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1,000 results • Page
4 of 20
Sort: replies
Rank
Views
Votes
Replies
13
votes
16
replies
6.7k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa
samtools
mpileup
4.9 years ago by
DNAngel
▴ 240
14
votes
16
replies
1.7k
views
Why are some mapped reads not mapped completely?
RNA-Seq
mapping
updated 3.1 years ago by
lieven.sterck
14k • written 3.1 years ago by
utsafar
▴ 80
16
votes
16
replies
2.9k
views
Using DESeq2 results for building a classifier
deseq2
RNA-Seq
differentially expressed genes
5.7 years ago by
bioinfo456
▴ 150
2
votes
16
replies
1.7k
views
I want to know is it a true method ?
vcf
SNP
realignment
5.7 years ago by
Siavash Salek Ardestani
▴ 20
7
votes
16
replies
2.5k
views
Insert size selection for RNASeq data: does it make sense?
RNA-Seq
sequencing
updated 8 months ago by
Ram
41k • written 6.1 years ago by
Matteo Schiavinato
★ 3.6k
0
votes
16
replies
2.3k
views
How to convert ncbi gff file to ensembl gff format
bcftools
gff
updated 8 months ago by
Ram
41k • written 15 months ago by
yoser4
▴ 10
0
votes
16
replies
3.0k
views
Problems with installation of Prodege decontamination software
genome
next-gen
sequencing
sequence
blast
updated 6.8 years ago by
Biostar
20 • written 6.9 years ago by
tans0307
• 0
5
votes
16
replies
2.1k
views
How to extract intron counts from total RNA Sequencing?
featurecounts
RNAseq
htseq
STAR
12 months ago by
barrypraveen
▴ 130
8
votes
16
replies
1.3k
views
what is the ideal normalistation methods for TCGA gene expression or DNA methylation dtasets?
gene
next-gen
3.9 years ago by
Chaimaa
▴ 260
7
votes
16
replies
19k
views
featureCounts: Low percentage of assigned fragments
RNA-Seq
rna-seq
7.3 years ago by
aggregatibacter
▴ 180
5
votes
16
replies
2.4k
views
a lot of OTUs wth no reference
16S
6.1 years ago by
agata88
▴ 860
3
votes
16
replies
3.2k
views
FastTree trifurcating Root node
alignment
FastTree
Phylogenetic Tree
4.9 years ago by
Moses
▴ 150
3
votes
16
replies
3.7k
views
GC content of 10x Genomics
fastqc
10x
GC content
updated 3.3 years ago by
Eugene A
▴ 170 • written 4.6 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
16
replies
1.8k
views
Why I see very high mapping percentage, Is this normal or anything wrong in generating libraries?
RNA-Seq
hisat2
samtools
mapping
updated 5.5 years ago by
Biostar
20 • written 5.6 years ago by
Vasu
▴ 740
0
votes
16
replies
3.5k
views
Gff to genbank - feature is missing
DNA
augustus
gff3
genbank
updated 6 months ago by
Ram
41k • written 5.5 years ago by
rororo
▴ 10
5
votes
16
replies
3.3k
views
Hisat2 aligner problem
RNA-Seq
ChIP-Seq
alignment
Assembly
software error
4.5 years ago by
ta_awwad
▴ 340
3
votes
16
replies
11k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 6 months ago by
Ram
41k • written 4.7 years ago by
Star
▴ 60
7
votes
16
replies
3.5k
views
cutting overrepresented sequences (recognized by fatsqc)
sequencing
genome-sequence
fastqc
genome
sequence
3.7 years ago by
Researcher
▴ 20
4
votes
16
replies
4.3k
views
Working with human database in Kraken
RNA-Seq
next-gen
genome
7.5 years ago by
Ron
★ 1.2k
1
vote
16
replies
6.4k
views
After sorting bam file not able to index ?
alignment
next-gen
updated 4.8 years ago by
Biostar
20 • written 4.9 years ago by
sunnykevin97
▴ 970
0
votes
16
replies
4.0k
views
Count read with summarizeOverlaps result 0 for all sample
RNA-Seq
updated 17 months ago by
Ram
41k • written 8.6 years ago by
bharata1803
▴ 550
2
votes
16
replies
9.8k
views
Tophat with Bowtie2 long index
tophat
bowtie
updated 23 months ago by
Ram
41k • written 9.4 years ago by
BDK_compbio
▴ 140
4
votes
15
replies
3.8k
views
Paired-read alignment length from BAM/SAM file
bam
sam
paired-read
alignment
6.5 years ago by
Soumitra Pal
▴ 10
5
votes
15
replies
1.5k
views
NGS Sequencing depths
next-gen
sequencing
gene
6.8 years ago by
sliproach
▴ 10
0
votes
15
replies
1.9k
views
Chromosome accession numbers correspond to which chromosome?
bam
chromosome
bed
13 months ago by
amy__
▴ 160
6
votes
15
replies
1.4k
views
The Best Cloud Solution For Genomics
cloud
data-sharing
genomics
workflow
updated 16 months ago by
Ram
41k • written 17 months ago by
davidmaimoun
▴ 50
1
vote
15
replies
3.4k
views
Install Lefse in Ubuntu 12
install
lefse
microbiome
5.4 years ago by
goh
▴ 10
6
votes
15
replies
2.4k
views
Why can't I reproduce the same heat map
ggplots
R
RNA-Seq
updated 5.3 years ago by
Biostar
20 • written 5.4 years ago by
Za
▴ 140
3
votes
15
replies
5.3k
views
Pairwise sequence alignment with Biojava?
sequence-alignment
biojava
java
updated 22 months ago by
Ram
41k • written 9.1 years ago by
Bioaln
▴ 360
2
votes
15
replies
4.0k
views
How to interpret reads mapped to genome from samtools flagstat vs TopHat align_summary.txt ?
RNA-Seq
7.6 years ago by
Vasu
▴ 740
3
votes
15
replies
2.0k
views
RNA Seq Analysis:Feature Counts are zero
RNA-Seq
feature counts
updated 3.5 years ago by
Biostar
20 • written 3.5 years ago by
Genomics
▴ 20
2
votes
15
replies
1.3k
views
How to call all the allele in samples
SNP
5.6 years ago by
Kritika
▴ 260
0
votes
15
replies
1.8k
views
compare two NCBI ftp tables
table
NCBI
updated 2.5 years ago by
Ram
41k • written 2.5 years ago by
Debut
▴ 20
5
votes
15
replies
1.9k
views
Sample contamination level over 30%
next-gen
6.2 years ago by
haiying.kong
▴ 360
0
votes
15
replies
3.0k
views
how to make a .bam file from fastQ for RNA-seq ion torrent with BBmap
RNA-Seq
6.1 years ago by
genya35
▴ 40
10
votes
15
replies
1.5k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
5 months ago by
Chris
▴ 230
6
votes
15
replies
2.9k
views
Why GSVA returns a matrix with fewer gene-sets?
microarray
GSVA
updated 23 months ago by
Christopher Walker
▴ 70 • written 5.7 years ago by
arronar
▴ 280
0
votes
15
replies
2.8k
views
SAMFormatException: Did not inflate expected amount error
WES
updated 2.1 years ago by
greekkey
▴ 20 • written 2.4 years ago by
smrutimayipanda
▴ 20
2
votes
15
replies
1.9k
views
to get each covariate with PC loading in PCA
RNA-seq
PCA
4.9 years ago by
Grace_G
▴ 20
7
votes
15
replies
6.2k
views
6 follow
blastn error - NCBI C++ Exception
assembly
blast
alignment
updated 20 months ago by
lieven.sterck
14k • written 2.7 years ago by
sunnykevin97
▴ 970
10
votes
15
replies
5.9k
views
DIAMOND blast imported into MEGAN6 has no taxonomic assignment
blast
MEGAN6
Taxonomy
DIAMOND
7.0 years ago by
Farbod
★ 3.4k
11
votes
15
replies
2.6k
views
How do I get the read counts for a specific exon
bam
exon
updated 5.7 years ago by
Ram
41k • written 5.7 years ago by
b10hazard
▴ 30
5
votes
15
replies
2.0k
views
Is this a valid analysis?
geo
rankprod
analysis
microarray
7.1 years ago by
randalljellis
▴ 90
10
votes
15
replies
5.8k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 8 months ago by
Ram
41k • written 5.2 years ago by
marongiu.luigi
▴ 690
1
vote
15
replies
5.0k
views
How to Extract Specific Region on Bam file
Nanopore
HG38
Rna-Seq
Genome
updated 2.5 years ago by
Kevin Blighe
86k • written 2.5 years ago by
santos48
▴ 40
1
vote
15
replies
3.5k
views
Fastx quality filter
next-gen
RNA-Seq
software error
sequencing
updated 7.0 years ago by
Ram
41k • written 7.0 years ago by
kriti.awasthi23
▴ 10
3
votes
15
replies
1.7k
views
Overlapping regions in a BED file
regions
BED
Sequence
exons
annotation
17 months ago by
Matej
• 0
1
vote
15
replies
1.3k
views
How to reduce my dataset in order to plot it?
correlation
igraph
updated 4.3 years ago by
Biostar
20 • written 4.5 years ago by
pablo
▴ 300
8
votes
15
replies
1.7k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.1 years ago by
guillaume.rbt
★ 1.0k
0
votes
15
replies
2.2k
views
pathway analysis tools for xenopus
pathways
omics
xenopus
updated 7.4 years ago by
EagleEye
7.5k • written 7.4 years ago by
mike
▴ 90
1,000 results • Page
4 of 20
Recent Votes
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Answer: Problematic fastq files...How can we trust them?
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Comment: Should I scale all genes in single cell Seurat?
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