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1,000 results • Page
4 of 20
Sort: Votes
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Views
Votes
Replies
9
votes
13
replies
1.6k
views
SNP's and Gene?
SNP
gene
4.5 years ago by
imgapgenomika
▴ 10
9
votes
11
replies
4.5k
views
please someone help me with running mirdeep2
software error
mirdeep2
perl
7.6 years ago by
zizigolu
★ 4.3k
9
votes
12
replies
1.5k
views
Copy number variations analysis
R
CNV
updated 4.4 years ago by
zx8754
11k • written 4.4 years ago by
rprog008
▴ 70
9
votes
11
replies
1.5k
views
6 follow
Split up excel cell into multiple records
excel
byonic
6.8 years ago by
rshipman
▴ 30
9
votes
16
replies
3.8k
views
6 follow
covert SAM to full length fasta
fasta
SAM
updated 13 months ago by
Ram
43k • written 5.7 years ago by
marongiu.luigi
▴ 710
9
votes
6
replies
1.3k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
9
votes
7
replies
1.1k
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 23 months ago by
Ram
43k • written 2.0 years ago by
2138493o
▴ 20
9
votes
4
replies
5.6k
views
How to analyse normalized read count?
RNA-Seq
R
updated 16 months ago by
Ram
43k • written 8.9 years ago by
pbio
▴ 150
9
votes
13
replies
2.5k
views
Reannotating a gene: Identifying translation and transcription start sites
RNA-Seq
genome
gene
7.3 years ago by
rh5118
▴ 40
9
votes
7
replies
1.9k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.9 years ago by
BioinfGuru
★ 1.7k
9
votes
13
replies
2.9k
views
qRT-PCR data analysis steps and workflow
qRT-PCR
Reference genes
Normalization
DeltaCt
FC
5.2 years ago by
mohammedtoufiq91
▴ 250
9
votes
1
reply
6.1k
views
Why does MACS2 report multiple records for the same peak region?
ChIP-Seq
macs
macs2
updated 20 months ago by
Ram
43k • written 8.5 years ago by
James Ashmore
★ 3.4k
9
votes
10
replies
2.5k
views
why there is 0/0 genotyp in VCF file?
VCF
GATK
Variant
4.7 years ago by
star
▴ 350
9
votes
7
replies
5.6k
views
fisher test with multiple samples
statistics
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
juncheng
▴ 220
9
votes
10
replies
3.5k
views
generation of heat map by excel data.
R
excel
heatmap
updated 5.9 years ago by
Ram
43k • written 5.9 years ago by
abhilashreddy495
▴ 10
9
votes
5
replies
5.3k
views
Binning of reads vs. binning of contigs in metagenomics
Binning
Metagenomics
5.4 years ago by
vijinim
▴ 100
9
votes
2
replies
590
views
Answer needed urgently
Deep
updated 19 months ago by
Mensur Dlakic
★ 27k • written 19 months ago by
Deepak
• 0
9
votes
4
replies
1.3k
views
Is there any method to run tophat ?
RNA-Seq
updated 5.7 years ago by
Biostar
20 • written 5.8 years ago by
Chan
• 0
9
votes
5
replies
500
views
Annotation of Complex Heatmap
complexheatmap
3 months ago by
abiuma
▴ 30
9
votes
13
replies
15k
views
Sort bam file by coordinates using samtools
next-gen-sequencing
gene
rna-seq
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Shahzad
▴ 30
9
votes
7
replies
3.8k
views
7 follow
Are 2 replicates per sample sufficient for RNA-seq data analysis?
RNA-Seq
R
Ngs
6.2 years ago by
Arindam Ghosh
▴ 510
9
votes
7
replies
1.3k
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 16 months ago by
barslmn
★ 2.1k • written 16 months ago by
Batel
• 0
9
votes
9
replies
4.7k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq
TSS
V-plot
4.4 years ago by
nanoide
▴ 120
9
votes
12
replies
7.3k
views
How to align reads on reference using python?
genome
sequence
gene
sequencing
updated 5.4 years ago by
WouterDeCoster
47k • written 5.4 years ago by
doramora
▴ 10
9
votes
7
replies
2.4k
views
Merging BWT indices for BWA
BWA
BWT
read aligner
merge
5.5 years ago by
rgc255
▴ 60
8
votes
8
replies
1.5k
views
microRNA-seq sequence lenght distribution after trimming
alignment
rna-seq
5.3 years ago by
szabo.marton
▴ 10
8
votes
14
replies
2.5k
views
6 follow
kallisto pseudoalignment rate is lower than literature
pseudoalignment
kallisto
RNA-seq
2.8 years ago by
johnsonqinz
• 0
8
votes
4
replies
2.3k
views
Implementing a naive javascript-based de Bruijn graph
debruijn
graph
javascript
algorithm
7.9 years ago by
Pierre Lindenbaum
161k
8
votes
11
replies
2.0k
views
using STAR instead of HISAT2
STAR
updated 21 months ago by
Ram
43k • written 21 months ago by
Chris
▴ 260
8
votes
3
replies
845
views
How safe the UCSC is for patients data
RNA-Seq
updated 4.7 years ago by
ATpoint
82k • written 4.7 years ago by
Sara
▴ 240
8
votes
20
replies
2.5k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 23 months ago by
Ram
43k • written 5.8 years ago by
Bara'a
▴ 270
8
votes
4
replies
3.2k
views
How to use machine learning in Fastq/Fasta data?
machine learning
fasta
fastq
sequencing
6.9 years ago by
inkprs
▴ 70
8
votes
1
reply
1.6k
views
Genome Sequencing And Evolutionary History
evolution
updated 10.3 years ago by
Neilfws
49k • written 10.3 years ago by
robjohn7000
▴ 110
8
votes
10
replies
2.1k
views
PyWGCNA
WGCNA
10 months ago by
yoshifumimiya
▴ 40
8
votes
9
replies
1.5k
views
superimpose
discovery
ds
visualizer
2.9 years ago by
Alex
▴ 20
8
votes
4
replies
864
views
Correlation network analysis
rna-seq
3.4 years ago by
Lepomis_8
▴ 30
8
votes
7
replies
3.9k
views
6 follow
Compatibility between my reference genome and GTF file
rna-seq
hisat2
alignment
reference genome
5.6 years ago by
Batu
▴ 250
8
votes
5
replies
14k
views
The comparison between HISAT2 and Tophat2
RNA-Seq
Tophat2
HISAT2
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Peng Huang
▴ 50
8
votes
1
reply
1.2k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors
gatk
trio
ped
3.3 years ago by
DareDevil
★ 4.3k
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by
Dunois
★ 2.5k • written 2.9 years ago by
joe_genome
▴ 40
8
votes
8
replies
1.6k
views
Clustering DNA sequences (from human genome)
sequencing
genome
4.6 years ago by
abdul.karim
• 0
8
votes
25
replies
3.0k
views
construction of a database
sql
noSQL
neo4j
database
updated 13 months ago by
Ram
43k • written 3.0 years ago by
Debut
▴ 20
8
votes
11
replies
1.9k
views
Sending files to Galaxy
Galaxy
fastq
7.6 years ago by
statfa
▴ 760
8
votes
8
replies
2.8k
views
Making chain files
Assembly
genome
alignment
sequence
updated 4.8 years ago by
Biostar
20 • written 4.8 years ago by
mc2548
▴ 50
8
votes
8
replies
1.9k
views
Sequence alignment algorithm for big size genes in MATLAB
alignment
Matlab
next-gen
6.9 years ago by
r.tor
▴ 50
8
votes
14
replies
6.0k
views
Error in BWA-MEM running in linux
RNA-Seq
BWA-MEM
alignment
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
modarzi
▴ 170
8
votes
4
replies
2.4k
views
Global Sequence Alignment
alignment
11.0 years ago by
behrang
• 0
8
votes
6
replies
933
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari
structural-variants
r
vcf
venn-diagram
5 months ago by
Matteo Ungaro
▴ 100
8
votes
5
replies
1.0k
views
Why could we infer a physical time scale (e.g. a billion year) from a phylogenetic analysis?
phylogeny
phylogenetic tree
4.5 years ago by
johnnytam100
▴ 110
8
votes
11
replies
4.9k
views
Increasing kmer limit in SPAdes
Assembly
Bacterial
Spades
Velvet
7.8 years ago by
rrcutler
▴ 120
1,000 results • Page
4 of 20
Recent Votes
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by
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142k
See answer here: https://www.biostars.org/p/9494503/#9494619 Heng Li said: https://twitter.com/lh3lh3/status/1410375781340135424 <!-- th…
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Ok fixed!
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This topic is almost 5 years old, but I am facing the same (or at least a very similar) issue. I have ngs files from a CRISPR screen that …
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by
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i tried it. it splits, however, when i compare the first 8 lines of the second split file with the according lines from the original file, …
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43k
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Hi Nicole. 1. The clustering will be quite different between pling and the rep types (because plasmids with one rep type can still be ve…
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43k
Do not delete posts that have received feedback. Engage with the user providing you feedback.
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Please kindly check your result here. You can click `csv` and download the date in this [link][1]. **OR** If you prefer to use R, there i…
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Sure, you can run it on them. Stitching tends to happen less frequently since the ATAC peaks are generally less wide than H3K27ac, but it'l…
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