Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
5 of 20
Sort: Votes
Rank
Views
Votes
Replies
8
votes
7
replies
1.6k
views
Splitting the overall RNA-seq data
RNA-Seq
6.9 years ago by
aeserrano
▴ 40
8
votes
20
replies
3.0k
views
Why does cufflinks split this transcript?
RNA-Seq
cufflinks
assembly
6.4 years ago by
corend
▴ 70
8
votes
6
replies
1.3k
views
How to apply bioinformatic in vaccine design?
Vaccine
updated 18 months ago by
Dunois
★ 2.5k • written 18 months ago by
Jean
▴ 50
8
votes
11
replies
5.8k
views
RNASeq gender identification
RNA-Seq
6.7 years ago by
popayekid55
▴ 110
8
votes
9
replies
1.5k
views
6 follow
Featurecount is 0 while TPM is 6289.54
TPM
Count
Feature
2.4 years ago by
zhangmeng21
▴ 10
8
votes
20
replies
2.5k
views
Converting runpsipred Script to Work on Windows OS
psipred
windows
updated 24 months ago by
Ram
43k • written 5.8 years ago by
Bara'a
▴ 270
8
votes
8
replies
1.9k
views
Sequence alignment algorithm for big size genes in MATLAB
alignment
Matlab
next-gen
7.0 years ago by
r.tor
▴ 50
8
votes
8
replies
1.6k
views
Clustering DNA sequences (from human genome)
sequencing
genome
4.7 years ago by
abdul.karim
• 0
8
votes
7
replies
598
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 3 months ago by
Ram
43k • written 3 months ago by
synat.keam
▴ 100
8
votes
4
replies
2.4k
views
Global Sequence Alignment
alignment
11.0 years ago by
behrang
• 0
8
votes
11
replies
5.0k
views
Increasing kmer limit in SPAdes
Assembly
Bacterial
Spades
Velvet
7.8 years ago by
rrcutler
▴ 120
8
votes
11
replies
3.6k
views
Semantic Similarity selection in REVIGO: which is better? many clusters or few?
go
revigo
gene ontology
6.5 years ago by
Farbod
★ 3.4k
8
votes
12
replies
4.3k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 14 months ago by
Ram
43k • written 2.8 years ago by
daver.v
▴ 30
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.6 years ago by
guillaume.rbt
★ 1.0k
8
votes
6
replies
1.2k
views
I have 2 identical jupyter notebooks and I get BiomartException when I run one but not the other.
biomart
python
updated 4.3 years ago by
Biostar
20 • written 4.3 years ago by
Maria K
▴ 50
8
votes
7
replies
1.1k
views
Why does Ensembl VEP provide HGVSg for some variants and not others?
vcf
VEP
11 months ago by
Jeremy Leipzig
22k
8
votes
20
replies
2.7k
views
Getting read depth for normal and tumour
R
WGS
vcf
5.1 years ago by
zizigolu
★ 4.3k
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by
Dunois
★ 2.5k • written 2.9 years ago by
joe_genome
▴ 40
8
votes
25
replies
3.1k
views
construction of a database
sql
noSQL
neo4j
database
updated 14 months ago by
Ram
43k • written 3.0 years ago by
Debut
▴ 20
8
votes
7
replies
4.3k
views
ORF finder script
orf
open reading frame
bash
shell
sequencing
7.4 years ago by
ahm3dhany
▴ 20
8
votes
11
replies
1.9k
views
Sending files to Galaxy
Galaxy
fastq
7.6 years ago by
statfa
▴ 760
8
votes
14
replies
2.5k
views
6 follow
kallisto pseudoalignment rate is lower than literature
pseudoalignment
kallisto
RNA-seq
2.9 years ago by
johnsonqinz
• 0
8
votes
5
replies
14k
views
The comparison between HISAT2 and Tophat2
RNA-Seq
Tophat2
HISAT2
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Peng Huang
▴ 50
8
votes
5
replies
3.2k
views
7 follow
What is the best way to merge multiple fasta files containing contigs?
Assembly
Anvi’o
fasta
updated 5.3 years ago by
zx8754
11k • written 5.3 years ago by
anastasia.gs17
• 0
8
votes
12
replies
3.5k
views
fastq file format error
fastq
illumina
updated 5.0 years ago by
Pierre Lindenbaum
161k • written 5.0 years ago by
hafiz.talhamalik
▴ 350
8
votes
7
replies
6.9k
views
I got low overall alignment rate running HiSAT2
RNA-Seq
hisat
hisat2
alignment
7.7 years ago by
sslee1015
• 0
8
votes
8
replies
2.8k
views
Making chain files
Assembly
genome
alignment
sequence
updated 4.8 years ago by
Biostar
20 • written 4.8 years ago by
mc2548
▴ 50
8
votes
10
replies
2.0k
views
FASTA of translated amino acid sequences in their six reading frames, which one is the optimal?
aminoacid
protein
peptide
Reading
optimal
frames
2.8 years ago by
Luis999
▴ 20
8
votes
5
replies
1.7k
views
differential expression analysis with DESeq2 & edgeR
RNA-Seq
3.5 years ago by
Rob
▴ 170
8
votes
16
replies
1.4k
views
what is the ideal normalistation methods for TCGA gene expression or DNA methylation dtasets?
gene
next-gen
4.4 years ago by
Chaimaa
▴ 260
8
votes
9
replies
1.5k
views
superimpose
discovery
ds
visualizer
2.9 years ago by
Alex
▴ 20
8
votes
3
replies
3.4k
views
which tool is used for separating forward and reverse from paired end fastq
Assembly
6.8 years ago by
ranjini.shakthi
• 0
8
votes
1
reply
1.2k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors
gatk
trio
ped
3.3 years ago by
DareDevil
★ 4.3k
8
votes
9
replies
3.1k
views
error in rstudio
csv
matrix
rstudio
updated 19 months ago by
Ram
43k • written 8.7 years ago by
zizigolu
★ 4.3k
8
votes
4
replies
3.2k
views
How to use machine learning in Fastq/Fasta data?
machine learning
fasta
fastq
sequencing
7.0 years ago by
inkprs
▴ 70
8
votes
14
replies
2.6k
views
RNA-Seq analysis with standard p-value
RNA-Seq
7.3 years ago by
####
▴ 220
8
votes
4
replies
2.2k
views
Use Of Terms In Genome-Wide Analysis: Phenotype / Functionality / Fitness
12.8 years ago by
2184687-1231-83-
★ 5.1k
8
votes
11
replies
2.0k
views
using STAR instead of HISAT2
STAR
updated 22 months ago by
Ram
43k • written 22 months ago by
Chris
▴ 280
8
votes
7
replies
1.3k
views
grep with -f switch is not working
grep
updated 4.5 years ago by
zx8754
11k • written 4.5 years ago by
3335098459
▴ 30
8
votes
7
replies
6.0k
views
Download human 3 UTR FASTA file
genome
8.2 years ago by
bharata1803
▴ 560
8
votes
5
replies
2.0k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 8 months ago by
Ram
43k • written 2.6 years ago by
A_heath
▴ 160
8
votes
3
replies
859
views
How safe the UCSC is for patients data
RNA-Seq
updated 4.7 years ago by
ATpoint
82k • written 4.7 years ago by
Sara
▴ 260
8
votes
1
reply
1.6k
views
Genome Sequencing And Evolutionary History
evolution
updated 10.3 years ago by
Neilfws
49k • written 10.3 years ago by
robjohn7000
▴ 110
8
votes
8
replies
2.5k
views
6 follow
Blast Is Giving Me A Result Totally Unrelated To The Gene I Expect
blast
primer
updated 10.9 years ago by
Biostar
20 • written 11.1 years ago by
r.a.konrad
• 0
8
votes
5
replies
861
views
Frustrated with DEA results
microarray
differential-expression
updated 7 months ago by
dsull
★ 6.0k • written 7 months ago by
jopadrosa
• 0
8
votes
6
replies
2.6k
views
for low coverage RNAseq how many reads assigned is the bare minimum for differential gene expression analysis
RNA-Seq
5.3 years ago by
senowinski
▴ 30
8
votes
8
replies
1.8k
views
6 follow
DESeq2 adjusted p-values of 0 when p-value > 0.05
RNA-seq
DEseq2
updated 3.0 years ago by
rodolfo.peacewalker
▴ 390 • written 3.0 years ago by
Adrian
• 0
8
votes
10
replies
824
views
bash script
whole-genome-sequencing
updated 4 weeks ago by
Ram
43k • written 5 weeks ago by
bestone
▴ 30
8
votes
30
replies
5.3k
views
Per Base Sequence Content
sequencing
fastqc
genome
sequence
updated 4.2 years ago by
wm
▴ 560 • written 4.2 years ago by
Researcher
▴ 20
8
votes
5
replies
1.0k
views
Why could we infer a physical time scale (e.g. a billion year) from a phylogenetic analysis?
phylogeny
phylogenetic tree
4.5 years ago by
johnnytam100
▴ 110
1,000 results • Page
5 of 20
Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
Recent Locations •
All
Armenia,
1 minute ago
Hong Kong,
4 minutes ago
Austria,
5 minutes ago
Portugal,
8 minutes ago
United States,
10 minutes ago
Egypt,
14 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
14 minutes ago
Recent Awards •
All
Popular Question
to
syedahamdani94
• 0
Popular Question
to
mohammadhassanj
▴ 260
Scholar
to
dsull
★ 6.0k
Popular Question
to
finswimmer
16k
Popular Question
to
Ezequiel
• 0
Popular Question
to
alanh
▴ 170
Scholar
to
Peter
6.0k
Recent Replies
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Traffic: 1411 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6