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Forum:  Where To Look For Quality Bioinformatics Short Courses And Workshops?
Forum bioinformatics
updated 1 day ago by 34k • written 7.8 years ago by 11k
0
votes
1
reply
149
views
Forum:  Opinions on SLAM-Seq for Differential Gene Analysis
DGE RNA-Seq htseq
updated 7 days ago by ★ 2.0k • written 8 days ago by ▴ 20
0
votes
1
reply
71
views
Forum:  What can you detect with PE150bp shotgun sequencing with 100X depth
sequencing
updated 9 days ago by ★ 2.2k • written 9 days ago by • 0
1
vote
4
replies
164
views
Forum:  Is WGS reliable for larges indels and duplication?
sequencing
updated 8 days ago by ★ 3.0k • written 9 days ago by • 0
0
votes
1
reply
757
views
Forum:  Basic beginner bioinformatics for biochemistry for university first year students
books course
updated 12 days ago by 10k • written 12 days ago by • 0
9
votes
6
replies
625
views
Forum:  When applying to a PhD program in Harvard or MIT, how many publications are recommended?
GradSchool Grad Harvard School Application
updated 7 days ago by ★ 11k • written 14 days ago by • 0
0
votes
3
replies
147
views
Forum:  what for masters?
microbio masters
updated 15 days ago by ▴ 1000 • written 16 days ago by • 0
0
votes
2
replies
165
views
Forum:  Study Materials
learning study materials
15 days ago by AHa • 0
6
votes
3
replies
176
views
Forum:  Asking for content suggestions for updated bioinformatics book
python
updated 17 days ago by 50k • written 17 days ago by ▴ 680
8
votes
13
replies
733
views
6 follow
Forum:  What are the pain points in genomic variant interpretation/annotation processes?
analysis variant
16 days ago by Rick Kim ▴ 40
3
votes
2
replies
196
views
Forum:  Given my background, what are my chances of being accepted into a PhD program at Harvard/MIT?
mit PhD gradschool admission harvard
updated 20 days ago by 34k • written 25 days ago by • 0
2
votes
0
replies
6.0k
views
Forum:  Biostar Forum Posting Guidelines
Forum
updated 25 days ago by • 0 • written 9.2 years ago by 88k
0
votes
2
replies
202
views
Forum:  Bioinformatics internship in Europe
europe internship
updated 29 days ago by • 0 • written 29 days ago by • 0
5
votes
4
replies
238
views
Forum:  Detailed Textbooks for bioinformatics and computational biology
Bioinformatics genomics Computational biomedical
updated 29 days ago by ★ 11k • written 29 days ago by • 0
10
votes
7
replies
433
views
Forum:  Conceptual - Do I need to justify myself if I generate more than three replicates?
statistics conceptual
29 days ago by c_u ▴ 300
2
votes
2
replies
152
views
Forum:  reporting differentially expressed genes in a global RNA-seq study
DESeq2 RNA-seq expression heatmaps transcriptomics
5 weeks ago by thomas.welch ▴ 50
12
votes
8
replies
466
views
Forum:  Starting a collective twitter account "Bioinformatician Underhood"
sci-comm bioinformatics
5 weeks ago by German.M.Demidov ★ 2.2k
2
votes
2
replies
197
views
Forum:  https://biostar.slack.com account
ngs
updated 5 weeks ago by 102k • written 5 weeks ago by ▴ 10
1.1k
votes
190
replies
36k
views
104 follow
Forum:  What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 5 weeks ago by ▴ 690 • written 10.2 years ago by 20k
6
votes
12
replies
7.8k
views
11 follow
Forum:  Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university Forum
updated 6 weeks ago by 34k • written 4.7 years ago by ▴ 20
0
votes
2
replies
182
views
Forum:  Phylogenomic study: suggestions and tips
evolution species genus phylogenomic phylogenetics
6 weeks ago by tiagobellintani ▴ 40
0
votes
0
replies
86
views
Forum:  How is is is xxx?
sum-of-airs
5 weeks ago by aa • 0
0
votes
2
replies
236
views
Forum:  How to write a function (Python 3.8) to find FASTA entry for DNA sequence
coding programming genetics python DNA
updated 7 weeks ago by ★ 10k • written 7 weeks ago by • 0
6
votes
9
replies
360
views
Forum:  2021: state and usuge of compressed file standards better than BAM and FASTQ
fastq compression bam
updated 7 weeks ago by 9.8k • written 7 weeks ago by ★ 4.9k
290
votes
55
replies
11k
views
41 follow
Forum:  What Do You Waste Your Time On
scripting Forum foo bioinformatics
updated 23 days ago by 88k • written 8.1 years ago by 8.6k
14
votes
14
replies
1.0k
views
7 follow
Forum:  Bioinformatics startup market analysis
startup
written 9 weeks ago by ▴ 30
17
votes
21
replies
1.4k
views
8 follow
Forum:  bioinformatics thesis
thesis
updated 7 weeks ago by 19k • written 10 weeks ago by ▴ 30
0
votes
0
replies
100
views
Forum:  CADD Error in EXOMISER
exomiser cadd
7 weeks ago by shwetan • 0
3
votes
1
reply
169
views
Forum:  Interested in benchmarks? Please take our survey!
benchmarking
7 weeks ago by Jeremy Leipzig 20k
2
votes
2
replies
215
views
Forum:  What is your experience with the customer support of Oxford University Press?
oup
updated 8 weeks ago by 74k • written 9 weeks ago by ▴ 20
6
votes
5
replies
417
views
Forum:  protein-protein interaction analysis
string database
8 weeks ago by au.rinki.bio ▴ 10
17
votes
9
replies
627
views
8 follow
Forum:  Future of Microarrays
Microarrays
updated 8 weeks ago by 19k • written 8 weeks ago by ▴ 10
8
votes
8
replies
801
views
6 follow
Forum:  R - A bioinformatic analysis programming language for NGS
bioinformatics R BI NGS
updated 9 weeks ago by 34k • written 9 weeks ago by ▴ 130
14
votes
7
replies
531
views
6 follow
Forum:  What to put in my Github
Github
updated 9 weeks ago by ★ 2.5k • written 9 weeks ago by ▴ 20
11
votes
6
replies
557
views
Forum:  Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
7 weeks ago by tiagobellintani ▴ 40
2
votes
13
replies
1.0k
views
8 follow
Forum:  Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 9 weeks ago by 34k • written 10 weeks ago by ▴ 310
44
votes
23
replies
4.5k
views
6 follow
Forum:  biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 10 weeks ago by 34k • written 3.2 years ago by 99k
19
votes
8
replies
723
views
9 follow
Forum:  What are some major historic shifts in bioinformatic methodologies?
meta history
updated 10 weeks ago by 12k • written 11 weeks ago by 20k
4
votes
2
replies
356
views
Forum:  Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 11 weeks ago by 102k • written 11 weeks ago by ▴ 590
1
vote
1
reply
204
views
Forum:  Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 11 weeks ago by 88k • written 11 weeks ago by ▴ 130
54
votes
11
replies
2.6k
views
13 follow
Forum:  Rust or C++, what to learn after Go for high-performance bioinformatics tools?
bioinformatics Forum library
written 8 months ago by 5.9k
1
vote
0
replies
163
views
Forum:  Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
9 weeks ago by Louise ▴ 130
0
votes
1
reply
195
views
Forum:  Apache Spark on AWS
apachespark
updated 12 weeks ago by 20k • written 12 weeks ago by ★ 1.1k
9
votes
5
replies
568
views
Forum:  Should I get my MS in Bioinformatics at UCSC or GA Tech
genome Forum
12 weeks ago by nickroseae ▴ 10
50
votes
20
replies
3.6k
views
18 follow
Forum:  Explain bioinformatics to a 10 year old
bioinformatics Forum
updated 3 months ago by 50k • written 5.3 years ago by ★ 1.0k
3
votes
2
replies
483
views
Forum:  If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
machine learning computer scientist Forum
updated 3 months ago by 99k • written 3 months ago by • 0
3
votes
5
replies
465
views
Forum:  Hide Emails from Guests
biostars Forum
written 6 months ago by ▴ 590
23
votes
9
replies
3.0k
views
8 follow
Forum:  Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
3 months ago by Joe 19k
182
votes
88
replies
12k
views
23 follow
Forum:  Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
updated 7 weeks ago by 74k • written 15 months ago by 88k
0
votes
0
replies
145
views
Forum:  Tools to check if the user defined pathway is enriched in the data
RNA-Seq R sequencing Forum
updated 3 months ago by 10k • written 3 months ago by ▴ 40
1,000 results • Page 1 of 20
Recent Votes
Does Last aligner only outputs the mapped reads to a bam file ?
compute coverage with file.bam and bed : bedtools empty output
Comment: Co-occurrence of proteins of two families
What is the fastest way to create an online server that allows searching through a table
Answer: Co-occurrence of proteins of two families
Comment: Co-occurrence of proteins of two families
Comment: Co-occurrence of proteins of two families
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Recent Replies
Answer: GCTA make GRM error contains illegal chr number by X.Y.Zebby • 0
Thank you for your help. I did that. > gcta64 --bfile r --autosome-num 29 --make-grm --out r I used the above code for makin…
Comment: FeatureCounts Number of Reads by santos48 ▴ 30
4000 fastq files
Comment: FeatureCounts Number of Reads by ATpoint 50k
> I have over 4000 human Rna-seq data reading by nanopore Minion What does that mean? You have 4000 files, or samples? Please explain.
Comment: Co-occurrence of proteins of two families by Dunois ▴ 1000
Also I really, really recommend NOT using `BLAST`. If these are all protein sequences, please use `DIAMOND`. If you're using nucleotide seq…
Comment: Co-occurrence of proteins of two families by Vladimir Leshuk ▴ 10
Thanks!!!!
Comment: Co-occurrence of proteins of two families by Vladimir Leshuk ▴ 10
Thanks!!!!!
Comment: Co-occurrence of proteins of two families by Dunois ▴ 1000
This not something you'd be able to do with the web-based `BLAST` interface. You will have to run things locally. And you'll need to do som…
Comment: Problem with this error: EXITING because of INPUT ERROR: the file format of the by foxiw • 0
It says that its gzip compressed data, so obviously it wasn't gunzipped properly! Thanks. How would I go about doing it properly then? Last…
Comment: Dual RNA-seq differential gene expression analysis by ATpoint 50k
Hello, I think at this point it is hardly possible to give specific advise. Try to be more focused, e.g. by showing some code. Right now we…
Comment: Plink 1.9 "File read failure" error when merging with --bmerge by chrchang523 8.1k
Can you post a set of files I can use to replicate what you’re seeing?
Comment: high duplication events in shotgun metagenomics by Mensur Dlakic ★ 11k
I will add that "throwing away" the reads will feel wrong to most people, so you may like to assemble once with all the data just so you ha…
Answer: high duplication events in shotgun metagenomics by Mensur Dlakic ★ 11k
I think you have such a high duplication rate precisely because your sample is of low diversity. The most abundant species probably ends up…
Comment: How to get number of characters (nucleotides) in fasta file by shenwei356 5.9k
Just use [seqkit stats](https://bioinf.shenwei.me/seqkit/usage/#stats) ```` seqkit stats *.faa file format type num_…
Answer: Plink 1.9 "File read failure" error when merging with --bmerge by okiedokie1208 • 0
same problem here
Comment: Compare gene coverage across group o samples by seidel 7.9k
I'll just ask - why would you think the distributions would be vastly different, simply based on the source molecule type? Especially after…
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