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1,000 results • Page
2 of 20
Sort: Votes
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Views
Votes
Replies
12
votes
14
replies
5.4k
views
bedtools intersect error?
ChIP-Seq
bedtools
intersect
4.8 years ago by
star
▴ 350
12
votes
10
replies
4.0k
views
Speed up BLASTp vs NCBI nr database
blast
7.5 years ago by
biotech
▴ 570
12
votes
8
replies
1.0k
views
Align 16S sequence to a reference
16S
sequence
alignment
updated 15 months ago by
Matthias Zepper
4.2k • written 15 months ago by
A_heath
▴ 160
12
votes
21
replies
2.9k
views
Calculate disease risk based on the genoytype of some SNPs?
SNP
prs
gwas
PRSice
Plink
updated 4.4 years ago by
Biostar
20 • written 4.4 years ago by
Miguel
▴ 30
12
votes
17
replies
4.5k
views
How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
Python
Newick
phylogenetics
tree
phylogeny
6.2 years ago by
anonymous1192976466
▴ 50
12
votes
10
replies
2.7k
views
7 follow
SAM / BAM alignments
SAM
BAM
6.9 years ago by
John
13k
12
votes
12
replies
4.8k
views
Need A Script That Finds Whether A String In One Column Matches In Other Columns Of The Same Row
perl
updated 10.0 years ago by
Istvan Albert
99k • written 10.0 years ago by
biolab
★ 1.4k
11
votes
22
replies
3.7k
views
No significant DEG: A request to double check my commands for limma.
limma
differential gene expression
covariates
4.6 years ago by
RNAseqer
▴ 250
11
votes
10
replies
10k
views
Extracting from tophat outputs reads pairs and splice-junctions with a single best match
TOPHAT
RNA-Seq
updated 23 months ago by
Ram
41k • written 9.3 years ago by
trakhtenberg
▴ 160
11
votes
12
replies
1.2k
views
Need help changing RNA-seq code from histat aligner into Star aligner please.
RNA-Seq
3.5 years ago by
screadore
▴ 20
11
votes
2
replies
1.4k
views
Concept behind p-value correction?
RNA-Seq
protemics
genome
R
4.3 years ago by
WUSCHEL
▴ 740
11
votes
11
replies
876
views
6 follow
Doubt regarding dna sequence length
genome
sequencing
sequence
3.6 years ago by
lokeshp14cs24
• 0
11
votes
6
replies
6.1k
views
Merging raw Illumina FASTQ files with snakemake
snakemake
illumina
paired-end reads
6.4 years ago by
Jokhe
▴ 140
11
votes
10
replies
2.6k
views
6 follow
Genomic statistics from gtf
gene
gtf
5.5 years ago by
plebaninora
• 0
11
votes
9
replies
2.4k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 11 months ago by
Ram
41k • written 8.5 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
11
votes
15
replies
2.6k
views
How do I get the read counts for a specific exon
bam
exon
updated 5.7 years ago by
Ram
41k • written 5.7 years ago by
b10hazard
▴ 30
11
votes
7
replies
3.2k
views
Estimating Mean Inner Distance
tuxedo
tophat
RNA-Seq
7.1 years ago by
CF
▴ 50
11
votes
10
replies
1.5k
views
Most fishes lay eggs, some are live-bearing, How to find related genes to these different charachteristics?
gene
reproduction
evolution
alignment
updated 7.2 years ago by
Biostar
20 • written 7.2 years ago by
Farbod
★ 3.4k
11
votes
11
replies
2.6k
views
Error of Groups in R
affy
limma
oligo
bioconductor
R
updated 7.6 years ago by
Biostar
20 • written 7.6 years ago by
12021560-040
▴ 70
11
votes
10
replies
5.5k
views
Best mapping software to generate BAM file
BAM
mapping
updated 6.0 years ago by
Biostar
20 • written 6.2 years ago by
Anand Rao
▴ 620
11
votes
11
replies
5.3k
views
6 follow
How to get work experience in Bioinformatics
work experience
python
genome
sequence
5.8 years ago by
ishackm
▴ 110
11
votes
29
replies
9.1k
views
SummarizedExperiment nrow differs from ncol
DESeq2
SummarizedExperiment
updated 2.2 years ago by
Ram
41k • written 9.5 years ago by
Parham
★ 1.6k
11
votes
24
replies
5.0k
views
BWA mem skip orientation
assembly
genome
alignment
next-gen
4.6 years ago by
williamsbrian5064
▴ 500
11
votes
6
replies
3.7k
views
bcftools isec -n operators
bcftools
intersect
updated 2.3 years ago by
Ram
41k • written 3.9 years ago by
Begonia_pavonina
▴ 120
11
votes
4
replies
2.5k
views
10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
bwa
fastq
alignment
compression
updated 7.5 years ago by
Biostar
20 • written 7.6 years ago by
William
★ 5.2k
11
votes
5
replies
1.1k
views
Differential expression analysis - issue with replicating results
rnaseq
DESeq2
R
bioconductor
updated 2.0 years ago by
ATpoint
78k • written 2.0 years ago by
suzanne rein
▴ 10
10
votes
8
replies
5.9k
views
Software To Calculate Power Of Exome Sequencing?
exome
statistics
updated 12.3 years ago by
Neilfws
49k • written 12.3 years ago by
Liyf
▴ 300
10
votes
19
replies
3.0k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.6 years ago by
GenoMax
136k • written 2.6 years ago by
matt
▴ 20
10
votes
6
replies
2.6k
views
Understanding Supplementary reads.
Bowtie2
MEM
BWA
Dragen
updated 22 months ago by
Istvan Albert
99k • written 22 months ago by
kiran
• 0
10
votes
7
replies
1.1k
views
Can two mates have different file size?
sequencing
fastq
5.3 years ago by
marongiu.luigi
▴ 690
10
votes
7
replies
1.1k
views
Better DE analytic tools
RNA-Seq
DE tools
Bayesian empirical approach
5.6 years ago by
mhyunjunkang
▴ 110
10
votes
4
replies
1.2k
views
How to pipe samtools mileup with varscan trio caller?
varscan
samtools
pipe
2.9 years ago by
DareDevil
★ 3.3k
10
votes
11
replies
8.8k
views
How to adjust my manhattan plot to look better?
qqman
manhattan
R
updated 18 months ago by
Ram
41k • written 8.7 years ago by
SheelS
▴ 40
10
votes
10
replies
1.8k
views
Minor allele frequency
GWAS
SNPs
Alleles
updated 5.1 years ago by
Biostar
20 • written 7.0 years ago by
alessandrotestori7
▴ 420
10
votes
7
replies
3.5k
views
What is Pathway Analysis?
database
analysis
ontology
pathway
updated 5 months ago by
Ram
41k • written 7.7 years ago by
Pranavathiyani G
▴ 330
10
votes
15
replies
1.5k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
5 months ago by
Chris
▴ 230
10
votes
2
replies
500
views
any script that can do this task
shell-script
updated 20 months ago by
Ram
41k • written 20 months ago by
Confused_human
▴ 20
10
votes
15
replies
5.8k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 8 months ago by
Ram
41k • written 5.2 years ago by
marongiu.luigi
▴ 690
10
votes
11
replies
1.5k
views
How to identify dysregulated pathways using Support Vector machine (SVM)?
SVM
5.0 years ago by
Chaimaa
▴ 260
10
votes
6
replies
804
views
RNA seq, secreted protein
protein
gene
secreted
updated 4 months ago by
Joe
21k • written 12 months ago by
Rob
▴ 160
10
votes
15
replies
5.9k
views
DIAMOND blast imported into MEGAN6 has no taxonomic assignment
blast
MEGAN6
Taxonomy
DIAMOND
7.0 years ago by
Farbod
★ 3.4k
10
votes
9
replies
1.8k
views
How to improve fastq quality based on fastqc output ?
RNA-Seq
5.6 years ago by
Angelique
▴ 10
10
votes
11
replies
4.5k
views
Trouble Installing Genometools-1.5.1 On My Mac Ox
genome
protein-structure
9.8 years ago by
inadamj
▴ 60
10
votes
1
reply
3.9k
views
Assessing The Quality Of Mirna Rnaseq Data
mirna
updated 10.1 years ago by
Biostar
20 • written 10.8 years ago by
Ashutosh Pandey
12k
10
votes
2
replies
2.7k
views
Standalone Blast Issue
blast
11.5 years ago by
chlazaris
• 0
10
votes
13
replies
5.5k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
6.8 years ago by
Vasu
▴ 740
10
votes
3
replies
1.3k
views
how to create new file
r
updated 7.1 years ago by
GenoMax
136k • written 7.1 years ago by
forever
▴ 80
10
votes
10
replies
3.6k
views
Parameter optimization STAR
RNA-Seq
5.8 years ago by
XBria
▴ 90
10
votes
1
reply
3.4k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq
qc
updated 16 months ago by
Ram
41k • written 8.5 years ago by
Niek De Klein
★ 2.6k
10
votes
12
replies
1.8k
views
The 2013 Eisenberg and Levanon housekeeping genes list for Human is the most updated one?
genes
human
housekeeping
list
4.8 years ago by
msimmer92
▴ 300
1,000 results • Page
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Comment: Renaming fasta files with their headers
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It's hard to understand what your input and desired output look like. Please edit your original question so it includes a clear explanation…
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Can be 23 or 109, it does not matter.
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Thank you for your code, but i have a fasta file which contains [gene=rps12] ids, so i want to rename the header with gene id alone like >r…
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Assuming that you have a directory containing multiple files with `.fasta` extension, each containing one record, you can do something like…
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thank you, @wuschel, for the comprehensive reply.
Comment: Renaming fasta files with their headers
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i tried this command awk -F 'gene=|]|[.]{1}' '/^>/ {print $2}' 7seqNC_018552.1cds.fasta > 7NC_018552.fasta got only gene name alone wit…
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simply add a word to line 1 as the name of column 6
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Hi there, will it be an issue if we do not mention 60?
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Yes there are many answer in this forum but they are specific to header line. it doesnot work with my header line and its difficult for me …
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There are various methods to correlate and study metabolomics data to proteomics data. These methods can be broadly categorized into: 1. C…
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This type of question is among the most frequently asked on this forum. Searching through previous posts should give you several different …
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ok, but, suppose they are different. WHY are they different. if they are different, will you proceed from that knowledge directly to some …
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