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7
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452
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6 follow
Forum: R - A bioinformatic analysis programming language for NGS
bioinformatics R BI NGS
updated 2 days ago by 32k • written 4 days ago by ▴ 120
12
votes
13
replies
444
views
Forum: Bioinformatics startup market analysis
startup
4 days ago by gtechbio ▴ 30
1
vote
1
reply
91
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 5 days ago by 12k • written 5 days ago by ▴ 20
2
votes
1
reply
4.4k
views
Forum: Biostar Forum Posting Guidelines
Forum
written 9.0 years ago by 87k
14
votes
7
replies
278
views
6 follow
Forum: What to put in my Github
Github
updated 5 days ago by ★ 2.4k • written 6 days ago by ▴ 20
281
votes
54
replies
10k
views
39 follow
Forum: What Do You Waste Your Time On
bioinformatics scripting Forum
updated 7 days ago by ▴ 170 • written 7.9 years ago by 8.6k
11
votes
5
replies
316
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
9 days ago by tiagobellintani ▴ 20
17
votes
20
replies
755
views
6 follow
Forum: bioinformatics thesis
thesis
updated 7 days ago by 32k • written 10 days ago by ▴ 30
2
votes
13
replies
689
views
8 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 2 days ago by 32k • written 12 days ago by ▴ 300
44
votes
23
replies
4.4k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 13 days ago by 32k • written 3.1 years ago by 98k
18
votes
8
replies
533
views
8 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 14 days ago by 12k • written 20 days ago by 20k
4
votes
2
replies
252
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 17 days ago by 99k • written 18 days ago by ▴ 570
1
vote
1
reply
132
views
Forum: Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 19 days ago by 87k • written 19 days ago by ▴ 120
53
votes
11
replies
2.3k
views
13 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
bioinformatics Forum library
written 6 months ago by 5.8k
1
vote
0
replies
110
views
Forum: Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
3 days ago by guoxuantong ▴ 120
0
votes
1
reply
136
views
Forum: Apache Spark on AWS
apachespark
updated 27 days ago by 20k • written 27 days ago by ★ 1.1k
9
votes
5
replies
469
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome Forum
27 days ago by nickroseae ▴ 10
50
votes
20
replies
3.4k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics Forum
updated 28 days ago by 48k • written 5.1 years ago by ★ 1.0k
3
votes
2
replies
299
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
machine learning computer scientist Forum
updated 29 days ago by 98k • written 29 days ago by • 0
3
votes
5
replies
413
views
Forum: Hide Emails from Guests
biostars Forum
written 4 months ago by ▴ 570
23
votes
9
replies
2.8k
views
8 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
4 weeks ago by Joe 19k
170
votes
88
replies
12k
views
23 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
written 13 months ago by 87k
0
votes
0
replies
104
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq R sequencing Forum
updated 5 weeks ago by 10k • written 5 weeks ago by ▴ 40
28
votes
7
replies
709
views
Forum: Do you have favorite icons for bioinformatics?
software error Forum
updated 5 weeks ago by 11k • written 5 weeks ago by ▴ 140
0
votes
0
replies
110
views
Forum: Determining Heteroplasmy per sample
Heteroplasmy per sample in VCF file bcftools Forum
5 weeks ago by katendejohnspeke • 0
4
votes
4
replies
190
views
Forum: Looking for a CS PhD Program + tips
PhD Forum
6 weeks ago by lodicakes • 0
16
votes
4
replies
717
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
bioconda conda bowtie2 tbb software error Forum
updated 6 weeks ago by 98k • written 6 weeks ago by ▴ 110
6
votes
4
replies
3.9k
views
Forum: Chip-Seq Data Analysis
chip-seq Forum
updated 6 weeks ago by • 0 • written 8.9 years ago by ★ 1.1k
1
vote
2
replies
606
views
Forum: Discussion on effects of Gain-of-Function mutations
protein missense variants Forum
updated 6 weeks ago by 48k • written 6 weeks ago by ★ 2.0k
121
votes
44
replies
21k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 4.6 years ago by ▴ 780
2
votes
0
replies
228
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
bioinformatics courses Forum
updated 6 weeks ago by 32k • written 6 weeks ago by ▴ 20
19
votes
4
replies
373
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
SNP forum survey papers bioinformatics Forum
updated 6 weeks ago by ★ 10k • written 6 weeks ago by ★ 1.1k
1
vote
0
replies
155
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open data Forum
6 weeks ago by Emily_Ensembl 22k
0
votes
1
reply
144
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
job Forum
updated 7 weeks ago by 99k • written 7 weeks ago by ★ 1.0k
13
votes
3
replies
5.6k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd Forum
updated 7 weeks ago by 9.7k • written 8.9 years ago by 48k
15
votes
9
replies
352
views
7 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education Forum
written 8 weeks ago by ▴ 40
1
vote
4
replies
157
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP Forum
7 weeks ago by mfshiller ▴ 10
1
vote
4
replies
347
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis Forum
7 weeks ago by cyntsc10 • 0
4
votes
6
replies
277
views
Forum: What are some areas of bioinformatics that are overdone?
meta Forum
updated 7 weeks ago by 87k • written 7 weeks ago by 20k
3
votes
3
replies
177
views
Forum: How to change my email address
email address change account management Forum
7 weeks ago by Bosberg ▴ 30
12
votes
1
reply
478
views
Forum: Best programming language for bioinformatics - R Language
programming R Forum
2 days ago by guoxuantong ▴ 120
2
votes
5
replies
147
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R Forum
8 weeks ago by steve ★ 2.9k
6
votes
5
replies
253
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment Forum
updated 9 weeks ago by 32k • written 9 weeks ago by ▴ 20
40
votes
24
replies
808
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
R Python Programming Scripting Forum
updated 9 weeks ago by 9.7k • written 9 weeks ago by ▴ 30
0
votes
3
replies
468
views
Forum: MOOC for AI and Machine learning for Bioinformatics
AI/ML Forum
updated 9 weeks ago by ▴ 240 • written 7 months ago by ★ 1.4k
0
votes
0
replies
129
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq Forum
9 weeks ago by Seaweed • 0
56
votes
43
replies
8.7k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
RNA-Seq NGS alignment genome sequence Forum
updated 9 weeks ago by ▴ 20 • written 2.2 years ago by 9.6k
22
votes
7
replies
576
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
RNA-Seq R cytoscape Forum
written 12 weeks ago by ▴ 50
7
votes
4
replies
253
views
Forum: Employer Insights for Bioinformatics Job Seekers
career job advice Forum
updated 11 weeks ago by ▴ 10 • written 11 weeks ago by ▴ 120
7
votes
19
replies
412
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
RNA-Seq Tool Forum
written 3 months ago by ▴ 10
1,338 results • Page 1 of 27
Recent Votes
Answer: Duplicated Gene Symbol names after geneID conversion
A: Merge contigs in fasta file
Answer: Make New Orig.ident in seurat object or
How to combine 2 incomplete GTF
Answer: How to combine 2 incomplete GTF
Comment: How to merge two GTFs which share some common features
Answer: single tumor vs multiple normal sample differential gene expression (RNA-Seq ) a
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Recent Replies
Comment: RNAseq by Kevin Blighe 72k
Hi, can you please choose a more informative question title? Also, can you take a look at how I use `gffread`, here: https://www.biostars.…
Comment: Up-to-date GWAS Power Calculator and GWAS power comparison by moxu ▴ 480
Hi Kevin, Thanks for the reply. I had checked out CaTS before posting above. However, I am not sure if CaTS does what I want to do. Suppo…
Comment: Arlequin problem (different loci number among different genotypes) by wangh920 • 0
For sure, The reason why this happen is because SNP calling generate a couple of biallelic SNP, such as GC, GT or GCT, GCG. These allelic…
Answer: Make New Orig.ident in seurat object or by fracarb8 ▴ 140
You can use `strsplit` to extract the first entry before the `_` metadata <- seurat_object@meta.data metadata$orig.ident <- …
Comment: How to solve the problem when I get error message "column 1 is not a genotype ob by Bornali • 0
Hi Devon Ryan. I am trying to add genotype object to my SNP data set. I am unable to use the codes described in the subsequent comment as m…
Comment: Duplicated Gene Symbol names after geneID conversion by asumani ▴ 70
opss, didn't notice that thread. many thanks!
Answer: Duplicated Gene Symbol names after geneID conversion by GenoMax 99k
See: https://www.biostars.org/p/352492/#352535
Comment: Can't count features with featurecount by avelarbio46 ▴ 10
After using these options, I got decreased aligment in general than with "-F GTF -s 0 -p -T 8 -a ". I have not tried with -M and -O on 1 or…
Comment: How to merge two GTFs which share some common features by GenoMax 99k
See the answers and discussion in: https://www.biostars.org/p/9465577/
Comment: single tumor vs multiple normal sample differential gene expression (RNA-Seq ) a by sumitguptabt ▴ 10
Dear @atpoint Thank you so much for your help, I can not describe my happiness. I run your script and got the output as you see in the att…
Comment: How to run SPAdes assembler with bam files? by GenoMax 99k
Sorted files compress better so the size being smaller is not a particular surprise. Have you checked to see that you are getting reads at …
Comment: How to run SPAdes assembler with bam files? by marongiu.luigi ▴ 560
Thank you. Actually I am getting an unmapped.bam file of 132 Mb, a sorted version of 34 Mb (shouldn't they be the same weight) and fastq of…
Comment: Bioinformatics Solutions on AWS by Jillian ▴ 20
I had that pointed out to me, but thanks for the heads up! I know it's a problem. I wrote the book using Sphinx, and I have to figure out h…
Comment: Performance metrics of aligners and variant callers by Devon Ryan 98k
Have you searched pubmed? By now there must be hundreds of papers that do this. Just read a few if you're uncertain which tools might work …
Comment: Bioinformatics Solutions on AWS by robbinespu • 0
All of citation href link on you site are not available for example https://www.dabbleofdevops.com/200-references/citations.html#bwa
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