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13
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8
replies
1.8k
views
Forum: Starting a collective twitter account "Bioinformatician Underhood"
sci-comm
updated 2.9 years ago by 43k • written 3.0 years ago by ★ 2.9k
2
votes
2
replies
862
views
Forum: https://biostar.slack.com account
ngs
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 30
6
votes
12
replies
14k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 14 months ago by 43k • written 7.6 years ago by ▴ 20
0
votes
2
replies
797
views
Forum: Phylogenomic study: suggestions and tips
evolution species genus phylogenomic phylogenetics
3.0 years ago by tiagobellintani ▴ 40
0
votes
0
replies
450
views
Forum: How is is is xxx?
sum-of-airs
3.0 years ago by aa • 0
290
votes
55
replies
16k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 15 months ago by 43k • written 11.0 years ago by 10k
14
votes
14
replies
2.7k
views
7 follow
Forum: Bioinformatics startup market analysis
startup
written 3.1 years ago by ▴ 30
17
votes
21
replies
3.5k
views
8 follow
Forum: bioinformatics thesis
thesis
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 40
0
votes
0
replies
727
views
Forum: CADD Error in EXOMISER
exomiser cadd
3.1 years ago by shwetan • 0
3
votes
1
reply
741
views
Forum: Interested in benchmarks? Please take our survey!
benchmarking
3.1 years ago by Jeremy Leipzig 22k
2
votes
2
replies
736
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 3.1 years ago by 88k • written 3.1 years ago by ▴ 20
18
votes
9
replies
2.1k
views
8 follow
Forum: Future of Microarrays
Microarrays
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 10
8
votes
8
replies
3.1k
views
6 follow
Forum: R - A bioinformatic analysis programming language for NGS
NGS R
updated 2.9 years ago by 43k • written 3.1 years ago by ▴ 420
15
votes
7
replies
1.6k
views
6 follow
Forum: What to put in my Github
Github
updated 3.1 years ago by ★ 3.2k • written 3.1 years ago by ▴ 20
11
votes
6
replies
1.5k
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
3.1 years ago by tiagobellintani ▴ 40
2
votes
13
replies
2.7k
views
8 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 350
45
votes
23
replies
6.3k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 15 months ago by 43k • written 6.2 years ago by 104k
20
votes
8
replies
1.9k
views
9 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 3.1 years ago by 14k • written 3.1 years ago by 22k
4
votes
2
replies
1.6k
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 3.1 years ago by 142k • written 3.1 years ago by ▴ 750
1
vote
1
reply
719
views
Forum: Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 3.1 years ago by 100k • written 3.1 years ago by ▴ 420
61
votes
16
replies
8.2k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 16 months ago by ★ 1.3k • written 3.6 years ago by 8.5k
1
vote
0
replies
664
views
Forum: Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
3.1 years ago by Novogene ▴ 420
0
votes
1
reply
696
views
Forum: Apache Spark on AWS
apachespark
updated 3.2 years ago by 22k • written 3.2 years ago by ★ 1.4k
9
votes
5
replies
2.3k
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome
updated 14 months ago by 43k • written 3.2 years ago by ▴ 10
50
votes
20
replies
6.1k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 14 months ago by 43k • written 8.2 years ago by ★ 1.1k
3
votes
2
replies
1.4k
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist machine-learning
updated 14 months ago by 43k • written 3.2 years ago by • 0
3
votes
5
replies
1.2k
views
Forum: Hide Emails from Guests
meta biostars
updated 14 months ago by 43k • written 3.5 years ago by ▴ 820
0
votes
0
replies
659
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq sequencing R
updated 14 months ago by 43k • written 3.2 years ago by ▴ 60
28
votes
7
replies
2.0k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 14 months ago by 43k • written 3.2 years ago by ▴ 250
1
vote
0
replies
616
views
Forum: Determining Heteroplasmy per sample
heteroplasmy bcftools
updated 14 months ago by 43k • written 3.2 years ago by ▴ 10
4
votes
4
replies
866
views
Forum: Looking for a CS PhD Program + tips
PhD
updated 14 months ago by 43k • written 3.2 years ago by • 0
29
votes
4
replies
7.9k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 14 months ago by 43k • written 3.2 years ago by ▴ 240
6
votes
4
replies
4.7k
views
Forum: Chip-Seq Data Analysis
chip-seq
updated 15 months ago by 43k • written 12.0 years ago by ★ 1.4k
130
votes
44
replies
34k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 14 months ago by 43k • written 7.7 years ago by ★ 1.0k
2
votes
0
replies
674
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
courses
updated 14 months ago by 43k • written 3.2 years ago by ▴ 20
20
votes
4
replies
1.8k
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
papers survey SNP
updated 15 months ago by 43k • written 3.2 years ago by ★ 1.4k
1
vote
0
replies
743
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 14 months ago by 43k • written 3.2 years ago by 23k
0
votes
1
reply
735
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 14 months ago by 43k • written 3.2 years ago by ★ 1.1k
13
votes
3
replies
6.5k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd
updated 15 months ago by 43k • written 12.0 years ago by 54k
16
votes
11
replies
1.7k
views
10 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education
updated 14 months ago by 43k • written 3.3 years ago by ▴ 40
1
vote
4
replies
964
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP
updated 14 months ago by 43k • written 3.2 years ago by ▴ 20
1
vote
4
replies
1.1k
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis
updated 14 months ago by 43k • written 3.2 years ago by • 0
4
votes
6
replies
1.1k
views
Forum: What are some areas of bioinformatics that are overdone?
bioinformatics
updated 14 months ago by 43k • written 3.2 years ago by 22k
2
votes
5
replies
883
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R
updated 14 months ago by 43k • written 3.3 years ago by ★ 3.5k
6
votes
5
replies
1.7k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 14 months ago by 43k • written 3.3 years ago by ▴ 70
40
votes
24
replies
3.9k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 14 months ago by 43k • written 3.3 years ago by ▴ 100
2
votes
3
replies
2.3k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 14 months ago by 43k • written 3.7 years ago by ★ 1.5k
0
votes
0
replies
585
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq
updated 14 months ago by 43k • written 3.3 years ago by • 0
57
votes
43
replies
16k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 14 months ago by 43k • written 5.3 years ago by 11k
23
votes
7
replies
1.6k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 14 months ago by 43k • written 3.3 years ago by ▴ 60
1,000 results • Page 6 of 20
Recent Votes
Answer: Filter Genome for Specific Sites
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
The Biostar Herald for Monday, May 20, 2024
Answer: Generating Group/Cluster Lists from fastq files
The Biostar Herald for Monday, May 20, 2024
ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
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Popular Question to tothepoint ▴ 800
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Recent Replies
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by GenoMax 142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient? by Pedro • 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites by Anita • 0
Great, thank you!
Comment: Filter Genome for Specific Sites by Anita • 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by Harshita • 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by Harshita • 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl by GenoMax 142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
Comment: Filter Genome for Specific Sites by Pierre Lindenbaum 161k
> My sites are in an Excel file right now ![enter image description here][1] <!-- was an American educator and academic administrator…
Answer: Filter Genome for Specific Sites by GenoMax 142k
> I have a list of ~1,300 single bp sites Convert your file to plain text [**BED format**][1] (three fields required). Use `bedtools slo…
Comment: How to generate an Upset plot in R to plot the shared variants between cell free by sainavyav22 • 0
It worked, Thank you very much!
Comment: What marks a De-Novo Genome assembly as FAILED? by dthorbur ★ 2.0k
I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
Comment: Error in using BioSampleParser tool: subscript out of bounds by Mohamed Samir ▴ 20
Dear marco, We need to ask ourselves why it is not working for all bioprojects ? I have looked into this, and observed that as long as the…
Comment: Why most genes have high padj values by Ram 43k
You ***want*** ~3000 DE genes?<a href="" title="Text added because biostars parser needs it"></a>
Answer: Generating Group/Cluster Lists from fastq files by GenoMax 142k
> I was hoping to just do this in galaxy This is not a galaxy option but `clumpify.sh ` from BBMap suite can cluster sequences/dedupe th…
Comment: Practical Haplotype Graph v2 not finding correct paths by beantkapoor16 ▴ 10
Hello, just wanted to check in if the code has been fixed yet? Thank you.
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