1
vote
13
replies
12k
views
0
votes
1
reply
12k
views
0
votes
3
replies
12k
views
2
votes
13
replies
12k
views
8 follow
updated 5.7 years ago by
basucsmcri
•
0
•
written 6.6 years ago by
biostarsb
▴
30
3
votes
2
replies
12k
views
6.6 years ago by
jonessara770
▴
240
4
votes
9
replies
12k
views
0
votes
3
replies
11k
views
7
votes
9
replies
11k
views
updated 6.0 years ago by
Satyajeet Khare
★
1.6k
•
written 6.0 years ago by
SMILE
▴
170
8
votes
5
replies
11k
views
1
vote
13
replies
11k
views
7.7 years ago by
cacampbell
▴
50
0
votes
4
replies
11k
views
updated 8 months ago by
Ram
40k
•
written 8.3 years ago by
che.bellaj
•
0
3
votes
8
replies
11k
views
6 follow
4
votes
7
replies
11k
views
10.4 years ago by
jeansimon32
▴
170
2
votes
3
replies
11k
views
updated 8 months ago by
Ram
40k
•
written 8.3 years ago by
ashishchahl
•
0
3
votes
4
replies
11k
views
13
votes
6
replies
11k
views
6 follow
5.5 years ago by
lauren.wahyudi
▴
40
41
votes
55
replies
11k
views
6 follow
1
vote
2
replies
11k
views
6
votes
7
replies
11k
views
6.5 years ago by
abascalfederico
★
1.2k
2
votes
4
replies
11k
views
2
votes
8
replies
11k
views
11.6 years ago by
Nickengland
▴
130
3
votes
16
replies
11k
views
4
votes
14
replies
10k
views
3
votes
4
replies
10k
views
2
votes
0
replies
10k
views
updated 18 months ago by
Ram
40k
•
written 8.7 years ago by
c.v.oflynn
▴
100
3
votes
1
reply
10k
views
updated 13 months ago by
Ram
40k
•
written 8.0 years ago by
stevenlang123
▴
200
7
votes
8
replies
10k
views
5.9 years ago by
blur
▴
280
2
votes
1
reply
10k
views
3
votes
2
replies
10k
views
0
votes
1
reply
10k
views
updated 2.7 years ago by
dqq102829
•
0
•
written 3.7 years ago by
zhangdengwei
▴
210
11
votes
10
replies
10k
views
updated 21 months ago by
Ram
40k
•
written 9.1 years ago by
trakhtenberg
▴
160
1
vote
2
replies
10.0k
views
3
votes
9
replies
10.0k
views
0
votes
0
replies
9.9k
views
9.7 years ago by
jfertaj
▴
110
1
vote
1
reply
9.9k
views
2
votes
2
replies
9.9k
views
3
votes
6
replies
9.8k
views
6 follow
updated 16 months ago by
ibomsolomon
•
0
•
written 9.4 years ago by
Tohamy
▴
80
7
votes
9
replies
9.8k
views
1
vote
5
replies
9.8k
views
updated 3.6 years ago by
Karma
▴
310
•
written 9.8 years ago by
newDNASeqer
▴
750
0
votes
0
replies
9.8k
views
2
votes
16
replies
9.7k
views
updated 20 months ago by
Ram
40k
•
written 9.2 years ago by
BDK_compbio
▴
140
13
votes
22
replies
9.7k
views
updated 6.0 years ago by
Biostar
20
•
written 6.2 years ago by
lessismore
★
1.3k
2
votes
8
replies
9.6k
views
updated 5 months ago by
Ram
40k
•
written 5.4 years ago by
Nicolas Rosewick
10k
3
votes
10
replies
9.5k
views
3
votes
3
replies
9.4k
views
5.1 years ago by
tarek.mohamed
▴
350
3
votes
4
replies
9.4k
views
updated 6.0 years ago by
Ram
40k
•
written 6.0 years ago by
KVC_bioinfo
▴
590
0
votes
2
replies
9.4k
views
6
votes
3
replies
9.4k
views
updated 3.0 years ago by
joshua.theisen
▴
30
•
written 5.5 years ago by
makwana.kd
▴
50
0
votes
8
replies
9.3k
views
updated 12 weeks ago by
Ram
40k
•
written 6.2 years ago by
himanimalhotra89
•
0
5
votes
8
replies
9.3k
views
7 follow
Recent Votes
Recent Locations •
All
Australia, just now
South Korea, just now
Hong Kong, 1 minute ago
China, 11 minutes ago
South Korea, 13 minutes ago
United States, 13 minutes ago
Chile, 15 minutes ago
Recent Awards •
All
Popular Question to
jabaron.phd
•
0
Commentator to
ATpoint
76k
Popular Question to
Morgan S.
▴
80
Popular Question to
paria
▴
70
Popular Question to
marongiu.luigi
▴
690
Recent Replies
Comment: Salmon index not progressing
by
camillab.
▴
130
I opened tow terminals and one was the code to build a decoy-aware transcriptome and the other was building indexes (no decoy)
Comment: Adding a control sample to bulk RNA-seq
by
Chris
▴
180
Thank you for the explanation! So just want to confirm one control with replicate is totally useless even can't use as a reference?
Answer: DESeq2 analysis using two featureCounts generated from different studies
by
swbarnes2
13k
Comparing samples between labs is a bad idea. Better to generate gene lists from one study from one lab, and gene lists from another study…
Comment: Adding a control sample to bulk RNA-seq
by
swbarnes2
13k
If a sample wasn't prepared along side your treated samples, it is a different batch. If you had treated and controls in each of two diffe…
Comment: kallisto normalized TPM values without bootstraps
by
ATpoint
76k
You don't need sleuth. Typically these deconvolutions, or most downstream analysis, is done on the gene- rather than the transcript-level w…
Comment: Salmon index not progressing
by
ATpoint
76k
If the top $CPU column shows some values in the hundreds then it is doing something (actually when it's > 0%). So based on the screenshot i…
Comment: Salmon index not progressing
by
camillab.
▴
130
Thank you. Waiting it's not gonna hurt me, when should I stop hoping and give up is the question? do you know is there a way if I can see i…
Comment: Filtering VCF to divide with equal sizes
by
Ram
40k
A more efficient way would be to make a 2 column CSV file, one column with the count value and the other with the chr:start-end range, then…
Answer: Filtering VCF to divide with equal sizes
by
avelarbio46
▴
30
I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
Comment: Salmon index not progressing
by
ATpoint
76k
Just wait until it is finished. It's seems to be running. I just checked my logs and on our HPC with four cores such as process for a decoy…
Comment: Salmon index not progressing
by
GenoMax
134k
> 2 hrs trying to generate decoy-aware transcriptome for human. is this time normal?
It is probably normal considering resources you have…
Comment: Chromosome bias on RNA-Seq differential gene expression analysis
by
grant.hovhannisyan
★
2.5k
you expect to have aneuploidy only in the knockout?
Comment: STAR index not working
by
camillab.
▴
130
thank you! I am following GenoMax suggestion and I am trying with `salmon` but it is stuck as well. it's not making any progress.....
Comment: Scanning for ultra-hot topics in science via pubmed, or using other tools
by
LauferVA
3.7k
@genomax , thank you. this is a really great start.
i will likely use a python based approach, but other than that, i think ill proceed e…
Comment: OMA in AWS cloud
by
Ram
40k
> if it is possible.
Yes, most things are possible on AWS.
> I didn't find anything in the web.
I *highly* **highly** doubt that.
Traffic: 2033 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6