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412 results • Page
3 of 9
Sort: replies
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Votes
Replies
2
votes
6
replies
3.2k
views
Tutorial:
Rembrandt Glioma Data Analysis (PART I) - Are Gender specific genes related to cancer ?
gene
R
Rembrandt
updated 13 months ago by
Ram
43k • written 7.9 years ago by
majuang66
▴ 140
43
votes
6
replies
12k
views
Tutorial:
Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
ensembl
maf
tcga
vcf
updated 14 months ago by
Ram
43k • written 10.3 years ago by
Cyriac Kandoth
6.1k
46
votes
6
replies
25k
views
Tutorial:
Greatly speed up conda by using mamba
software
updated 2.3 years ago by
cameron.cowan
▴ 50 • written 3.2 years ago by
rpolicastro
13k
67
votes
6
replies
26k
views
7 follow
Tutorial:
Rna-Seq Review Papers
RNA-seq
papers
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
16
votes
6
replies
6.5k
views
Tutorial:
How to make your snakefiles self-documenting
snakemake
updated 13 months ago by
Ram
43k • written 7.5 years ago by
Botond Sipos
★ 1.7k
13
votes
6
replies
6.0k
views
Tutorial:
Trim & align paired-end reads in a single pass
align
trim
fastq
pipe
paired-end
updated 13 months ago by
Ram
43k • written 7.9 years ago by
dariober
14k
61
votes
6
replies
9.5k
views
Tutorial:
Minimum Standards For Bioinformatics Command Line Tools
command-line
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Medhat
9.7k
20
votes
6
replies
5.7k
views
Tutorial:
Open Targets and programmatic access
open-targets
disease
API
drug
updated 14 months ago by
Ram
43k • written 7.7 years ago by
Denise CS
★ 5.2k
10
votes
5
replies
24k
views
Tutorial:
Y-DNA and mtDNA Haplogroup Predictor
haplogroup
updated 14 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
16
votes
5
replies
9.0k
views
Tutorial:
Using The Biomart Perl Api For Simple Queries
api
perl
biomart
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Obi Griffith
20k
12
votes
5
replies
8.4k
views
Tutorial:
How To Install BioPerl Without Root Privileges in Ubuntu/Linxu
bioperl
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Shicheng Guo
★ 9.4k
29
votes
5
replies
6.4k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 14 months ago by
Ram
43k • written 10.7 years ago by
ole.tange
★ 4.4k
64
votes
5
replies
7.3k
views
10 follow
Tutorial:
Informatics of RNA-Seq.
next-gen
RNA-Seq
updated 19 months ago by
Ram
43k • written 8.8 years ago by
GouthamAtla
12k
2
votes
5
replies
2.2k
views
Tutorial:
Building OMA database on SGE
oma
updated 13 months ago by
Ram
43k • written 7.9 years ago by
javier.herrero
▴ 10
1
vote
5
replies
683
views
Tutorial:
Single-cell RNA-seq: Annotation: Celltype annotation migration(mapping) with TOSICA
scRNA-seq
TOSICA
updated 4 months ago by
Ram
43k • written 4 months ago by
Julia Ma
▴ 120
12
votes
5
replies
2.5k
views
Tutorial:
FASTA file split
fasta
updated 14 months ago by
Ram
43k • written 3.9 years ago by
Juke34
8.6k
5
votes
5
replies
681
views
Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
updated 17 days ago by
Mbofire
• 0 • written 26 days ago by
Ming Tommy Tang
★ 3.9k
70
votes
5
replies
11k
views
8 follow
Tutorial:
Bioinformatics For Metagenomic Analyses
QC
taxonomy
metagenomics
updated 2.1 years ago by
Ram
43k • written 10.1 years ago by
umer.zeeshan.ijaz
★ 1.8k
15
votes
5
replies
16k
views
Tutorial:
How to create a mutation lolliplot with GenVisR
bioconductor
graphics
R
genvisr
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Obi Griffith
20k
6
votes
5
replies
7.0k
views
Tutorial:
use firehose_get to download TCGA data
tcga
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.5 years ago by
jmzeng1314
▴ 140
16
votes
5
replies
13k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
enrichr
RNA-Seq
gene
R
updated 14 months ago by
Ram
43k • written 6.5 years ago by
ahmad mousavi
▴ 800
37
votes
5
replies
6.1k
views
Tutorial:
[Beginner] Introduction to bioinformatics file types
fastq
fasta
bed
SAM
updated 8 months ago by
gallardodiazmiriam
▴ 20 • written 8.8 years ago by
Luke Crichton
▴ 430
54
votes
5
replies
15k
views
6 follow
Tutorial:
Machine Learning For Cancer Classification - Part 4 - Plotting A Kaplan-Meier Curve For Survival Analysis
r
updated 20 months ago by
Ram
43k • written 10.5 years ago by
Nicholas Spies
★ 1.2k
21
votes
5
replies
6.8k
views
Tutorial:
Analysis of single-cell RNA-seq data
single-cell
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Geparada
★ 1.5k
9
votes
5
replies
2.3k
views
Tutorial:
What is new in samtools release 1.5 [Solstice Release] (21st June 2017)
samtools
updated 12 months ago by
Ram
43k • written 6.9 years ago by
Istvan Albert
100k
12
votes
4
replies
5.4k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 15 months ago by
Ram
43k • written 3.3 years ago by
garden_giessen
▴ 130
29
votes
4
replies
4.5k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 14 months ago by
Ram
43k • written 5.3 years ago by
Jean-Karim Heriche
27k
6
votes
4
replies
7.5k
views
Tutorial:
Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
visualization
ChIP-seq
RNA-seq
ucsc-genome-browser
bigwig
updated 15 months ago by
Ram
43k • written 11.2 years ago by
Sukhi Singh
11k
0
votes
4
replies
781
views
Tutorial:
Reverse pharmacology: how to predict drugs with genes or disease names?
drugs
drug-targets
genes
6 months ago by
Coremine Medical
▴ 20
3
votes
4
replies
4.5k
views
Tutorial:
gencore: a tool to reduce sequencing noises by generating consensus reads
consensus
OpenGene
sequencing-noise
updated 12 months ago by
Ram
43k • written 6.1 years ago by
chen
★ 2.5k
20
votes
4
replies
14k
views
Tutorial:
How To Install A Specific Cdf Package For Use In Bioconductor
bioconductor
affymetrix
updated 15 months ago by
Ram
43k • written 11.2 years ago by
Obi Griffith
20k
12
votes
4
replies
2.2k
views
Tutorial:
Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR
DESeq2
updated 14 months ago by
Ram
43k • written 6.7 years ago by
KVC_bioinfo
▴ 590
19
votes
4
replies
8.9k
views
Tutorial:
Rna Seq Experimental Design For Measuring Differential Gene Expression
RNA-seq
updated 15 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
1
vote
4
replies
3.5k
views
Tutorial:
How to install C++ compilers/make from GNU for Gromacs?
Gromacs
Cpp-compilers
GNU
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Hassan Rasouli
▴ 10
20
votes
4
replies
8.6k
views
Tutorial:
DE analysis by edgeR
RNA-Seq
R
edgeR
updated 13 months ago by
Ram
43k • written 7.7 years ago by
zizigolu
★ 4.3k
10
votes
4
replies
11k
views
Tutorial:
Using the MinION MinKNOW software on Ubuntu 1604
long-reads
oxford-nanopore
minion
updated 14 months ago by
Ram
43k • written 4.9 years ago by
colindaven
6.4k
3
votes
4
replies
3.6k
views
Tutorial:
Gene Set Enrichment Analysis on T-BioInfo
gene
RNA-Seq
updated 12 months ago by
Ram
43k • written 5.6 years ago by
elia.brodsky
▴ 340
24
votes
4
replies
7.7k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 14 months ago by
Ram
43k • written 4.8 years ago by
ATpoint
82k
10
votes
4
replies
5.7k
views
Tutorial:
Unsupervised clustering on gene expression data
gene-expression
clustering
RNA-seq
9 months ago by
Hamid Ghaedi
3.2k
15
votes
4
replies
4.6k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 14 months ago by
Ram
43k • written 3.8 years ago by
Thind amarinder
▴ 340
1
vote
4
replies
3.4k
views
Tutorial:
Applying machine learning to NGS transcriptomic data
next-gen
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.0 years ago by
elia.brodsky
▴ 340
32
votes
4
replies
8.0k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 14 months ago by
Ram
43k • written 5.5 years ago by
firestar
★ 1.6k
20
votes
4
replies
2.7k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 14 months ago by
Ram
43k • written 5.0 years ago by
nim.1111.ou
▴ 180
2
votes
3
replies
2.0k
views
Tutorial:
Help demonstrate reproducibility in bioinformatics with the GA4GH's tool execution Challenge
GA4GH
Docker
CWL
Rabix
updated 13 months ago by
Ram
43k • written 7.2 years ago by
adrian.sharma
▴ 20
9
votes
3
replies
4.2k
views
Tutorial:
Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 15 months ago by
Ram
43k • written 11.8 years ago by
Istvan Albert
100k
8
votes
3
replies
2.8k
views
Tutorial:
Free online interactive Ensembl training
ensembl
training
genome
updated 22 months ago by
Ram
43k • written 8.3 years ago by
Emily
23k
19
votes
3
replies
14k
views
Tutorial:
bedGraphToBigWig Tutorial and Report
bedGraphToBigWig
updated 22 months ago by
Ram
43k • written 8.3 years ago by
Shicheng Guo
★ 9.4k
3
votes
3
replies
8.8k
views
Tutorial:
High Speed Downloading of SRA, SAM and Fastq Files
fastq
sam
Aspera-Connect
sra
updated 12 months ago by
Ram
43k • written 6.4 years ago by
Wenhu_Cao
▴ 100
3
votes
3
replies
1.2k
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
updated 4 months ago by
sil_bioinfo
▴ 40 • written 9 months ago by
Ming Tommy Tang
★ 3.9k
75
votes
3
replies
39k
views
Tutorial:
Revisiting the FastQC read duplication report
fastqc
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
Istvan Albert
100k
412 results • Page
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Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi again Alex, sorry to ask another question about this, but how can I tweak this code to keep **all** of the SNPs that pass the threshold …
Comment: how to treat the replicates while performing WGCNA
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▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
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Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
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The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
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Please do a few simple Google searches before asking others for help.
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This post does not fit the theme of this forum.
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Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
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Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
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Anita
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This is unhelpful and doesn't answer my question.
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by
Harshita
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It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
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