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385 results • Page
3 of 8
Sort: Views
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Views
Votes
Replies
7
votes
8
replies
2.4k
views
Forum:
Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence
genome
updated 11 months ago by
Ram
43k • written 4.1 years ago by
dulankak
▴ 30
15
votes
10
replies
2.4k
views
6 follow
Forum:
help identifying bioinformatics operations tools
database
next-gen
operations
genomics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
jsmedmar
▴ 80
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
10
votes
7
replies
2.3k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 24 months ago by
sakichwan
▴ 20
11
votes
9
replies
2.3k
views
Forum:
Survey: help define Gencode and NCBI primary transcripts
refseq
ensembl
gencode
ncbi
transcript
updated 12 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
28
votes
15
replies
2.3k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.9 years ago by
ivan.radonov
▴ 10
30
votes
16
replies
2.3k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 11 months ago by
Ram
43k • written 4.1 years ago by
nkg.bb
• 0
6
votes
1
reply
2.3k
views
Forum:
How to become employable in Bioinformatics, starting with degree and experience in CS/Software Engineering?
computer-scientist
software-engineer
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Fanta
• 0
0
votes
1
reply
2.2k
views
Forum:
How's the bioinformatics engineering path? How to become a bioinformatics engineer?
machine-learning
Bioinformatics-engineer
updated 11 months ago by
Ram
43k • written 4.0 years ago by
SupBioInformatics
▴ 70
0
votes
4
replies
2.2k
views
Forum:
Multiple Sequence Alignment Applications
snp
updated 11 months ago by
Ram
43k • written 4.8 years ago by
manimphil89
• 0
4
votes
2
replies
2.2k
views
Forum:
wet-lab vs dry-lab scientists
cv
language
updated 11 months ago by
Ram
43k • written 4.3 years ago by
igor
13k
10
votes
6
replies
2.2k
views
Forum:
How to acknowledge in the paper a reference genome that hasn't been published yet?
reference
paper
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ciemanek
▴ 140
31
votes
16
replies
2.2k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Antonio R. Franco
★ 5.1k
19
votes
14
replies
2.2k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 months ago by
Jeremy Leipzig
22k • written 8 months ago by
vincenthus
▴ 70
15
votes
9
replies
2.2k
views
6 follow
Forum:
[Opinion] - What alignment software do you use?
next-gen
alignment
updated 12 months ago by
Ram
43k • written 6.1 years ago by
Andrew_MacGregor
▴ 30
7
votes
4
replies
2.2k
views
Forum:
How hard it is to get a bioinformatics degree in one country but find a career in another country?
career
Masters
updated 11 months ago by
Ram
43k • written 6.0 years ago by
dominic.dong
▴ 10
26
votes
27
replies
2.2k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 4 months ago by
dsull
★ 6.0k • written 4 months ago by
Rozita
▴ 40
10
votes
15
replies
2.2k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
14
votes
10
replies
2.2k
views
Forum:
WGBS alignment with BitMapperBS
BitMapperBS
bismark
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Shicheng Guo
★ 9.4k
3
votes
6
replies
2.2k
views
Forum:
Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R
Shapiro-Wilk
Limma
Mann-Whitney
updated 11 months ago by
Ram
43k • written 4.0 years ago by
innyus
▴ 40
3
votes
14
replies
2.1k
views
6 follow
Forum:
Search for gene variants
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Rm
8.3k
16
votes
8
replies
2.1k
views
8 follow
Forum:
What are the most important unresolved problems in Bioinformatics?
bioinformatics
updated 10 months ago by
Ram
43k • written 7.6 years ago by
chen
★ 2.5k
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 4 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
21
votes
15
replies
2.1k
views
9 follow
Forum:
Working abroad without a PhD
career
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Rox
★ 1.4k
7
votes
20
replies
2.1k
views
Forum:
NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR
RNA-Seq
TopHat
updated 12 months ago by
Ram
43k • written 3.3 years ago by
mikefeixu
▴ 10
0
votes
6
replies
2.1k
views
7 follow
Forum:
Up-to-date RNA-Seq Analysis Training/Courses/Papers
software-error
updated 11 months ago by
Ram
43k • written 5.7 years ago by
kullboys
• 0
23
votes
11
replies
2.1k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 11 months ago by
Ram
43k • written 3.8 years ago by
nkinney06
▴ 140
1
vote
8
replies
2.1k
views
Forum:
Memory-driven computing accelerates genomic data processing
HPC
updated 11 months ago by
Ram
43k • written 5.3 years ago by
5heikki
11k
21
votes
11
replies
2.0k
views
Forum:
Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Mozart
▴ 330
7
votes
8
replies
2.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
11 months ago by
K
• 0
7
votes
4
replies
2.0k
views
Forum:
Bioinformatics / Computational Biology PhD
Computational-Biology
bioinformatics
PhD
updated 10 months ago by
Ram
43k • written 8.2 years ago by
MaLMat
• 0
5
votes
8
replies
2.0k
views
7 follow
Forum:
Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by
Ram
43k • written 5.7 years ago by
BioICoder
▴ 40
17
votes
17
replies
2.0k
views
6 follow
Forum:
Journal for beginners
journal
updated 12 months ago by
Ram
43k • written 6.2 years ago by
heref
▴ 20
23
votes
12
replies
2.0k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 11 months ago by
Ram
43k • written 3.9 years ago by
David Langenberger
11k
22
votes
8
replies
2.0k
views
10 follow
Forum:
Is there any online course for bioinformatics right now or in the next two or three months?
online-course
mooc
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Eugenie
▴ 50
9
votes
6
replies
2.0k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 8 months ago by
ATpoint
82k • written 18 months ago by
dlaehnemann
▴ 30
12
votes
0
replies
2.0k
views
Forum:
Free Bioinformatics Courses(Curriculum)
ossu
course
Curriculum
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Leite
★ 1.3k
25
votes
7
replies
1.9k
views
6 follow
Forum:
What Are The Best Bioinformatics Course Materials [2020]
course
teaching
updated 12 months ago by
Ram
43k • written 3.4 years ago by
Carlo Yague
8.7k
17
votes
14
replies
1.9k
views
10 follow
Forum:
What would be the trend in next few years in NGS era?
NGS
sequencing
updated 11 months ago by
Ram
43k • written 5.5 years ago by
ahmad mousavi
▴ 800
7
votes
7
replies
1.9k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 4 weeks ago by
Dunois
★ 2.5k • written 4 weeks ago by
AdviceSeeker
• 0
6
votes
5
replies
1.9k
views
Forum:
Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by
Ram
43k • written 4.3 years ago by
melissachua90
▴ 70
7
votes
4
replies
1.9k
views
Forum:
I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow
galaxy
updated 11 months ago by
Ram
43k • written 5.6 years ago by
dego999
• 0
0
votes
3
replies
1.9k
views
Forum:
European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO
EGA
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Shicheng Guo
★ 9.4k
3
votes
4
replies
1.9k
views
Forum:
Recommendation for applied bioinformatics labs focusing on cancer biology
cancer-genomics
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Wenhu_Cao
▴ 100
18
votes
16
replies
1.9k
views
Forum:
Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene-prioritization
updated 11 months ago by
Ram
43k • written 5.6 years ago by
prasadhendre
▴ 20
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 11 months ago by
Ram
43k • written 4.4 years ago by
c_u
▴ 520
7
votes
10
replies
1.8k
views
Forum:
Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by
Ram
43k • written 5.7 years ago by
SeYu
• 0
7
votes
6
replies
1.8k
views
Forum:
Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by
Ram
43k • written 4.5 years ago by
kstangline
▴ 80
385 results • Page
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Recent Votes
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Details on salmon index
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
You can have a look on my answer. I have post it below.
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
Here is my script that can be used to calculate how much degree that different factors contribute to PCA variance (PC1 and PC2). # …
Comment: Details on salmon index
by
Lorenzo
• 0
Thank you so much for the beautiful explanation. Just one more curiosity. So in the first versions Salmon utilized RapMap to index and then…
Comment: What marks a De-Novo Genome assembly as FAILED?
by
dthorbur
★ 2.0k
I'm a little confused about your experimental design. Are you making 45 different assemblies? Or are all the samples from the same individu…
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ATpoint
82k
You should be stating how you constructed the index, and include the actual lines for the problematic genes from the abundance files. Note …
Comment: zero TPM for many gene including housekeeping when using kallisto
by
dariober
14k
You could try [salmon](https://combine-lab.github.io/salmon/getting_started/) to see if the problem is with kallisto or with the pseudo-ali…
Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err
by
GenoMax
142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input?
by
Pierre Lindenbaum
161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
DGTool
▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
b.contreras.moreira
▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
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