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122,027 results • Page
583 of 2441
Sort: Rank
Rank
Views
Votes
Replies
4
votes
6
replies
1.9k
views
What are the rules for the basic statistic of de novo assembly in RNAseq?
Assembly
Trinity
RNAseq
4.1 years ago by
Riku
▴ 80
1
vote
0
replies
890
views
allele balance gatk
NGS
gatk
Allele-balance
updated 3.6 years ago by
Ram
45k • written 4.1 years ago by
Sabeen
▴ 30
1
vote
2
replies
3.1k
views
How to install hisat2 on Mac OS Big Sur
hisat2
anaconda
bioconda
4.1 years ago by
Atsunop
• 0
9
votes
4
replies
2.5k
views
Illumina Q score
Illumina
quality-score
updated 2.1 years ago by
Ram
45k • written 4.1 years ago by
A_heath
▴ 170
4
votes
0
replies
1.6k
views
Job:
20 Fully funded PhD studentships in Quantitative Biology in Lausanne, Switzerland
phd
studentship
fellowship
updated 2.3 years ago by
Ram
45k • written 4.1 years ago by
Christophe Dessimoz
▴ 740
1
vote
5
replies
2.1k
views
Speeding up HaplotypeCaller analysis
Linux
CPU
HaplotypeCaller
updated 4.1 years ago by
Pierre Lindenbaum
166k • written 4.1 years ago by
kk.mahsa
▴ 150
6
votes
3
replies
2.4k
views
TMM followed by inverse normal transform
edgeR
GTEx
RNAseq
updated 4.1 years ago by
Gordon Smyth
★ 8.3k • written 4.1 years ago by
joseph.a.decorte
▴ 10
0
votes
0
replies
1.1k
views
Job:
Senior Bioinformatician at AstraZeneca - Biology/Chemistry Interface and Proteomics Research (Cambridge, UK)
AstraZeneca
omics
drug-discovery
updated 2.7 years ago by
Ram
45k • written 4.1 years ago by
Sergio Martínez Cuesta
▴ 230
4
votes
3
replies
3.7k
views
UCSC liftover
UCSC
PyLiftover
liftover
updated 4.1 years ago by
Luis Nassar
▴ 670 • written 4.3 years ago by
jhy
▴ 10
1
vote
2
replies
1.5k
views
How to download GTEx figure from USCS genome browser
UCSC
GTEx
updated 4.1 years ago by
Luis Nassar
▴ 670 • written 4.2 years ago by
Shicheng Guo
★ 9.6k
0
votes
5
replies
2.3k
views
what does mean this error ? "(ERR): hisat2-align exited with value 1" in mapping long noncoding RNAs
long-non-coding-RNA
lncRNA
updated 18 months ago by
Ram
45k • written 4.1 years ago by
reza
• 0
0
votes
0
replies
549
views
Can I adding (multiply ) the P-value of one Transcriptioin factor identified by two motif?
motif
4.1 years ago by
yli13
• 0
0
votes
1
reply
1.1k
views
Transcription Factor Functions
factor
database
transcription
updated 4.1 years ago by
Alex Reynolds
36k • written 4.1 years ago by
axolotl
• 0
6
votes
4
replies
2.1k
views
MEME suite compare motifs between species
motifs
MEME
compare
species
4.1 years ago by
Rafael Soler
★ 1.3k
0
votes
1
reply
1.2k
views
Has anyone here used the MAC tool for merging assemblies?
assembly
WGS
genomes
updated 4.1 years ago by
Michael
56k • written 4.1 years ago by
jmgreenb420
▴ 10
1
vote
2
replies
1.0k
views
Different Gene Lengths and Expected Gene Lengths from Sample to Sample
rnaseq
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
jmannhei
▴ 10
2
votes
2
replies
2.1k
views
Why Ks value is NA in KaKs calculator
KaKs
software error
gene
updated 4.1 years ago by
fznajar
• 0 • written 6.3 years ago by
Laura_zz
• 0
0
votes
2
replies
1.4k
views
Mapping reads to 5 UTR, 3 UTR and CDS
UTR
mapping
CDS
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
student12
• 0
1
vote
1
reply
771
views
What is the difference between GERP S and GERP N?
annotation
GERP
pathogenic
genomics
updated 3.7 years ago by
gubrins
▴ 350 • written 4.1 years ago by
DN99
▴ 20
0
votes
1
reply
1.3k
views
Pan-genome visualization similar to anvio?
analysis
pangenome
updated 4.1 years ago by
andres.firrincieli
3.9k • written 4.1 years ago by
goatsrunfaster
▴ 60
5
votes
1
reply
1.5k
views
What does samtools mean by 'orientation' when marking duplicates?
read_orientation
samtools
htslib
updated 4.1 years ago by
aw7
▴ 390 • written 4.2 years ago by
Thomas
▴ 180
0
votes
4
replies
2.1k
views
Rare variant association analysis (SKAT-O) - Power calculation
association
analysis
SKAT-O
.
Genetics
4.1 years ago by
Alexandros.Frydas
▴ 30
0
votes
0
replies
613
views
Using UnifiedGenotyper on single chromosome without coordinates
GATK
4.1 years ago by
shpak.max
▴ 60
3
votes
9
replies
3.8k
views
Filter DGElist object: keep only genes expressed in sample at the same time as a particular gene of interest
edger
RNA-seq
dgelist
R
4.1 years ago by
Ondina
▴ 100
1
vote
1
reply
942
views
Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer?
rabix
cwl
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
fargalaxy1
• 0
7
votes
9
replies
7.6k
views
Merge contigs in fasta file
fasta
merge
contigs
updated 4.1 years ago by
setschmann
▴ 10 • written 6.4 years ago by
Rubal
▴ 350
1
vote
2
replies
1.9k
views
Remote blast query limit
remote
blast
4.1 years ago by
timothy.kirkwood
▴ 140
1
vote
1
reply
874
views
Cleaning Blast results
codes
BLASTP
multiple
scripts
hits
updated 4.1 years ago by
lieven.sterck
16k • written 4.1 years ago by
Ayesha
• 0
0
votes
0
replies
1.9k
views
Job:
We are looking for bioinformaticians for collaboration
startup
bioinformaticians
updated 2.3 years ago by
Ram
45k • written 4.1 years ago by
Anastasiya M
• 0
0
votes
2
replies
1.1k
views
fetch out common/conserved genes from a bunch of bacteria species
common
analysis
genes
comparative
4.1 years ago by
zhangdengwei
▴ 210
0
votes
6
replies
3.8k
views
Transcripts mapping using Salmon
Salmon
mRNA-seq
RNA-seq
total
4.1 years ago by
g.wang2
▴ 10
1
vote
1
reply
1.7k
views
SCENIC-openloom not working
sc-rna
SCENIC
sequencing
updated 2.1 years ago by
kyriakds
• 0 • written 4.1 years ago by
Lekshmy
▴ 10
1
vote
6
replies
3.1k
views
Use of GenotypeGVCFs in population genetic studies
WGS
Introgression
GenotypeGVCFs
ADMIXTURE
GATK
updated 4.1 years ago by
vdauwera
★ 1.2k • written 4.1 years ago by
kk.mahsa
▴ 150
1
vote
4
replies
1.5k
views
Cutoff value for shrunken logFC
deseq
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
official.profile
▴ 20
1
vote
1
reply
2.6k
views
Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer/tissue type)
GTEX
UCSCXenaTools
TCGA
RNA-seq
Xena
updated 4.1 years ago by
dsull
★ 7.7k • written 4.1 years ago by
erica.fary
▴ 20
0
votes
0
replies
788
views
Community detection protocol and failed gene enrichment
igraph
detection
community
4.1 years ago by
k0stasmp
▴ 10
2
votes
3
replies
2.5k
views
DESeq2 Not full Rank - Age & Medication
medication
DESeq2
age
rank
updated 4.1 years ago by
Devon Ryan
105k • written 4.1 years ago by
Anand
▴ 40
2
votes
3
replies
2.8k
views
Racon command line with paired-ends Illumina reads
Illumina
Racon
updated 2.1 years ago by
Ram
45k • written 4.1 years ago by
A_heath
▴ 170
1
vote
4
replies
1.3k
views
Determining LOC coordinate from GFF3 start column
GFF3
4.1 years ago by
Simon
• 0
1
vote
2
replies
1.5k
views
Polygenic Risk Score Plot
Risk
Plink
Polygenic
PRS
Score
4.1 years ago by
Muhammad
▴ 10
2
votes
1
reply
1.1k
views
Retrieving sequences and Blast them
blast
updated 4.1 years ago by
Philipp Bayer
8.9k • written 4.1 years ago by
Ric
▴ 440
1
vote
2
replies
1.1k
views
Specifications for annotation names or symbols?
specification
annotation
4.1 years ago by
Alex Reynolds
36k
0
votes
1
reply
1.1k
views
DESeq2
DEGs
updated 4.1 years ago by
Hyper_Odin
▴ 320 • written 4.1 years ago by
Anupama
• 0
4
votes
9
replies
4.8k
views
Need help to remove NA values from data frame
DeSEQ2
R
updated 4.1 years ago by
ponganta
▴ 590 • written 4.1 years ago by
anasjamshed
▴ 140
2
votes
2
replies
1.9k
views
Merging .gam files
vg
gam
updated 4.1 years ago by
ernestolowy
• 0 • written 5.4 years ago by
elizabethmareeross
▴ 30
4
votes
4
replies
3.0k
views
Good or bad idea to annotate with newer genome build?
array
methylation
beadchip
build
annotation
4.1 years ago by
Pratik
★ 1.1k
3
votes
9
replies
3.5k
views
Fasta.fai file error
bedtools
updated 4.1 years ago by
John Marshall
3.1k • written 4.1 years ago by
stb1132
• 0
0
votes
0
replies
879
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac
scATAC
4.1 years ago by
ahmad mousavi
▴ 800
1
vote
1
reply
1.4k
views
RRBS data analysis using Bismark and methylkit
RRBS
methylkit
Bismark
WGBS
updated 4.1 years ago by
Papyrus
★ 3.1k • written 4.1 years ago by
Arindam Ghosh
▴ 550
5
votes
1
reply
2.7k
views
ARACNE-AP output for Viper R package
ARACNE
ARACNE-AP
Viper
updated 4.1 years ago by
Scott
▴ 30 • written 4.3 years ago by
Luna_P
▴ 20
122,027 results • Page
583 of 2441
Recent Votes
Answer: Modeling/simulations using SNPs data
what is the output of 'samtools coverage'
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
A: Filtering HmmScan Domain Results
Answer: Should differential expression analysis be incorporated in cross validation for
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Answer: Modeling/simulations using SNPs data
by
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★ 2.2k
I would recommend looking into using [SLiM][1] for forward-time population genetic simulations. It's widely used and very well documented, …
Answer: Strugling on the 3'rule of HGVS
by
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23k
> chrM : m.57T>TC, but according to the 3'rule it should be named m.60T>TC (if I understood correctly). no that cannot be shifted, like yo…
Answer: Extract fastq sequences based on date/time (which is in the header)
by
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This tool can be helpful: https://github.com/angelovangel/nanotimes
Answer: Filter nanopore fastq files by start time
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This is an efficient tool: https://github.com/angelovangel/nanotimes
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by
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22k
Standard enrichement tools, like Metascape, Enrichr or David assume that under a model of no pathway being particularly involved in what yo…
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
k-tarasov
▴ 10
Thanks to colindaven answer, I managed to travel by hyperlinks to the source of the discrepancy. It seems that Nanopore tools compute *ave…
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
colindaven
8.0k
I agree completely. I think the cause is well discussed here : https://github.com/OpenGene/fastplong/issues/20 `fastplong` currently sti…
Comment: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
k-tarasov
▴ 10
Thank you for answer. No, I am looking at all reads before appllying any filters. There are 2,429,312 raw reads, and in 16s-wf pipeline I …
Comment: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
GenoMax
154k
Are you only looking at reads that satisfy this filter (which is in your command line in GitHub post) in your `seqkit` and `fastqc` reports…
Comment: Configuration file for DSP WTA
by
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154k
> data starting from Fastq Generally did this with the entire flowcell folder and not fastq files. The data needs to be demultiplexed in a…
Answer: How to create a consensus of a contig with samtools or bbmap?
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Your first command outputted SAM rather than BAM, and SAM without a header (no `-h`) option. If you used `-o contig_1.bam` it would have w…
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Seconding this, I also felt completely lost what this actually does. @OP, you need to learn to make sharp, concise bulletpoints advertising…
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I would not do correlation analysis like this, I don't see how this makes any sense. Integration is possible but cumbersome. Instead, use `…
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From databases dedicated to the specific disorder, GWAS catalog, Disgenet, OMIM and Literature searches across Pubmed.
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Provide a vector of representative normal cells from each normal sample in the `norm.cell.names` option.
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