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378 results • Page 3 of 8
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7
votes
8
replies
2.0k
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Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
16
votes
8
replies
2.1k
views
8 follow
Forum: What are the most important unresolved problems in Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 7.6 years ago by ★ 2.5k
9
votes
8
replies
5.2k
views
Forum: R or python, which one do you prefer in analysing scRNAseq datasets?
R RNA-Seq python
updated 12 months ago by 43k • written 6.0 years ago by • 0
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 11 months ago by 43k • written 4.6 years ago by ▴ 300
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
2
votes
8
replies
1.5k
views
Forum: Learning community for newbies
python
updated 12 months ago by 43k • written 6.1 years ago by • 0
11
votes
8
replies
1.4k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 8 months ago by 43k • written 9 months ago by ▴ 10
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.5 years ago by 8.2k
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 11 months ago by 43k • written 4.6 years ago by ▴ 20
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.1 years ago by ▴ 50
26
votes
8
replies
1.7k
views
7 follow
Forum: Reasons to refuse to give support
design rna-seq statistics
updated 11 months ago by 43k • written 5.5 years ago by 8.3k
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 30
7
votes
7
replies
1.9k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 4 weeks ago by ★ 2.5k • written 4 weeks ago by • 0
19
votes
7
replies
1.2k
views
9 follow
Forum: DNA in pixels
genome alignment sequencing
updated 11 months ago by 43k • written 3.5 years ago by ▴ 30
2
votes
7
replies
1.2k
views
Forum: Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS CRISPR-Cas9
updated 11 months ago by 43k • written 4.6 years ago by ▴ 170
10
votes
7
replies
2.3k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 24 months ago by ▴ 20
18
votes
7
replies
4.5k
views
Forum: Review of the CIGAR string format
alignment
updated 11 months ago by 43k • written 5.6 years ago by 8.6k
2
votes
7
replies
1.5k
views
Forum: Theory v Reality
protein DNA polymorphism variation
updated 12 months ago by 43k • written 6.1 years ago by • 0
8
votes
7
replies
872
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 12 weeks ago by ▴ 120 • written 3 months ago by • 0
4
votes
7
replies
1.5k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.4k
7
votes
7
replies
5.0k
views
Forum: Filtering out chromosomes from reference genome
RNA-Seq Alignment
updated 12 months ago by 43k • written 6.0 years ago by 5.3k
11
votes
7
replies
6.7k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
12
votes
7
replies
7.2k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 7 weeks ago by ★ 6.0k • written 2.7 years ago by ▴ 70
13
votes
7
replies
1.3k
views
Forum: Feedback for my python package to combine results from multiple classifiers
annotation protein python machine-learning
updated 11 months ago by 43k • written 3.7 years ago by ▴ 110
3
votes
7
replies
2.9k
views
Forum: Strategies for group submisions to SRA (BioProject)
NCBI SRA next-gen Archive Core-Facility
updated 12 months ago by 43k • written 5.6 years ago by ★ 2.7k
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
3
votes
7
replies
1.0k
views
Forum: Construct a small computing server for GWAS Analysis
assembly
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 12 months ago by 43k • written 3.4 years ago by 8.7k
16
votes
7
replies
1.3k
views
Forum: What counts as "complex code"?
career
updated 11 months ago by 43k • written 5.7 years ago by ▴ 30
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
1
vote
7
replies
1.6k
views
Forum: Best online certificates / masters for Bioinformatics
learning certification courses online-training
updated 11 months ago by 43k • written 4.0 years ago by • 0
2
votes
7
replies
1.5k
views
Forum: Structural Bioinformatics - how popular
structural-bioinformatics
updated 11 months ago by 43k • written 5.7 years ago by • 0
21
votes
7
replies
12k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 months ago by ▴ 100 • written 8.1 years ago by 11k
1
vote
6
replies
1.4k
views
Forum: Genetic variation data analysis frequently tricky problems and troubleshot
vcf SNP plink
updated 12 months ago by 43k • written 6.1 years ago by ★ 9.4k
9
votes
6
replies
1.4k
views
Forum: New Aligner Tool - Would you be interested in this ?
ChIP-Seq alignment Assembly next-gen rna-seq
updated 12 months ago by 43k • written 6.1 years ago by ▴ 30
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
8
votes
6
replies
2.5k
views
Forum: How do you organize sequence data (FASTQs)?
RNA-Seq sequencing
updated 12 months ago by 43k • written 6.1 years ago by ▴ 280
4
votes
6
replies
974
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
11
votes
6
replies
1.6k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 11 months ago by 43k • written 5.6 years ago by ▴ 760
0
votes
6
replies
2.1k
views
7 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers
software-error
updated 11 months ago by 43k • written 5.7 years ago by • 0
2
votes
6
replies
1.0k
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 43k • written 4.4 years ago by ▴ 60
6
votes
6
replies
811
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
10 weeks ago by jared.andrews07 ★ 16k
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
7
votes
6
replies
773
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 4 months ago by 43k • written 4 months ago by ▴ 20
7
votes
6
replies
3.1k
views
Forum: transition to bioinformatics
career wet-lab
updated 12 months ago by 43k • written 5.9 years ago by • 0
15
votes
6
replies
4.3k
views
Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
database mysql mongodb software
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
19
votes
6
replies
3.5k
views
Forum: ngs vs microarray
microarray ngs
updated 11 months ago by 43k • written 5.8 years ago by ▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
13
votes
6
replies
1.3k
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by 11k
378 results • Page 3 of 8
Recent Votes
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
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Scholar to dsull ★ 6.0k
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Recent Replies
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: how to treat the replicates while performing WGCNA by andres.firrincieli 3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated by alanh ▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data? by Zhenyu Zhang ★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
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