bases is still different even if `tpe` and `tbo` are trailing after adapter and quality trimming. So far for the RNA-seq proj…
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No there should not be much impact unless one of the reads has become substantially short compared to its mate. Strictly speaking you don't…
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