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1,000 results • Page
1 of 20
Sort: Rank
Rank
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Votes
Replies
0
votes
0
replies
91
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 10 hours ago by
Ram
43k • written 19 hours ago by
Mohammed
• 0
1
vote
3
replies
379
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
3 days ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
496
views
Forum:
Bioinformatics career transition
career
forum
updated 4 days ago by
jared.andrews07
★ 16k • written 4 days ago by
jevill17
▴ 20
4
votes
2
replies
379
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
9 days ago by
Anatoly A.
▴ 10
6
votes
6
replies
670
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
12 days ago by
jared.andrews07
★ 16k
0
votes
0
replies
113
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 14 days ago by
Ram
43k • written 14 days ago by
Zhenyu Zhang
★ 1.1k
0
votes
2
replies
272
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
14 days ago by
Dave Carlson
★ 1.6k
31
votes
12
replies
771
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
18 days ago by
karlaarz
▴ 90
5
votes
4
replies
452
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 25 days ago by
GenoMax
140k • written 25 days ago by
Mango
▴ 10
1
vote
2
replies
297
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 26 days ago by
ATpoint
81k • written 26 days ago by
ashaneev07
▴ 20
8
votes
7
replies
681
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 28 days ago by
emmanouil.a
▴ 120 • written 6 weeks ago by
harasharan
• 0
1
vote
0
replies
218
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 4 weeks ago by
Pierre Lindenbaum
160k • written 4 weeks ago by
Bogdan
★ 1.4k
4
votes
2
replies
308
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 5 weeks ago by
dsull
★ 5.6k • written 5 weeks ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.8k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.1 years ago by
Asaf
10k
0
votes
0
replies
146
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Akos
▴ 20
2
votes
3
replies
373
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
7 weeks ago by
Ajay A Shettigar
• 0
17
votes
11
replies
842
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
8 weeks ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.0k
views
Forum:
How to learn bioinformatics?
learning
updated 8 weeks ago by
Samuel Lampa
★ 1.3k • written 22 months ago by
sakichwan
▴ 20
26
votes
27
replies
1.8k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 8 weeks ago by
dsull
★ 5.6k • written 9 weeks ago by
Rozita
▴ 40
7
votes
6
replies
649
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Petur
▴ 20
21
votes
12
replies
3.4k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
8 weeks ago by
Ram
43k
2
votes
1
reply
313
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
9 weeks ago by
LauferVA
4.0k
49
votes
20
replies
1.9k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 10 weeks ago by
Michael Love
★ 2.6k • written 10 weeks ago by
Mensur Dlakic
★ 26k
4
votes
3
replies
674
views
Forum:
How to get started in bioinformatics
students
updated 9 weeks ago by
Ram
43k • written 11 weeks ago by
Soidihane
▴ 10
2
votes
2
replies
529
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 11 weeks ago by
Ram
43k • written 11 weeks ago by
cwwong13
▴ 40
0
votes
2
replies
1.9k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 11 weeks ago by
GenoMax
140k • written 11 weeks ago by
Mango
▴ 10
5
votes
3
replies
506
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 3 months ago by
Mensur Dlakic
★ 26k • written 3 months ago by
Konstantin
▴ 20
6
votes
2
replies
577
views
Forum:
how to start Bioinformatics?
basics
updated 3 months ago by
Mensur Dlakic
★ 26k • written 3 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.0k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
3 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
839
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 3 months ago by
Ram
43k • written 3 months ago by
Daniel
• 0
1
vote
1
reply
440
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 3 months ago by
Ram
43k • written 3 months ago by
Afeef
• 0
3
votes
5
replies
946
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 3 months ago by
Ram
43k • written 4 months ago by
Paulo
• 0
21
votes
11
replies
2.3k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 3 months ago by
Jeremy Leipzig
22k • written 12 months ago by
bompipi95
▴ 140
176
votes
46
replies
18k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
4 months ago by
Istvan Albert
100k
3
votes
2
replies
578
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 4 months ago by
fturner
▴ 10 • written 4 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
336
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 4 months ago by
Ram
43k • written 4 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.2k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
4 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.3k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
4 months ago by
UT_FAN
▴ 40
0
votes
0
replies
382
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
5 months ago by
ishwarvh
• 0
0
votes
0
replies
307
views
Forum:
Automated Checks And QA
retrospective
5 months ago by
Sasha
▴ 830
7
votes
13
replies
1.2k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 5 months ago by
Ram
43k • written 5 months ago by
kieran
▴ 10
21
votes
7
replies
11k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 5 months ago by
Gennady Khvorykh
▴ 100 • written 7.9 years ago by
Sukhi Singh
11k
3
votes
3
replies
808
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 5 months ago by
Ram
43k • written 6 months ago by
S
• 0
19
votes
14
replies
1.9k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 6 months ago by
Jeremy Leipzig
22k • written 6 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.4k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 6 months ago by
vincenthus
▴ 70 • written 6 months ago by
Sasha
▴ 830
9
votes
6
replies
1.8k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 6 months ago by
ATpoint
81k • written 16 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
561
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 6 months ago by
Ram
43k • written 6 months ago by
Fouad
▴ 20
3
votes
6
replies
1.3k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
6 months ago by
anasjamshed
▴ 120
2
votes
5
replies
899
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 5 months ago by
Ram
43k • written 6 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.1k
views
Forum:
open source projects looking for contributors
open-source
updated 6 months ago by
vincenthus
▴ 70 • written 6 months ago by
claudiofr
▴ 20
1,000 results • Page
1 of 20
Recent Votes
Answer: Differential express genes in imbalance groups
Answer: Differential express genes in imbalance groups
Comment: Differential express genes in imbalance groups
Answer: Differential express genes in imbalance groups
Comment: Differential expression at pathway level
A: Difference between heatmap using Euclidian distance and Poisson distance
A: Difference between heatmap using Euclidian distance and Poisson distance
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Popular Question
to
aUser
▴ 30
Teacher
to
Gordon Smyth
★ 6.9k
Popular Question
to
H.Hasani
▴ 990
Popular Question
to
kcarey
• 0
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bioinfo
▴ 150
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Duarte Molha
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Zhenyu Zhang
★ 1.1k
Recent Replies
Answer: Downloading epigenetic and mutation data of specific TCGA BRCA samples
by
aUser
▴ 30
Hi, you might have solve the problem, but for the future reference, I am writing this. The nomenclature of TCGA data set is explained here:…
Comment: error in wigToBigWig while converting mappability to bedgraph
by
Dora
▴ 10
Thank you so much for your reply! here is what I have after entering the command variableStep#chrom=NT_173277.1 Cavia porcellus strain…
Comment: Differential express genes in imbalance groups
by
Chris
▴ 260
Wow, the author of the tool reply. Thank you so much!
Comment: t-test in two groups, multiple rows
by
sooni
▴ 20
It was my mistake. I converted the dataframe to matrix. It works! Thank you!
Comment: Differential express genes in imbalance groups
by
Gordon Smyth
★ 6.9k
I do mean the quality of each sample (as measured by residual variability in the linear model, in other words by consistency with other sam…
Comment: Differential express genes in imbalance groups
by
Chris Dean
▴ 390
That sounds super interesting. I have never heard of this approach before. When you say 'sample quality weights' are you referring to dif…
Answer: Beagle Phasing and Imputation
by
LChart
3.8k
Not doable with older versions of beagle. I seem to recall that it used to be recommended to re-code the sex chromosomes of males in the re…
Answer: Differential express genes in imbalance groups
by
Gordon Smyth
★ 6.9k
Imbalanced group sizes are no problem. Just analyse the data as it is. No need to throw data away! For a human study with a large number o…
Comment: Trim Galore: Automatic detection of adapters
by
Daniel
▴ 30
Got it, this clears things up. Thank you!
Answer: basal gene expression level
by
LChart
3.8k
I haven't seen any reliable way to estimate absolute RNA concentrations from sequencing data. Methods have been developed using [housekeepi…
Answer: Seurat 5 integration
by
jared.andrews07
★ 16k
You are still free to change whichever parameters you want for whichever method you're using. See `?IntegrateLayers` and whichever method y…
Answer: scRNAseq normalization
by
ATpoint
81k
It's perfectly fine to use log-transformation. The advantages of these more complicated methods usually depend on context and also on the w…
Answer: scRNAseq normalization
by
dsull
★ 5.6k
No, your log-transform might indeed be ok (or even better) for your analysis of interest. See https://www.nature.com/articles/s41592-023…
Answer: Transcription Start Site
by
el24
▴ 40
Here is a simple pythonic way to use biomart: import pybiomart as pbm dataset = pbm.Dataset(name='hsapiens_gene_ensembl', host="h…
Comment: data background noise
by
marco.barr
▴ 30
Thank you very much for your response. I've been calling it background noise, but perhaps we're saying the same thing. I mean, I really wan…
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