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1,000 results • Page 6 of 20
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13
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8
replies
1.8k
views
Forum: Starting a collective twitter account "Bioinformatician Underhood"
sci-comm
updated 2.9 years ago by 44k • written 3.0 years ago by ★ 2.9k
2
votes
2
replies
862
views
Forum: https://biostar.slack.com account
ngs
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 30
6
votes
12
replies
14k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 14 months ago by 44k • written 7.6 years ago by ▴ 20
0
votes
2
replies
798
views
Forum: Phylogenomic study: suggestions and tips
evolution species genus phylogenomic phylogenetics
3.1 years ago by tiagobellintani ▴ 40
0
votes
0
replies
451
views
Forum: How is is is xxx?
sum-of-airs
3.0 years ago by aa • 0
290
votes
55
replies
16k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 15 months ago by 44k • written 11.0 years ago by 10k
14
votes
14
replies
2.7k
views
7 follow
Forum: Bioinformatics startup market analysis
startup
written 3.1 years ago by ▴ 30
17
votes
21
replies
3.5k
views
8 follow
Forum: bioinformatics thesis
thesis
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 40
0
votes
0
replies
729
views
Forum: CADD Error in EXOMISER
exomiser cadd
3.1 years ago by shwetan • 0
3
votes
1
reply
741
views
Forum: Interested in benchmarks? Please take our survey!
benchmarking
3.1 years ago by Jeremy Leipzig 22k
2
votes
2
replies
736
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 3.1 years ago by 88k • written 3.1 years ago by ▴ 20
18
votes
9
replies
2.1k
views
8 follow
Forum: Future of Microarrays
Microarrays
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 10
8
votes
8
replies
3.1k
views
6 follow
Forum: R - A bioinformatic analysis programming language for NGS
NGS R
updated 2.9 years ago by 44k • written 3.1 years ago by ▴ 420
15
votes
7
replies
1.6k
views
6 follow
Forum: What to put in my Github
Github
updated 3.1 years ago by ★ 3.2k • written 3.1 years ago by ▴ 20
11
votes
6
replies
1.5k
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
3.1 years ago by tiagobellintani ▴ 40
2
votes
13
replies
2.7k
views
8 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 3.1 years ago by 44k • written 3.1 years ago by ▴ 350
45
votes
23
replies
6.4k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat slack
updated 15 months ago by 44k • written 6.2 years ago by 104k
20
votes
8
replies
1.9k
views
9 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 3.1 years ago by 14k • written 3.2 years ago by 22k
4
votes
2
replies
1.6k
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 3.1 years ago by 142k • written 3.1 years ago by ▴ 750
1
vote
1
reply
719
views
Forum: Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 3.2 years ago by 100k • written 3.2 years ago by ▴ 420
61
votes
16
replies
8.2k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 16 months ago by ★ 1.3k • written 3.6 years ago by 8.5k
1
vote
0
replies
664
views
Forum: Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
3.1 years ago by Novogene ▴ 420
0
votes
1
reply
701
views
Forum: Apache Spark on AWS
apachespark
updated 3.2 years ago by 22k • written 3.2 years ago by ★ 1.4k
9
votes
5
replies
2.3k
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome
updated 14 months ago by 44k • written 3.2 years ago by ▴ 10
50
votes
20
replies
6.1k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 14 months ago by 44k • written 8.2 years ago by ★ 1.1k
3
votes
2
replies
1.4k
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist machine-learning
updated 14 months ago by 44k • written 3.2 years ago by • 0
3
votes
5
replies
1.2k
views
Forum: Hide Emails from Guests
meta biostars
updated 14 months ago by 44k • written 3.5 years ago by ▴ 820
0
votes
0
replies
661
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq sequencing R
updated 14 months ago by 44k • written 3.2 years ago by ▴ 60
28
votes
7
replies
2.0k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 14 months ago by 44k • written 3.2 years ago by ▴ 250
1
vote
0
replies
617
views
Forum: Determining Heteroplasmy per sample
heteroplasmy bcftools
updated 14 months ago by 44k • written 3.2 years ago by ▴ 10
4
votes
4
replies
868
views
Forum: Looking for a CS PhD Program + tips
PhD
updated 14 months ago by 44k • written 3.2 years ago by • 0
29
votes
4
replies
7.9k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 14 months ago by 44k • written 3.2 years ago by ▴ 240
6
votes
4
replies
4.7k
views
Forum: Chip-Seq Data Analysis
chip-seq
updated 15 months ago by 44k • written 12.0 years ago by ★ 1.4k
130
votes
44
replies
34k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 14 months ago by 44k • written 7.7 years ago by ★ 1.0k
2
votes
0
replies
675
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
courses
updated 14 months ago by 44k • written 3.2 years ago by ▴ 20
20
votes
4
replies
1.8k
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
papers survey SNP
updated 15 months ago by 44k • written 3.2 years ago by ★ 1.4k
1
vote
0
replies
743
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 14 months ago by 44k • written 3.2 years ago by 23k
0
votes
1
reply
736
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 14 months ago by 44k • written 3.2 years ago by ★ 1.1k
13
votes
3
replies
6.5k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd
updated 15 months ago by 44k • written 12.0 years ago by 54k
16
votes
11
replies
1.7k
views
10 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education
updated 14 months ago by 44k • written 3.3 years ago by ▴ 40
1
vote
4
replies
965
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP
updated 14 months ago by 44k • written 3.2 years ago by ▴ 20
1
vote
4
replies
1.1k
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis
updated 14 months ago by 44k • written 3.2 years ago by • 0
4
votes
6
replies
1.1k
views
Forum: What are some areas of bioinformatics that are overdone?
bioinformatics
updated 14 months ago by 44k • written 3.2 years ago by 22k
2
votes
5
replies
885
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R
updated 14 months ago by 44k • written 3.3 years ago by ★ 3.5k
6
votes
5
replies
1.7k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 14 months ago by 44k • written 3.3 years ago by ▴ 70
40
votes
24
replies
4.0k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 14 months ago by 44k • written 3.3 years ago by ▴ 100
2
votes
3
replies
2.3k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 14 months ago by 44k • written 3.8 years ago by ★ 1.5k
0
votes
0
replies
586
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq
updated 14 months ago by 44k • written 3.3 years ago by • 0
57
votes
43
replies
16k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 14 months ago by 44k • written 5.3 years ago by 11k
23
votes
7
replies
1.6k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 14 months ago by 44k • written 3.3 years ago by ▴ 60
1,000 results • Page 6 of 20
Recent Votes
Comment: log2 fold change in RNA-seq analysis
Comment: log2 fold change in RNA-seq analysis
Answer: Ideal PC configurations and operating system for bioinformatics laboratory
correct way of analyzing cell proportions in singlecell data
Comment: How to interpret this plotMDS of three disease clusters?
gseGO: no term enriched under specific pvalueCutoff
Answer: Error with BiocParallel. No barcodes files found
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Teacher to dsull ★ 6.1k
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Recent Replies
Answer: Z score by Akash D ▴ 50
I made this. Z scored on log2FC? will anyone support me on this? 3 groups A,B,C
Comment: log2 fold change in RNA-seq analysis by i.sudbery 19k
There is no such thing as a fold change of -2. Fold change is expression_in_condition_A/expresssion_in_condition_B as expression is a…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
DE with 100s of samples (particulalry if your experiemental design is more complex than 2 condition DE) can stretch consumer grade hardware…
Comment: Error with BiocParallel. No barcodes files found by NTerway • 0
Thank you for your help! I will try this out. I am trying to implement a collaborator's pipeline on my data and they only use SCE, scran an…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Once you have the counts any n is possible on a regular analysis-grade laptop or workstation. Even hundreds of samples. It's really the pre…
Comment: Error with BiocParallel. No barcodes files found by ATpoint 82k
You just tell the function to remove the prefix for you. Not on the actual file. Then you can add this information to the SCE, like `sce$da…
Comment: log2 fold change in RNA-seq analysis by May Ling • 0
Thank you for your response. I apologize if my understanding is incomplete. I would like to ask: if I have a fold change of -2, how can I c…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
Yeah, a standard 3x3 bulk experiement is very analysable on pretty much most good consumer laptops these days.
Comment: Error with BiocParallel. No barcodes files found by NTerway • 0
Thanks for the explanation! If I remove the prefix (GSM3972009_69_) then I will lose the sample annotation and cannot track them. I am more…
Comment: Unexpected read length from NGS by ATpoint 82k
Seconding this. Just ask them.
Answer: Error with BiocParallel. No barcodes files found by ATpoint 82k
The function assumes simply barcodes.tsv(.gz), genes.tsv(.gz) and matrix.mtx(.gz), without additional pre- or suffixes by default. You can …
Comment: Free AI for R programming by GenoMax 142k
Try: https://ai.tinybio.cloud/
Comment: How to interpret this plotMDS of three disease clusters? by ATpoint 82k
arrayWeights is imo always a good idea with human (or generally large) cohorts. What you can also do is to use something like sva to estima…
Comment: Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Po by GenoMax 142k
Not what you want to hear but it is possible that the Ab data is not good quality as the cellranger message says (assuming everything ran p…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by ATpoint 82k
Bulk RNA-seq is way less intensive in every regard than single-cell. Whatever you buy, be sure it's upgradable, meaning, no Mac :)
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