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405 results • Page 4 of 9
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17
votes
14
replies
1.9k
views
10 follow
Forum: What would be the trend in next few years in NGS era?
NGS sequencing
updated 11 months ago by 43k • written 5.5 years ago by ▴ 800
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 12 months ago by 43k • written 3.4 years ago by 8.7k
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
7
votes
4
replies
1.9k
views
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy
updated 11 months ago by 43k • written 5.6 years ago by • 0
1
vote
8
replies
1.9k
views
Forum: Statistics graduate wants to do some bioinformatics analysis
next-gen R statistics
updated 12 months ago by 43k • written 6.6 years ago by • 0
7
votes
7
replies
1.9k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 4 weeks ago by ★ 2.5k • written 4 weeks ago by • 0
3
votes
4
replies
1.9k
views
Forum: Recommendation for applied bioinformatics labs focusing on cancer biology
cancer-genomics
updated 11 months ago by 43k • written 5.7 years ago by ▴ 100
0
votes
3
replies
1.9k
views
Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO EGA
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
18
votes
16
replies
1.9k
views
Forum: Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene-prioritization
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
8
votes
4
replies
1.8k
views
Forum: Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by 43k • written 6.1 years ago by ▴ 40
8
votes
11
replies
1.8k
views
Forum: What makes a good bionformatics prediction service from the point of user experience?
server prediction-service
updated 12 months ago by 43k • written 6.6 years ago by ▴ 40
1
vote
4
replies
1.8k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 11 months ago by 43k • written 5.4 years ago by ▴ 120
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 12 months ago by 43k • written 6.4 years ago by 8.5k
21
votes
18
replies
1.8k
views
Forum: Is it safe to keep our data in github
github
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 10
9
votes
10
replies
1.7k
views
Forum: Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences data-analysis
updated 11 months ago by 43k • written 6.1 years ago by ★ 1.3k
10
votes
10
replies
1.7k
views
Forum: Doctor looking fertility for a collaborator for text mining on pubmed
text-mining fertility pubmed
updated 12 months ago by 43k • written 6.5 years ago by • 0
6
votes
3
replies
1.7k
views
Forum: lincRNA analysis pipeline and relevant database
lncRNA
updated 11 months ago by 43k • written 5.6 years ago by ★ 9.4k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
6
votes
5
replies
1.7k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 12 months ago by 43k • written 3.4 years ago by ▴ 330
2
votes
8
replies
1.7k
views
7 follow
Forum: Which tools do you miss?
software
updated 11 months ago by 43k • written 3.8 years ago by ▴ 110
11
votes
8
replies
1.7k
views
Forum: Bioinformatics cores pricing model
pricing-models core Bioinformatics-services
updated 11 months ago by 43k • written 5.2 years ago by ▴ 160
1
vote
9
replies
1.7k
views
Forum: Care to speculate? Are Protein Fragments or Entire Protein Sequences useful when classifying via Machine Learning techniques
protein Machine-Learning classification
updated 11 months ago by 43k • written 5.3 years ago by ▴ 80
3
votes
5
replies
1.7k
views
Forum: How do you use BLAST?
blat sequence-searching blast
updated 11 months ago by 43k • written 6.0 years ago by 23k
1
vote
1
reply
1.7k
views
Forum: Free Bioinformatics Training Resources (for non-bioinformaticians)
RNA-Seq
updated 11 months ago by 43k • written 5.0 years ago by ▴ 340
26
votes
8
replies
1.7k
views
7 follow
Forum: Reasons to refuse to give support
design rna-seq statistics
updated 11 months ago by 43k • written 5.5 years ago by 8.3k
3
votes
3
replies
1.6k
views
Forum: Designing RNA-seq data analysis pipeline
RNA-seq sra ngs
updated 12 months ago by 43k • written 6.5 years ago by ▴ 510
1
vote
7
replies
1.6k
views
Forum: Best online certificates / masters for Bioinformatics
learning certification courses online-training
updated 11 months ago by 43k • written 4.0 years ago by • 0
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
12
votes
4
replies
1.6k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 11 months ago by 43k • written 4.7 years ago by • 0
19
votes
10
replies
1.6k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 840
11
votes
6
replies
1.6k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 11 months ago by 43k • written 5.6 years ago by ▴ 760
4
votes
7
replies
1.5k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.4k
1
vote
5
replies
1.5k
views
Forum: College Grad looking for research assistant position in computational biology/ bioinformatics
career
updated 11 months ago by 43k • written 6.2 years ago by • 0
0
votes
0
replies
1.5k
views
Forum: Nowadays Classification problems in bioinformatics/chemoinformatics
machine-learning
updated 12 months ago by 43k • written 6.3 years ago by • 0
11
votes
5
replies
1.5k
views
Forum: What bioinformatic training?
training RNA-Seq illumina
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
0
votes
3
replies
1.5k
views
Forum: Bioinformatics projects: Where to apply?
next-gen sequence assembly alignment
updated 12 months ago by 43k • written 6.3 years ago by ▴ 530
2
votes
5
replies
1.5k
views
Forum: Looking for co-author with Bioinformatics background for paper using Machine Learning in Biology
neural-networks lncRNA RNN FEELnc
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
23
votes
18
replies
1.5k
views
Forum: Versioning of Blast DB and Reproducible Research
database blast reproducible-research
updated 11 months ago by 43k • written 4.0 years ago by ▴ 60
2
votes
5
replies
1.5k
views
Forum: transfer from computations to experiments?
postdoc
updated 12 months ago by 43k • written 6.3 years ago by ▴ 10
9
votes
6
replies
1.5k
views
Forum: How to start my career in Bioinformatics
career
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
2
votes
8
replies
1.5k
views
Forum: Learning community for newbies
python
updated 11 months ago by 43k • written 6.1 years ago by • 0
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 43k • written 4.6 years ago by ▴ 110
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
2
votes
7
replies
1.5k
views
Forum: Theory v Reality
protein DNA polymorphism variation
updated 11 months ago by 43k • written 6.1 years ago by • 0
405 results • Page 4 of 9
Recent Votes
Answer: DESeq2 error
Answer: Using ggplotly in R
Comment: How to calculate coverage of Nanopore long read data?
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
Answer: Cluster sub-set analysis using Seurat
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Recent Replies
Comment: How to extract cells of different species after mapping with combined genome? by GenoMax 142k
You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
Comment: bbmerge (bbmap) ~ error with insert size file output by GenoMax 142k
It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
Comment: bbmerge (bbmap) ~ error with insert size file output by chrisk • 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output by chrisk • 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation by Chen • 0
that's helpful, thanks :)
Comment: bbmerge (bbmap) ~ error with insert size file output by Brian Bushnell 20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Comment: Annotating file using bcftools by kl ▴ 10
Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Comment: Filtering VCF files based on VAF giving incorrect results by Arton ▴ 10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
Answer: Calculate allelic frequency from VEP output vcf file by ramiro.barrantes • 0
Found the answer here!! https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic Although this leads to a str…
Comment: Using VEP annotation output as the input for a second VEP annotation by Ram 43k
That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
Answer: In one PCA plot, can I calculate the percentage of different factors that contri by marco.barr ▴ 120
Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
Comment: Filtering VCF files based on VAF giving incorrect results by Pierre Lindenbaum 161k
> Do you think my commands were correct? I'm not familiar enough with this bcftools syntax. but what if there is no AD, what if both…
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas by Ash ▴ 10
I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too. …
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by swbarnes2 14k
Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
Comment: Doubt about the process of annotation, detection, identification and classificat by MarcosCosta • 0
Thank you very much, you've helped me a lot. Could you suggest a book or article that offers a complete explanation of these processes?
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