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Limit : this year
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1,000 results • Page
7 of 20
Sort: Votes
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Views
Votes
Replies
22
votes
15
replies
9.0k
views
11 follow
Forum:
RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
ivanarg2
▴ 80
22
votes
20
replies
4.9k
views
Tool:
elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
sam
bam
bqsr
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Charlotte.Herzeel
▴ 150
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 11 months ago by
Ram
43k • written 4.4 years ago by
c_u
▴ 520
22
votes
11
replies
3.4k
views
Forum:
ExpressionSet in the age of tidyverse
expressionset
R
bioconductor
updated 11 months ago by
Ram
43k • written 6.0 years ago by
igor
13k
22
votes
14
replies
28k
views
7 follow
removing batch effects using ComBat and SVA
SVA
ComBat
R
Batch-effect
updated 5 weeks ago by
Ram
43k • written 7.9 years ago by
LJ
▴ 280
22
votes
8
replies
8.7k
views
7 follow
Gene Expression: Clustering Co-Expressed Genes
gene
clustering
microarray
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Eric Normandeau
11k
22
votes
7
replies
25k
views
What Does The "N50" Mean?
assembly
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Bioch'Ti
★ 1.1k
22
votes
16
replies
12k
views
6 follow
List All The Tools Or Write A Script To Validate That A Sequence Only Contains Letters From A Given Alphabet
dna
sequence
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
22
votes
21
replies
4.9k
views
7 follow
Quick Programming Challenge: Calculate Common And Unique Regions From A List Of Chromosome Segments
programming
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
22
votes
17
replies
4.0k
views
Tool:
epic: new ChIP-Seq caller based on the SICER algorithm
ChIP-Seq
updated 10 months ago by
Ram
43k • written 8.1 years ago by
endrebak
▴ 960
22
votes
10
replies
8.8k
views
9 follow
fastq compression tools of choice
fastq
compression
updated 12 weeks ago by
Xi
• 0 • written 8.7 years ago by
Richard
▴ 590
22
votes
14
replies
25k
views
11 follow
searching reads with a certain sequence in fastq file
grep
fastq
updated 10 months ago by
elina2410
• 0 • written 9.1 years ago by
sumithrasank75
▴ 140
21
votes
12
replies
3.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
4 months ago by
Ram
43k
21
votes
7
replies
12k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
21
votes
6
replies
16k
views
survfit(Surv()) P-value interpretation for 3 survival curves?
survfit
Surv
survival curves
R
updated 7 weeks ago by
marshelma
• 0 • written 4.6 years ago by
JJDollar
▴ 130
21
votes
18
replies
1.8k
views
Forum:
Is it safe to keep our data in github
github
updated 11 months ago by
Ram
43k • written 4.0 years ago by
rprog008
▴ 70
21
votes
20
replies
9.5k
views
11 follow
Laptops for bioinformatics
hardware
Laptops
updated 10 months ago by
LauferVA
4.2k • written 18 months ago by
tsomakiank
▴ 40
21
votes
7
replies
16k
views
6 follow
GFA to Fasta file
sequence
updated 4 months ago by
Adam Taranto
▴ 40 • written 8.4 years ago by
marcela.uliano
▴ 90
21
votes
9
replies
23k
views
9 follow
Building Snpeff Database
vcftools
snp
gatk
updated 8 months ago by
Ram
43k • written 11.8 years ago by
bioinfo
▴ 830
21
votes
15
replies
8.9k
views
10 follow
To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm
rna-seq
updated 10 months ago by
shelkmike
★ 1.2k • written 10.2 years ago by
liupfskygre
▴ 210
21
votes
12
replies
8.8k
views
10 follow
How To Find A 28Bp 'Primer' Sequence In A Genome?
sequence
genome
primer
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Dan
▴ 530
21
votes
26
replies
9.7k
views
11 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 8 weeks ago by
Yao
▴ 30 • written 4.4 years ago by
Juke34
8.6k
21
votes
13
replies
3.3k
views
11 follow
Biology Database Project
programming
dataset
updated 11 months ago by
bryan.smith4756
• 0 • written 12.3 years ago by
Mattyd
▴ 10
21
votes
11
replies
2.6k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
21
votes
11
replies
11k
views
Tool:
Segemehl: A Fast One-Stop-Shop Mapping Tool
mapping
next-gen
updated 10 months ago by
Ram
43k • written 11.6 years ago by
David Langenberger
11k
21
votes
10
replies
35k
views
6 follow
read depth using samtools
depth
samtools
updated 8 months ago by
Sachin
▴ 10 • written 5.4 years ago by
LimMo
▴ 30
21
votes
11
replies
2.0k
views
Forum:
Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
21
votes
14
replies
9.5k
views
Tool:
trackplot: Fast and minimal dependency standalone R script to generate IGV style locus tracks from bigWig files
visualization
igv
ChIP-Seq
R
bigwigs
updated 11 months ago by
Ram
43k • written 3.5 years ago by
poisonAlien
★ 3.2k
21
votes
8
replies
37k
views
8 follow
Merging/Concatenating Vcf Files
vcftools
snp
indel
updated 8 months ago by
Bioinformatics_NewComer
▴ 330 • written 11.7 years ago by
bioinfo
▴ 830
21
votes
15
replies
2.1k
views
9 follow
Forum:
Working abroad without a PhD
career
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Rox
★ 1.4k
21
votes
9
replies
13k
views
8 follow
List all available databases for ANNOVAR
annovar
updated 8 months ago by
yuanma0427
• 0 • written 7.9 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
21
votes
11
replies
17k
views
the problem with rpkm (and tpm)
RNA-Seq
next-gen
gene-expression
normalization
updated 10 months ago by
Chris
▴ 280 • written 9.6 years ago by
user123456
▴ 180
21
votes
13
replies
11k
views
10 follow
Tutorial:
Setting up Aspera Connect (ascp) on Linux and macOS
ascp
aspera
updated 6 months ago by
jude
• 0 • written 22 months ago by
ATpoint
82k
21
votes
13
replies
10k
views
8 follow
Blast Motif With Regular Expression ?
blast
motif
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Markus Krupp
▴ 80
20
votes
14
replies
5.0k
views
6 follow
Hardware Resources For Hpc In Bioinformatics
hpc
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Jarretinha
3.4k
20
votes
10
replies
17k
views
Could you please explain Fold change, % of change, and log2 fold change (L2FC) to a layment?
gene
RNA-Seq
next-gen
fold-change
updated 8 months ago by
Ram
43k • written 4.5 years ago by
WUSCHEL
▴ 760
20
votes
6
replies
4.9k
views
Some clarification on enrichment analyses and pathway analyses?
pathview
R
gene-enrichment
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.5 years ago by
kirannbishwa01
★ 1.6k
20
votes
23
replies
7.2k
views
6 follow
Tool:
EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
easeq
Windows
Visualization
ChIP-Seq
updated 10 months ago by
Ram
43k • written 8.1 years ago by
Mads Lerdrup
▴ 460
20
votes
10
replies
12k
views
Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
taxonomy
blast
pipeline
ncbi
updated 10 months ago by
Ram
43k • written 12.3 years ago by
Daniel
★ 4.0k
20
votes
10
replies
3.5k
views
Agile Programming For Bioinformaticians - Any Suggestions?
general
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
20
votes
7
replies
3.2k
views
k-mer counting into R using perfect hashing
k-mer
Rcpp
Cpp
hashing
R
updated 11 months ago by
Ram
43k • written 7.9 years ago by
Macherki M E
▴ 120
20
votes
5
replies
5.6k
views
Check Ancestry Relation Between Go Terms
gene
updated 10 months ago by
Ram
43k • written 13.1 years ago by
Michi
▴ 990
20
votes
24
replies
7.0k
views
6 follow
Forum:
Python or R
RNA-Seq
alignment
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Qingyang Xiao
▴ 160
20
votes
10
replies
9.3k
views
6 follow
Programatic Technique For Gene-Name/Id Conversion
python
conversion
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Will
4.5k
20
votes
11
replies
2.7k
views
7 follow
samtools sort operation very slow, bottle-neck is external hard drive?
samtools
BAM
updated 10 months ago by
Ram
43k • written 16 months ago by
blizard.wizard
▴ 20
20
votes
9
replies
3.1k
views
I Was Studying A Gene But It Disappeared In The Latest Ensembl Release. What Should I Do Now?
ensembl
gene-annotation
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
20
votes
26
replies
3.3k
views
Is there a command line tool that can take an alignment fasta and input and outputs an image?
alignment
fasta
image
updated 9 months ago by
Joe
21k • written 4.9 years ago by
Joel Wallenius
▴ 210
20
votes
10
replies
14k
views
8 follow
Test Whether The Variance In A Group Is Lower Than In Another
statistics
r
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
20
votes
5
replies
3.4k
views
How Do I Import Data From A Torrent Into A Bioperl, R, Bioclipse, Or Taverna Application?
R
bioperl
torrent
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Egon Willighagen
5.4k
20
votes
17
replies
3.3k
views
How to add "transcript" feature to a gtf file?
gtf
updated 10 months ago by
1769mkc
★ 1.2k • written 3.3 years ago by
pomodoro_sinensis
▴ 110
1,000 results • Page
7 of 20
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Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
Answer: Cluster sub-set analysis using Seurat
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Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation
by
Chen
• 0
that's helpful, thanks :)
Comment: bbmerge (bbmap) ~ error with insert size file output
by
Brian Bushnell
20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
Comment: Annotating file using bcftools
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kl
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Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
▴ 10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
Answer: Calculate allelic frequency from VEP output vcf file
by
ramiro.barrantes
• 0
Found the answer here!! https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic Although this leads to a str…
Comment: Using VEP annotation output as the input for a second VEP annotation
by
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43k
That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴ 120
Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
> Do you think my commands were correct? I'm not familiar enough with this bcftools syntax. but what if there is no AD, what if both…
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I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too. …
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Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
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MarcosCosta
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Thank you very much, you've helped me a lot. Could you suggest a book or article that offers a complete explanation of these processes?
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
▴ 10
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Add stats to boxplot in R
by
Ghada
• 0
Thanks. Thats work
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