Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
122,029 results • Page
580 of 2441
Sort: Rank
Rank
Views
Votes
Replies
1
vote
2
replies
2.3k
views
Differences in HISAT2 indexes for download
mapping
human
index
hisat2
4.1 years ago by
vitor
▴ 130
0
votes
3
replies
1.5k
views
Picard CalculateHsMetrics perTargetCoverage for Novaseq bams
Picard
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
genya35
▴ 50
2
votes
3
replies
2.1k
views
Intersecting compressed gVCF with bed file
bedtools
gVCF
intersect
updated 4.1 years ago by
Pierre Lindenbaum
166k • written 4.1 years ago by
graeme.thorn
▴ 110
0
votes
1
reply
1.3k
views
Get failed reads on Novaseq
basecalling
failed_reads
illumina
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
colindaven
8.0k
0
votes
0
replies
636
views
Consensus partitioning on merged microarray data
change
fold
consensus
microarray
partitioning
classification
normalization
4.1 years ago by
chriselhadi
• 0
0
votes
0
replies
726
views
Is it possible to report the allele frequency of integer copy numbers >= 3?
cn.mops
cnv
4.1 years ago by
curious
▴ 900
0
votes
1
reply
784
views
Validation in new sample
Validation
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
aredha2
▴ 10
1
vote
3
replies
1.2k
views
miRDeep2.pl error in make_html2.pl
miRNA
mirDeep
make_html2.pl
updated 2.4 years ago by
Ram
45k • written 4.1 years ago by
tikshyadav19
• 0
0
votes
0
replies
736
views
Segemehl -D option doesnt work for allowing differences
alignment
RNA-Seq
segemehl
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
Apex92
▴ 320
0
votes
9
replies
3.4k
views
Exec format error in unmapped bam file
bam
samtools
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
priya.bmg
▴ 70
28
votes
11
replies
31k
views
8 follow
Get gene names from rs SNP ids
SNP
rs
gene
updated 3.6 years ago by
Ram
45k • written 11.1 years ago by
Endre Bakken Stovner
▴ 970
0
votes
0
replies
1.2k
views
HaplotypeCaller Memory Optimization
calling
GATK
HPC
variant
4.1 years ago by
timothy.delory
▴ 20
0
votes
0
replies
570
views
NGS - sample purity assesment
ngs
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
Pinhole
• 0
1
vote
1
reply
1.1k
views
N50 is too short in de novo assembly
assembly
N50
genome
updated 4.1 years ago by
Istvan Albert
103k • written 4.1 years ago by
Takuma
▴ 20
4
votes
6
replies
3.0k
views
How to retrieved protein Fasta sequence from accession number by Entrez
protein
4.1 years ago by
Nelo
▴ 20
2
votes
4
replies
2.6k
views
GATK's GenomicsDBImport takes forever...
Variant
GATK
Calling
4.1 years ago by
Joel Wallenius
▴ 220
2
votes
3
replies
1.5k
views
mutiple fasta to single fasta
fasta
reference
visualisation
genome
updated 4.1 years ago by
Renesh
★ 2.2k • written 4.1 years ago by
setschmann
▴ 10
0
votes
0
replies
483
views
How to extract results from GSEA for visualization in Prism
14
4.1 years ago by
zhen.zhang
• 0
1
vote
4
replies
2.0k
views
Row names and probe names does not match in topTable output
rownames
topTable
limma
4.1 years ago by
Christine
• 0
3
votes
14
replies
4.2k
views
DGE from tumor-adjacent normal pair RNA-seq data. For an individual, no replicate
RNA-seq
DGE
statistics
tumor-normal
4.1 years ago by
field654
▴ 30
1
vote
4
replies
1.7k
views
help with mosaic plots
plots
mosaic
R
updated 4.1 years ago by
gglim
▴ 220 • written 4.1 years ago by
peter.berry5
▴ 60
0
votes
5
replies
1.9k
views
How to identify exon sequences
UTRs
exon
genome
updated 3.9 years ago by
tes.to
• 0 • written 4.1 years ago by
Ak
▴ 60
4
votes
2
replies
1.7k
views
How to write gffutils.feature.Feature object to file
gffutils
python
gff
4.1 years ago by
Irsan
★ 7.8k
0
votes
0
replies
953
views
Feature selection
Feature
Selection
R
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
cthangav
▴ 110
8
votes
6
replies
2.4k
views
6 follow
How to remove the header in fasta file and keep only the desirable part on ubuntu?
microbiome
fasta
NGS
updated 2.7 years ago by
Ram
45k • written 4.1 years ago by
Jelo
• 0
1
vote
1
reply
788
views
scanning sequences or promoter sequences with specific motifs
motifs
updated 4.1 years ago by
cpad0112
21k • written 4.1 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
1.2k
views
Why do annotating the same functionality with different databases produce different results?
kegg
annotation
eggnog
metagenomic
updated 4.1 years ago by
Jean-Karim Heriche
27k • written 4.1 years ago by
Xudong Li
▴ 10
7
votes
9
replies
11k
views
merge chipseq peaks with bedtools/other tool
ChIP-Seq
bedtools
macs2
updated 2.8 years ago by
Ram
45k • written 10.4 years ago by
s.vdrzeeuw
▴ 20
3
votes
7
replies
4.1k
views
Segmentation fault (core dumped) error when running MUSCLE
WSL
segmentation-fault
MUSCLE
updated 4.1 years ago by
5heikki
11k • written 4.1 years ago by
Zhang
• 0
1
vote
4
replies
2.2k
views
How does one harmonize WGS data with Microarray data?
WGS
Extract
from
SNPs
data
4.1 years ago by
Moni
• 0
0
votes
0
replies
930
views
How to map enriched pathways on whole metacyc pathway map?
MetaCyc
4.1 years ago by
dpc
▴ 250
2
votes
2
replies
1.6k
views
samtools mpileup fail to create bcf
mpileup
rfasta
samtools
4.0 years ago by
mthm
▴ 80
0
votes
1
reply
1.1k
views
How to get the genes from an identified motif using HOMER?
RNA
Motif
gene
ChIP
updated 2.9 years ago by
Ankit
▴ 520 • written 4.1 years ago by
veni
• 0
0
votes
1
reply
1.4k
views
Drug/small molecule databases with SMILES and chemical properties?
screening
cheminformatics
drug
updated 4.1 years ago by
srdjanmasirevic2
▴ 20 • written 4.1 years ago by
TonyCN
▴ 60
1
vote
0
replies
516
views
Can NMR protein structures be determined with water molecules?
structures
NMR
protein
4.1 years ago by
srdjanmasirevic2
▴ 20
0
votes
0
replies
568
views
How length is the cleaned degradome-seq reads?
read
degradome-seq
length
FATSA
cleaned
4.1 years ago by
Rey
• 0
3
votes
6
replies
4.6k
views
X amino acid in ensembl
aminoacid
alignment
ensembl
protein
sequence
updated 4.1 years ago by
lieven.sterck
16k • written 4.5 years ago by
Jason
• 0
0
votes
1
reply
1.7k
views
Job:
Postdoctoral fellow -- Bioinformatics/Genetics/Epidemiology
Biostatistics
Genetics
Epidemiology
updated 2.7 years ago by
Ram
45k • written 4.1 years ago by
zwangmanu
▴ 10
3
votes
6
replies
8.2k
views
6 follow
Extracting exons and transcripts from gff3/gtf
assembly
gtf
annotation
gff3
4.1 years ago by
mglasena
▴ 40
4
votes
5
replies
2.4k
views
WES data analysis with UMI barcode
UMI
WES
4.0 years ago by
Nickier
▴ 20
21
votes
10
replies
8.1k
views
Looking for a tool which provides mapping quality score distributions from BAM files
picard
samtools
multiqc
3.1 years ago by
Thomas
▴ 180
2
votes
6
replies
2.0k
views
Bowtie2 alignment error with different amount of reads in R1 and R2
bowtie2
chipseq
4.1 years ago by
vnewtoboiin
▴ 10
1
vote
5
replies
2.1k
views
BCFtools Allelic Depth format nowhere explained?
Allelic
Samtools
BCFtools
Depth
AD
4.1 years ago by
chrisgr
▴ 20
0
votes
0
replies
687
views
1001 Genome_SNP Matrix
STRUCTURE
GWAS
4.1 years ago by
Nikwan
• 0
2
votes
3
replies
3.7k
views
1001 Arabidopsis SNP
SNP
plink
vcf
updated 4.1 years ago by
Nikwan
• 0 • written 6.7 years ago by
shawn
▴ 20
0
votes
0
replies
861
views
Using machine learning methods to find a biomarker panel to diagnose a disease.
Machine-learning
feature-selection
training-dataset
Biomarker
RNAseq
4.1 years ago by
Sib
▴ 80
0
votes
1
reply
951
views
Should I expect high duplicate read frequency in my scRNA fastq's?
scRNA-seq
fastqc
multiqc
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
gt
▴ 30
6
votes
3
replies
6.7k
views
How do I load a GEO dataset into Seurat?
geo
dataset
seurat
scRNAseq
updated 3.9 years ago by
Mgnew
• 0 • written 4.1 years ago by
Audra
• 0
0
votes
3
replies
3.6k
views
GSEA plot, clusterprofiler
clusterprofiler
GSEA
updated 2.5 years ago by
PBC
▴ 10 • written 4.1 years ago by
szheng
• 0
1
vote
2
replies
3.0k
views
How to calculate probability of overlap between two sets
overlap
r
statistics
updated 4.1 years ago by
Istvan Albert
103k • written 4.1 years ago by
Apex92
▴ 320
122,029 results • Page
580 of 2441
Recent Votes
Dependent samples in DESeq2 - How to incorporate random factor?
Answer: Validating snRNA-seq cell type by correlating with other datasets
Answer: Strugling on the 3'rule of HGVS
Answer: Strugling on the 3'rule of HGVS
Answer: Modeling/simulations using SNPs data
Answer: Variant Normalization
Answer: Variant Normalization
Recent Locations •
All
Sweden,
6 minutes ago
United States,
6 minutes ago
Hong Kong,
7 minutes ago
Poland,
13 minutes ago
ETH Zurich,
13 minutes ago
Germany,
16 minutes ago
Japan,
17 minutes ago
Recent Awards •
All
Popular Question
to
Sara
▴ 40
Popular Question
to
WUSCHEL
▴ 860
Popular Question
to
shpak.max
▴ 60
Epic Question
to
Begonia_pavonina
▴ 210
Scholar
to
k-tarasov
▴ 10
Teacher
to
ATpoint
89k
Popular Question
to
Petesview
▴ 10
Recent Replies
Comment: MOuse Testis Enhancer region
by
Bioinformatics_16
• 0
![enter image description here][1] [1]: /media/images/0241beed-c410-47b0-b8e2-43534232
Answer: MOuse Testis Enhancer region
by
GenoMax
154k
It is not just you the site appears to be down right now: https://downforeveryoneorjustme.com/enhanceratlas.org?proto=http&www=1
Comment: Cells from normal sample were incorrectly classified as tumor cells using copyk
by
tujuchuanli
▴ 130
Since I'm running an automated pipeline to process multiple datasets, can I simply use the immune cells from CD45+ clusters in each dataset…
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
by
PolenP
▴ 10
I used 16Gb RAM, with `--threads 8` but both with and without `--threads` function took the same time. It produced 58Gb each pair so far. I…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
• 0
Thanks for the reply and suggestions. This software is a bit similar to galaxy. Recently, I am adding an application store for pipelines, s…
Answer: Modeling/simulations using SNPs data
by
Dave Carlson
★ 2.2k
I would recommend looking into using [SLiM][1] for forward-time population genetic simulations. It's widely used and very well documented, …
Answer: Strugling on the 3'rule of HGVS
by
Jeremy Leipzig
23k
> chrM : m.57T>TC, but according to the 3'rule it should be named m.60T>TC (if I understood correctly). no that cannot be shifted, like yo…
Answer: Extract fastq sequences based on date/time (which is in the header)
by
zhanxw
▴ 20
This tool can be helpful: https://github.com/angelovangel/nanotimes
Answer: Filter nanopore fastq files by start time
by
zhanxw
▴ 20
This is an efficient tool: https://github.com/angelovangel/nanotimes
Answer: Choosing enrichment analysis tool
by
i.sudbery
22k
Standard enrichement tools, like Metascape, Enrichr or David assume that under a model of no pathway being particularly involved in what yo…
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
k-tarasov
▴ 10
Thanks to colindaven answer, I managed to travel by hyperlinks to the source of the discrepancy. It seems that Nanopore tools compute *ave…
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
colindaven
8.0k
I agree completely. I think the cause is well discussed here : https://github.com/OpenGene/fastplong/issues/20 `fastplong` currently sti…
Comment: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
k-tarasov
▴ 10
Thank you for answer. No, I am looking at all reads before appllying any filters. There are 2,429,312 raw reads, and in 16s-wf pipeline I …
Comment: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
by
GenoMax
154k
Are you only looking at reads that satisfy this filter (which is in your command line in GitHub post) in your `seqkit` and `fastqc` reports…
Comment: Configuration file for DSP WTA
by
GenoMax
154k
> data starting from Fastq Generally did this with the entire flowcell folder and not fastq files. The data needs to be demultiplexed in a…
Traffic: 3928 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6