updated 10 months ago by
Ram
39k
•
written 7.3 years ago by
carabiniero8
▴
10
2
votes
1
reply
5.9k
views
6
votes
7
replies
5.9k
views
5
votes
3
replies
5.8k
views
3
votes
4
replies
5.8k
views
updated 10 months ago by
Ram
39k
•
written 7.5 years ago by
barbara.mariotti81
•
0
3
votes
6
replies
5.8k
views
1
vote
5
replies
5.7k
views
updated 10 months ago by
Ram
39k
•
written 7.5 years ago by
bioinforesearchquestions
▴
370
1
vote
1
reply
5.7k
views
1
vote
3
replies
5.7k
views
5
votes
4
replies
5.7k
views
updated 10 months ago by
Ram
39k
•
written 7.4 years ago by
hirak.sarkar
▴
20
1
vote
7
replies
5.6k
views
updated 8 days ago by
dare_devil
★
3.1k
•
written 5.4 years ago by
win
▴
940
1
vote
1
reply
5.6k
views
updated 7 months ago by
Ram
39k
•
written 7.8 years ago by
sun.nation
▴
140
1
vote
5
replies
5.6k
views
updated 6 months ago by
Ram
39k
•
written 7.9 years ago by
maildiary.arnab
•
0
0
votes
3
replies
5.6k
views
3
votes
6
replies
5.6k
views
updated 10 months ago by
Ram
39k
•
written 9.4 years ago by
sally.boyd
▴
10
1
vote
4
replies
5.6k
views
3
votes
4
replies
5.6k
views
updated 9 months ago by
Ram
39k
•
written 7.6 years ago by
philipovic
▴
20
9
votes
1
reply
5.6k
views
updated 9 months ago by
Ram
39k
•
written 7.6 years ago by
James Ashmore
★
3.4k
1
vote
7
replies
5.5k
views
1
vote
1
reply
5.5k
views
3
votes
3
replies
5.4k
views
updated 9 months ago by
Ram
39k
•
written 7.7 years ago by
Bioinformatist Newbie
▴
270
1
vote
10
replies
5.4k
views
updated 8 weeks ago by
Ram
39k
•
written 6.8 years ago by
purpledora100
•
0
2
votes
6
replies
5.4k
views
1
vote
3
replies
5.4k
views
updated 11 weeks ago by
Ram
39k
•
written 5.6 years ago by
natasha.sernova
★
3.9k
10
votes
15
replies
5.3k
views
0
votes
7
replies
5.3k
views
updated 7 weeks ago by
Ram
39k
•
written 6.4 years ago by
ac.research
▴
30
5
votes
1
reply
5.3k
views
2
votes
1
reply
5.3k
views
updated 10 months ago by
Ram
39k
•
written 7.3 years ago by
mrodrigues.fernanda
▴
50
0
votes
9
replies
5.3k
views
9
votes
4
replies
5.3k
views
1
vote
0
replies
5.3k
views
1
vote
2
replies
5.3k
views
1
vote
2
replies
5.2k
views
0
votes
3
replies
5.2k
views
updated 5 months ago by
Roy.anupama11
•
0
•
written 4.3 years ago by
hirahameed222
•
0
0
votes
4
replies
5.2k
views
4
votes
3
replies
5.2k
views
updated 11 months ago by
Ram
39k
•
written 8.2 years ago by
weeweedelivery123
▴
40
1
vote
4
replies
5.2k
views
updated 8 months ago by
Ram
39k
•
written 8.8 years ago by
marina-orlova
▴
80
1
vote
6
replies
5.1k
views
0
votes
8
replies
5.1k
views
updated 3 months ago by
Ram
39k
•
written 8.7 years ago by
bioinforupesh2009.au
▴
140
0
votes
2
replies
5.1k
views
0
votes
0
replies
5.1k
views
3
votes
2
replies
5.1k
views
updated 8 months ago by
Ram
39k
•
written 7.8 years ago by
Sarah Diana
•
0
1
vote
2
replies
5.1k
views
0
votes
2
replies
5.0k
views
0
votes
4
replies
5.0k
views
updated 1 day ago by
Franco
•
0
•
written 5.6 years ago by
ac.research
▴
30
1
vote
4
replies
5.0k
views
updated 5 months ago by
Ram
39k
•
written 8.0 years ago by
vasilislenis
▴
150
2
votes
6
replies
5.0k
views
updated 7 months ago by
Ram
39k
•
written 7.8 years ago by
eric.kern13
▴
240
0
votes
2
replies
5.0k
views
updated 5 months ago by
Ram
39k
•
written 8.0 years ago by
jasbadesha27
•
0
8
votes
3
replies
5.0k
views
updated 10 months ago by
Ram
39k
•
written 7.5 years ago by
dharshank.1096
▴
30
6
votes
5
replies
5.0k
views
0
votes
2
replies
5.0k
views
updated 10 months ago by
Ram
39k
•
written 7.4 years ago by
zhengyunchaosky
▴
20
Recent Votes
Recent Locations •
All
United States, 1 minute ago
United States, 2 minutes ago
Brazil, 3 minutes ago
United States, 4 minutes ago
United States, 5 minutes ago
Stony Brook University, NY, 6 minutes ago
Bologna, 7 minutes ago
Recent Awards •
All
Popular Question to
Payal
▴
140
Scholar to
Rory Stark
★
1.8k
Popular Question to
v.berriosfarias
▴
100
Popular Question to
Denis
▴
270
Popular Question to
chi.delta
▴
40
Recent Replies
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
by
Yeeshouw
•
0
I see, I believe I was running an older version or have missed the option, I have updated to v2.10.5 and can see this option now.
Thank you…
Comment: Saving results from yeastgenome.org blastp search
by
GenoMax
130k
Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI …
Answer: Differences in GTF files hg19 and hg38
by
GenoMax
130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for.
chr1 HAVANA…
Comment: Is PanCan data microarray or rna-seq
by
GenoMax
130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions
by
Sasha
▴
280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq
by
solarchan7
•
0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c
by
Darked89
4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome
by
Basti
★
1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202
https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions
by
ATpoint
72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
Answer: sgRNA design
by
ATpoint
72k
gRNAs are single-stranded and by this they have a strand-specificity (depends where the PAM is) and that gives them an orientation.
Answer: counts matrix should be numeric, currently it has mode: character when using a c
by
ATpoint
72k
You have commas as decimal delimiters which interpreted as text. Just replace by dot and make numeric:
```r
d <- data.frame(A=c("1,2", "3,…
Comment: snps from empty well, Illumina Sequencing
by
GenoMax
130k
> I receive illumina sequencing files with 96 wells, our lab leaves one
> well empty. When I process the files with a SNP calling pipeline …
Answer: counts matrix should be numeric, currently it has mode: character when using a c
by
Darked89
4.4k
You can try:
counts_data <- read.csv2("normalized.csv", header = TRUE)
But as far as I know DESeq2 requires raw counts as inpu…
Traffic: 2402 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6