Limit : all time
all time today this week this month this year
1,000 results • Page 1 of 20
Sort: Votes
Rank Views Votes Replies
1.2k
votes
206
replies
54k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 6 months ago by ★ 1.3k • written 12.7 years ago by 22k
772
votes
164
replies
129k
views
107 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 8 weeks ago by 2.3k • written 7.0 years ago by 99k
361
votes
81
replies
141k
views
34 follow
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel next-gen ngs
7 months ago by ole.tange ★ 4.4k
361
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 6 weeks ago by 41k • written 13.8 years ago by 99k
328
votes
54
replies
61k
views
45 follow
What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
genome visualization
updated 24 days ago by 41k • written 13.7 years ago by 24k
328
votes
92
replies
230k
views
58 follow
Tools To Calculate Average Coverage For A Bam File?
coverage bam sequencing
updated 4 months ago by ▴ 190 • written 12.8 years ago by 4.9k
307
votes
65
replies
21k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
13.1 years ago by Giovanni M Dall'Olio 28k
298
votes
122
replies
29k
views
29 follow
Mean Length Of Fasta Sequences
code fasta sequence codegolf
updated 12 weeks ago by ▴ 270 • written 13.4 years ago by 11k
295
votes
27
replies
44k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 16 months ago by 41k • written 7.8 years ago by ★ 2.4k
290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 9 months ago by 41k • written 10.6 years ago by 10k
288
votes
33
replies
102k
views
25 follow
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates
updated 9 months ago by 41k • written 10.1 years ago by 20k
286
votes
64
replies
19k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 14 months ago by 86k • written 12.7 years ago by 22k
282
votes
39
replies
177k
views
29 follow
Tutorial: How to download raw sequence data from GEO/SRA
fastq SRA bam GEO
updated 8 months ago by 41k • written 9.3 years ago by 20k
279
votes
69
replies
19k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 9 months ago by 41k • written 12.3 years ago by ▴ 160
275
votes
29
replies
272k
views
25 follow
How To Filter Mapped Reads With Samtools
samtools
updated 12 months ago by 41k • written 11.1 years ago by ▴ 630
262
votes
48
replies
22k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 9 months ago by ★ 1.0k • written 8.6 years ago by ★ 4.2k
251
votes
36
replies
32k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 8 months ago by 41k • written 13.6 years ago by 158k
244
votes
36
replies
8.9k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 7 months ago by 41k • written 7.6 years ago by ★ 9.3k
238
votes
176
replies
90k
views
73 follow
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq Survival TCGA
updated 6 months ago by 41k • written 8.3 years ago by ★ 4.7k
235
votes
45
replies
71k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen sequencing illumina exome human
updated 12.5 years ago by ▴ 50 • written 13.5 years ago by 4.9k
231
votes
38
replies
142k
views
29 follow
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
ensembl genome-coordinates liftover
updated 5 months ago by 41k • written 10.8 years ago by 19k
226
votes
39
replies
286k
views
33 follow
Gene Id Conversion Tool
david
updated 6 weeks ago by 41k • written 14.1 years ago by ▴ 620
206
votes
58
replies
40k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 9 months ago by 41k • written 10.5 years ago by 9.7k
203
votes
41
replies
24k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 9 months ago by 41k • written 9.0 years ago by ★ 5.2k
198
votes
21
replies
174k
views
12 follow
Forward And Reverse Strand Conventions
sequence strand
updated 12 months ago by 99k • written 13.1 years ago by ★ 2.8k
197
votes
27
replies
33k
views
20 follow
Forum: Bioinformatics Cartoon
bioinformatics
updated 4 months ago by 41k • written 11.9 years ago by ★ 2.3k
196
votes
44
replies
70k
views
33 follow
Tutorial: Analysing Microarray Data In Bioconductor
microarray-analysis bioconductor
updated 10 months ago by 41k • written 11.2 years ago by 20k
188
votes
50
replies
71k
views
41 follow
How To Remove The Same Sequences In The Fasta Files?
fasta sequence duplicates
updated 14 months ago by 41k • written 13.1 years ago by ▴ 340
188
votes
47
replies
2.1k
views
16 follow
Job: Bioinformatics freelancers needed
freelancer
updated 7 months ago by 41k • written 7.6 years ago by ▴ 190
185
votes
43
replies
81k
views
29 follow
Drawing Chromosome Ideograms With Data
ideogram visualization chromosome
updated 24 days ago by 41k • written 13.7 years ago by ★ 1.6k
185
votes
45
replies
31k
views
27 follow
How To Organize A Pipeline Of Small Scripts Together?
pipeline general
updated 6 weeks ago by 41k • written 13.8 years ago by 28k
179
votes
51
replies
16k
views
26 follow
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen sequencing galaxy
updated 10.4 years ago by ▴ 600 • written 13.1 years ago by 158k
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
12 days ago by Istvan Albert 99k
173
votes
30
replies
91k
views
17 follow
What Is The Best Method To Find Orthologous Genes Of A Species?
orthologues
updated 22 months ago by 41k • written 12.6 years ago by ▴ 610
172
votes
34
replies
25k
views
29 follow
Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
r books bioconductor
updated 24 days ago by 41k • written 13.7 years ago by 53k
171
votes
26
replies
7.5k
views
12 follow
How Do You Acknowledge Biostar And Its Contributors In Your Research Output?
meta biostars
updated 9 months ago by 41k • written 12.8 years ago by 3.2k
170
votes
41
replies
93k
views
27 follow
Multiline Fasta To Single Line Fasta
fasta
updated 10 weeks ago by 41k • written 12.5 years ago by ▴ 250
164
votes
70
replies
58k
views
34 follow
How To Efficiently Parse A Huge Fastq File?
next-gen sequencing fastq parsing
updated 11.9 years ago by ▴ 430 • written 12.4 years ago by ★ 1.8k
164
votes
52
replies
124k
views
28 follow
Fastq Convert To Fasta
perl
10.1 years ago by biolab ★ 1.4k
163
votes
8
replies
170k
views
Generate vcf.gz file and its index file vcf.gz.tbi
vcf tabix
updated 16 months ago by 41k • written 11.0 years ago by ▴ 450
162
votes
64
replies
82k
views
39 follow
Selecting Random Pairs From Fastq?
random fastq illumina sequence
updated 10 weeks ago by ▴ 780 • written 12.7 years ago by 4.1k
161
votes
22
replies
17k
views
19 follow
Forum: Advice For Newcomers To The Bioinformatics Field
advice career
updated 12 months ago by 41k • written 10.4 years ago by 9.7k
160
votes
19
replies
39k
views
16 follow
Why Does Rna-Seq Read Count Fit Poisson Distribution?
rna-seq modeling
updated 23 months ago by 41k • written 10.1 years ago by ▴ 730
157
votes
24
replies
61k
views
19 follow
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
alternative-splicing splicing rna-seq
updated 5 months ago by 41k • written 10.8 years ago by 10k
155
votes
44
replies
31k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 17 months ago by 41k • written 9.9 years ago by ★ 2.1k
154
votes
17
replies
29k
views
13 follow
What Are The Big Questions That Bioinformatics And Computational Biology Will Be Answering In The Next Few Years?
updated 17 months ago by 41k • written 11.9 years ago by 26k
153
votes
27
replies
10k
views
21 follow
The Best Question To Ask In A Bioinformatics Seminar
subjective
updated 12.9 years ago by ★ 1.1k • written 13.0 years ago by 28k
153
votes
32
replies
7.9k
views
23 follow
Picking A Programming Language And Where To Begin
programming next-gen sequencing c subjective
updated 11.8 years ago by ▴ 60 • written 12.3 years ago by ★ 2.8k
151
votes
39
replies
24k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 9 months ago by 41k • written 10.9 years ago by 3.0k
151
votes
42
replies
178k
views
22 follow
How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
heatmap r
updated 18 months ago by 41k • written 11.7 years ago by 20k
1,000 results • Page 1 of 20
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
Answer: GO categorization
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Recent Locations • All
United States, just now
Australia, 1 minute ago
Spain, 3 minutes ago
South Korea, 9 minutes ago
United States, 11 minutes ago
Turkey, 15 minutes ago
United States, 18 minutes ago
Recent Awards • All
Popular Question to beausoleilmo ▴ 560
Commentator to Brian Bushnell 19k
Popular Question to Gama313 ▴ 120
Popular Question to nanodano ▴ 30
Popular Question to shome ▴ 10
Popular Question to Malachi Griffith 19k
Scholar to jared.andrews07 ★ 16k
Recent Replies
Comment: Using metagenome assembly and binning to identify and mitigate contamination in by Brian Bushnell 19k
It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
Answer: GO categorization by geneontologyhelp ▴ 270
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them? by blackadder ▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements? by cmdcolin ★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations by Jordan M Eizenga ▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ? by Jordan M Eizenga ▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ? by Brian Bushnell 19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data by Tm ★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them? by Brian Bushnell 19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download by cmdcolin ★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization by m.habib • 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by jv ★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands? by Malachi Griffith 19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ? by Trivas ★ 1.5k
You added a position dodge on your boxplot but not on your points.
Comment: How Can I move the scattered dots more closer into the center of box ? by ATpoint 78k
Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
Traffic: 1471 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6