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421 results • Page 4 of 9
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0
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833
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Forum: Annotation for WGBS
next-gen
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
5
votes
5
replies
941
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 11 months ago by 43k • written 4.1 years ago by • 0
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 11 months ago by 43k • written 4.1 years ago by ▴ 10
7
votes
5
replies
956
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 43k • written 4.1 years ago by ▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum: Who qualify as a world class bioinformatician as seen in job ads
world-class bioinformatician qualification
updated 11 months ago by 43k • written 4.1 years ago by • 0
29
votes
18
replies
2.7k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
6
votes
5
replies
7.7k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
56
votes
19
replies
4.1k
views
9 follow
Forum: How to apply for a job
resume cover-letter application CV
updated 12 months ago by 43k • written 6.8 years ago by 23k
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.7k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
2
votes
0
replies
1.1k
views
Forum: How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry chromosome-painting ADMIXTURE
updated 11 months ago by 43k • written 4.3 years ago by 8.2k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 11 months ago by 43k • written 4.3 years ago by 13k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
7
votes
2
replies
793
views
Forum: How to follow a particular post on Biostars?
meta
updated 11 months ago by 43k • written 4.5 years ago by ★ 4.0k
7
votes
4
replies
1.5k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
2
votes
2
replies
748
views
Forum: Learning RNASeq Analysis using my own DATA that needs to be analyzed
assembly gene RNA-Seq alignment
updated 11 months ago by 43k • written 4.3 years ago by • 0
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
2
votes
2
replies
946
views
Forum: How can bench biologists transition to be bioinformatics scientist?
transition career biology
updated 11 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
542
views
Forum: Transmart/i2b2 versus PhenoMeNal
transmart PhenoMeNal
updated 11 months ago by 43k • written 4.4 years ago by • 0
2
votes
6
replies
1.0k
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 43k • written 4.4 years ago by ▴ 60
1
vote
8
replies
5.4k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
1
vote
0
replies
829
views
Forum: Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.9k
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
134
votes
65
replies
6.2k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 11 months ago by 43k • written 4.4 years ago by ▴ 880
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.4 years ago by 8.2k
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
6
votes
5
replies
960
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
12
votes
0
replies
2.0k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.3k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 months ago by 43k • written 4.5 years ago by ★ 5.1k
0
votes
0
replies
144
views
Forum: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
4
votes
0
replies
908
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 43k • written 4.6 years ago by 19k
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 11 months ago by 43k • written 4.6 years ago by ▴ 300
4
votes
3
replies
924
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by 43k • written 4.7 years ago by ★ 1.9k
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 43k • written 4.6 years ago by ▴ 110
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 11 months ago by 43k • written 4.6 years ago by ▴ 20
421 results • Page 4 of 9
Recent Votes
A: GC bias correction for Chip-SEQ
Comment: Help with IGV abbreviation
A: How to get read counts on transcript level using featurecounts?
Answer: Vcf file sorting
Answer: How to interpret infinite odds ratio?
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
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Recent Replies
Comment: Biomart issue, why so few 3'utrs? by GenoMax 142k
AFAIK "MANE" project is only for human protein-coding genes. One potential explanation. Out of the 2000 ID's only 125 may be MANE. https:…
Answer: Biomart issue, why so few 3'utrs? by i.sudbery 19k
The MANE-select transcripts are pairs of identically annotated transcripts in ReqSeq and Ensembl. The 3' UTR is the region where otherwise …
Comment: sci-RNA-seq by ATpoint 82k
Please understand that this impossibly can be answered without any code or plots, or details in general. "Hey my car does not start, it mak…
Comment: Biomart issue, why so few 3'utrs? by i.sudbery 19k
Which species is this?
Comment: How to access GWAVA software of data by GenoMax 142k
Please email the author (grsr at ebi.ac.uk) and let them know that the link above is not available.
Comment: CNVKIT - unable to produce scatter and diagram pdfs by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: Overlapping Ranges within Granges object by ATpoint 82k
There is no one-hit function in GenomicRanges, but you can stick something together using a combination of `findOverlaps` to first find ove…
Comment: Galaxy StringTie error by trkfs • 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio? by Lukas • 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
https://www.sanger.ac.uk/tool/gwava/
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by IdaHao0921 • 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object by Alex Reynolds 35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
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