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Trim Nanopore Barcodes
barcodes Nanopore Trimming
updated 3.5 years ago by ▴ 760 • written 4.2 years ago by • 0
2
votes
1
reply
1.6k
views
GATK joint genotyping
GenotypeGVCFs VCF GATK joint-genotyping
updated 3.0 years ago by 23k • written 4.2 years ago by ▴ 10
0
votes
1
reply
1.6k
views
reference-guided denovo assembly
next-gen denovo stringTie Assembly genome assembl reference-guided
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 30
0
votes
3
replies
1.3k
views
Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 4.2 years ago by ▴ 840 • written 4.2 years ago by ▴ 590
0
votes
1
reply
1.4k
views
How to create partition file from concatenated phylip sequence?
alignment sequencing
updated 4.2 years ago by ★ 29k • written 4.2 years ago by • 0
0
votes
1
reply
2.0k
views
Arranging meta nodes into a circular layout in Cytoscape
circular cytoscape enrichmentmap analysis layout network
updated 4.2 years ago by ▴ 10 • written 4.2 years ago by ▴ 10
0
votes
0
replies
536
views
Agilent G3 GEx Rat V2 Analysis
Agilent analysis backgroundcorrection DE
4.2 years ago by AB • 0
0
votes
2
replies
746
views
Rainbow-fied bams in igv
alignment bwa gatk
4.2 years ago by Siddharth • 0
1
vote
1
reply
750
views
Checking for gene expression in transcriptome - 1 sample RNASeq
gene expression
updated 4.2 years ago by ▴ 480 • written 4.2 years ago by • 0
6
votes
3
replies
5.3k
views
Input arguments for AddOrReplaceReadGroups (Picard) from fastq
Picard GATK
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 60
1
vote
3
replies
2.2k
views
Which GWGAS Tool is 'better', MAGMA or LDSC?
software GWAS analysis comparison gene-based
updated 4.2 years ago by ★ 4.8k • written 4.2 years ago by • 0
2
votes
1
reply
1.3k
views
Soybean's NCBI Entrez ID to Glyma ID conversion annotation
RNASeq Entrez annotation soybean ID Glyma
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 20
4
votes
14
replies
3.3k
views
Get Chromosome Annotation
R annotation
updated 4.2 years ago by ★ 1.7k • written 4.3 years ago by ▴ 90
0
votes
0
replies
639
views
circusplot:-adding additional layer or track to indicate additional futures
r
4.2 years ago by adR ▴ 130
0
votes
0
replies
845
views
Job: Postdoc in Metabolic Engineering
CRISPR FACS HPLC biology molecular
4.2 years ago by info ▴ 80
0
votes
2
replies
1.1k
views
Functional sub-grouping of orthogroup sequences
orthology
4.2 years ago by Dunois ★ 2.9k
0
votes
1
reply
677
views
Optional Link to acess KOBAS
KOBAS LINK
updated 3.0 years ago by 45k • written 4.2 years ago by • 0
3
votes
3
replies
5.0k
views
How to connect htseq-count to DESeq2?
R RNA-Seq next-gen DEG Mapping
updated 4.2 years ago by ▴ 50 • written 6.1 years ago by ▴ 120
6
votes
7
replies
2.6k
views
Tools for screening the influence/importance of covariates in multidimensional data
R PCA confounding batch regression
4.2 years ago by Papyrus ★ 3.1k
0
votes
0
replies
839
views
Calculating derived allele frequency
allele-frequency variants vcf genome ESP
4.2 years ago by peter ▴ 20
2
votes
1
reply
1.1k
views
Is strand specific library always better for RNA-seq?
de_novo_assembly RNA-seq library_preparation strand-specific
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 30
1
vote
3
replies
3.3k
views
plink2 tell "--glm" to use dosage instead of hardcalls
plink2 gwas imputation
3.5 years ago by nhaus ▴ 420
3
votes
8
replies
2.7k
views
Query for limma and DEseq2
deseq2 limma
updated 2.6 years ago by 45k • written 4.2 years ago by ▴ 20
0
votes
0
replies
712
views
Data Visualization tool for mutations difference between primary and metastatic tumor.
metastasis visualization wgs varscan2 mutations
4.2 years ago by moustafa_abohawya ▴ 30
2
votes
4
replies
2.6k
views
How to set the number of mismatch in blastn
blastn mismatch penalty
updated 4.2 years ago by 22k • written 4.2 years ago by • 0
0
votes
4
replies
1.2k
views
Finding all pathogens for a disease
database Textmining
4.2 years ago by tra.0831 • 0
0
votes
0
replies
1.0k
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
4.2 years ago by pt.taklifi ▴ 70
0
votes
0
replies
703
views
How to show that one docking is better than another with Pymol visually
docking structure pymol pdb
4.2 years ago by gundalav ▴ 380
0
votes
1
reply
1.0k
views
Snakemake error with blast
Blast cd Snakemake
4.2 years ago by kamanovae ▴ 100
0
votes
0
replies
590
views
Docking
gromacs autodock docking
updated 2.8 years ago by 45k • written 4.2 years ago by • 0
4
votes
2
replies
1.3k
views
DESeq2: impact of number of expressed genes in differential expression analysis
genes number of DESeq2 expressed
4.2 years ago by mbk0asis ▴ 700
0
votes
0
replies
578
views
Prompt doesn’t autocomplete with tab key
mothur autotab
4.2 years ago by Mario • 0
0
votes
1
reply
2.9k
views
HMMCopy readcounter
readcounter ichorCNA CNV HMMcopy
updated 4.2 years ago by 153k • written 4.4 years ago by ▴ 120
3
votes
3
replies
1.7k
views
separate multi-alleles from bi-alleles
genetics population
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 180
0
votes
1
reply
732
views
COVID 19 analysis workflow
Workflow COVID19
updated 4.2 years ago by 153k • written 4.2 years ago by • 0
1
vote
3
replies
1.9k
views
ClustalW using Biopython
clustalw biopython fasta fastq
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 20
0
votes
0
replies
636
views
What is the appropriate Limma design matrix for the interaction between sex and age?
r microarray limma
4.2 years ago by lintek08 • 0
0
votes
2
replies
989
views
Code output inconsistency
codon python
updated 2.5 years ago by 45k • written 4.2 years ago by • 0
0
votes
0
replies
518
views
PDB and corresponding gene ID/ nucleotide sequence database
PDB gene
4.2 years ago by dnlburns808 • 0
0
votes
1
reply
3.5k
views
DESeq2 results function not working
differential expression bioconductor R
updated 4.2 years ago by ★ 19k • written 4.2 years ago by • 0
3
votes
14
replies
3.7k
views
Trouble getting BLAT to work
Blat
updated 4.2 years ago by 153k • written 4.2 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Opposing expression profiles in the same WGCNA module
clustering WGCNA
4.2 years ago by cfourps ▴ 10
18
votes
24
replies
6.8k
views
6 follow
Free to use bioinformatics servers & large memory
Server
updated 4.2 years ago by 45k • written 4.2 years ago by ▴ 70
15
votes
21
replies
21k
views
10 follow
gff3 to CDS fasta
genome sequence gff3
updated 4.2 years ago by ▴ 260 • written 8.8 years ago by ▴ 50
0
votes
1
reply
859
views
Copy number alteration prediction from DNA-seq
dataset Genomic DNAseq gene CNA
updated 4.2 years ago by 89k • written 4.2 years ago by • 0
0
votes
0
replies
711
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
4.2 years ago by paria ▴ 110
2
votes
2
replies
3.1k
views
How Should I Deal with Paired-End Shotgun Metagenomic Reads for DIAMOND Analysis?
diamond metagenomics megan paired-end
updated 4.2 years ago by 35k • written 4.2 years ago by ▴ 10
2
votes
6
replies
3.6k
views
7 follow
Handling manhattan plots in vector graphics editors
snp SNP R
updated 4.2 years ago by ★ 3.1k • written 7.0 years ago by ▴ 20
0
votes
4
replies
1.6k
views
Lexogen Quantseq Mapping Rates with Salmon
Quantseq RNAseq Salmon Lexogen Mapping
4.1 years ago by abnerapsley • 0
0
votes
0
replies
595
views
Increase in discordant alignments with Bowtie2 after changing trimming stringency?
cutadapt trimgalore ATAC-seq stringency bowtie2
4.2 years ago by uli • 0
121,831 results • Page 615 of 2437
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thank you.
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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> Read in data Add an example of what is in `data.csv`.
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That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
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Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
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Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
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Have you followed the insturctions for GenBank submissions here: https://submit.ncbi.nlm.nih.gov/about/genbank/ In any case it would be be…
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The denser the panel, the better. TOPMed provides maximum density and the best coverage of rare variants. It is the most powerful option, b…
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