updated 22 months ago by
Ram
44k
•
written 13.5 years ago by
Bioscientist
★
1.7k
51
votes
15
replies
71k
views
12 follow
38
votes
9
replies
71k
views
8 follow
51
votes
15
replies
71k
views
15 follow
updated 2.6 years ago by
Ram
44k
•
written 13.5 years ago by
Michael Petronio
▴
70
20
votes
15
replies
70k
views
12 follow
updated 11.2 years ago by
viv_bio
▴
50
•
written 14.2 years ago by
Studentguy
▴
70
2
votes
1
reply
69k
views
24
votes
23
replies
69k
views
7 follow
updated 3.0 years ago by
Ram
44k
•
written 11.5 years ago by
Assa Yeroslaviz
★
1.9k
328
votes
54
replies
68k
views
45 follow
67
votes
22
replies
68k
views
16 follow
75
votes
13
replies
68k
views
10 follow
Tutorial:
Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
updated 4 months ago by
Obi Griffith
20k
•
written 11.1 years ago by
Nicholas Spies
★
1.2k
1
vote
2
replies
67k
views
updated 3.7 years ago by
Istvan Albert
102k
•
written 4.6 years ago by
geethus2009
•
0
1
vote
6
replies
67k
views
103
votes
6
replies
67k
views
6 follow
3.1 years ago by
Nicolas Rosewick
11k
1.2k
votes
206
replies
67k
views
108 follow
updated 18 months ago by
Raony Guimarães
★
1.4k
•
written 13.7 years ago by
Jeremy Leipzig
22k
51
votes
10
replies
66k
views
7 follow
updated 6.7 years ago by
Tao
▴
540
•
written 8.1 years ago by
williantafsilva
▴
400
65
votes
12
replies
65k
views
7 follow
updated 3.7 years ago by
George
•
0
•
written 8.3 years ago by
aggregatibacter
▴
190
41
votes
20
replies
65k
views
8 follow
updated 2.8 years ago by
aimanbarki
▴
20
•
written 10.3 years ago by
Veli Kaan Aydin
▴
50
39
votes
5
replies
65k
views
53
votes
8
replies
65k
views
8 follow
36
votes
14
replies
65k
views
9 follow
updated 12.8 years ago by
Jorge Amigo
14k
•
written 12.8 years ago by
Sara
▴
170
160
votes
24
replies
65k
views
19 follow
updated 18 months ago by
Ram
44k
•
written 11.8 years ago by
Nicolas Rosewick
11k
54
votes
20
replies
65k
views
14 follow
updated 2.3 years ago by
Ram
44k
•
written 12.5 years ago by
Ashutosh Pandey
12k
80
votes
24
replies
65k
views
16 follow
updated 2.1 years ago by
Pierre Lindenbaum
164k
•
written 11.8 years ago by
lyz10302012
▴
470
92
votes
25
replies
64k
views
18 follow
updated 2.3 years ago by
Michael
55k
•
written 13.8 years ago by
Jarretinha
3.4k
47
votes
9
replies
64k
views
40
votes
7
replies
64k
views
52
votes
11
replies
64k
views
7 follow
updated 3.1 years ago by
jared.andrews07
★
18k
•
written 5.1 years ago by
bioinformatics2020
▴
830
19
votes
2
replies
64k
views
updated 8.6 years ago by
Selenocysteine
▴
620
•
written 8.6 years ago by
as9309
▴
60
38
votes
41
replies
64k
views
9 follow
149
votes
35
replies
64k
views
33 follow
Tutorial:
Tools For Metagenomic Data Analysis
164
votes
71
replies
63k
views
36 follow
52
votes
8
replies
63k
views
7 follow
updated 11 months ago by
giulia.trauzzi
▴
30
•
written 11.4 years ago by
madbessoul
▴
250
102
votes
30
replies
63k
views
25 follow
updated 13 months ago by
Ram
44k
•
written 14.8 years ago by
Biostar User
★
1.0k
0
votes
6
replies
63k
views
updated 3.5 years ago by
Abdul Aziz
•
0
•
written 5.7 years ago by
luzglongoria
▴
50
25
votes
5
replies
62k
views
7 follow
updated 12.1 years ago by
JC
13k
•
written 12.1 years ago by
siddharth.sethi5
▴
290
90
votes
44
replies
62k
views
28 follow
93
votes
19
replies
62k
views
18 follow
updated 17 months ago by
Ram
44k
•
written 14.3 years ago by
Niek De Klein
★
2.6k
27
votes
21
replies
62k
views
21 follow
50
votes
13
replies
62k
views
13 follow
updated 14 months ago by
camillab.
▴
160
•
written 8.9 years ago by
nash.claire
▴
510
87
votes
2
replies
61k
views
6 follow
updated 21 months ago by
Ram
44k
•
written 11.5 years ago by
Eric Normandeau
11k
61
votes
23
replies
60k
views
15 follow
30
votes
22
replies
60k
views
11 follow
2
votes
10
replies
60k
views
updated 2.6 years ago by
Ram
44k
•
written 9.9 years ago by
silvi_free88
▴
50
17
votes
6
replies
60k
views
52
votes
15
replies
59k
views
11 follow
updated 2.2 years ago by
beausoleilmo
▴
600
•
written 8.4 years ago by
MAPK
★
2.1k
64
votes
25
replies
59k
views
22 follow
88
votes
12
replies
59k
views
9 follow
50
votes
33
replies
59k
views
10 follow
updated 6.6 years ago by
Kevin Blighe
88k
•
written 8.4 years ago by
ta_awwad
▴
350
80
votes
27
replies
59k
views
20 follow
updated 2.3 years ago by
Johan Zicola
▴
70
•
written 11.0 years ago by
Ram
▴
190
30
votes
8
replies
58k
views
7 follow
updated 2.4 years ago by
Ram
44k
•
written 10.6 years ago by
komal.rathi
★
4.1k
8
votes
3
replies
58k
views
Recent Locations •
All
Perth, Australia, 16 minutes ago
UCLA, 17 minutes ago
India, 17 minutes ago
Latent Space, 27 minutes ago
Ramat Gan, 37 minutes ago
aua, 39 minutes ago
The Netherlands, 40 minutes ago
Recent Awards •
All
Popular Question to
seta
★
1.9k
Popular Question to
mut
•
0
Scholar to
Jordan M Eizenga
▴
650
Popular Question to
L.Grigoreva
•
0
Teacher to
jared.andrews07
★
18k
Popular Question to
ella
•
0
Recent Replies
Comment: Scale-free topology fit index WGCNA
by
andres.firrincieli
3.8k
Without the Sep 5, there is an improvement, at least for the unsigned network. The mean connectivity (mean.k.) is a little bit too high but…
Answer: How to remove duplicated SNPs based on MAF with Plink?
by
hakimbazol
▴
20
Since the MAF values are different, is it possible to filter your result based on MAF first? And then see whether the duplicates are still …
Comment: Single Copy lncRNA
by
Semir
▴
20
I think you should be able to use Blast
# Create BLAST database
makeblastdb \
-in ${input_fasta} \
-dbtype nucl \
…
Answer: model interaction in DeSeq2 with >1K samples
by
i.sudbery
20k
In their discussion of doing single cell RNAseq, which also often has a large number of samples, the DESeq2 authors recommend using glmGamP…
Answer: Concatenating all unmapped or alternative contigs in a reference genome
by
Semir
▴
20
I'd also like to share an alternative answer that might be less cryptic than the sed command:
# First concatenate all fa files in th…
Comment: Feature Counts - potential bug with outfile.jcounts
by
GenoMax
148k
Tagging https://www.biostars.org/u/13578/
<!-- this is nothing -->
Comment: HLA alignment, approximation and frequencies
by
oumo
•
0
Thank you
Let me check out these specialized tools
Comment: Feature Counts - potential bug with outfile.jcounts
by
chrisk
•
0
Thanks for the comment @GenoMax.
We too note, those genes are on opposite strands.
For context, we have an unstranded library.
Cheers,
C…
Comment: Feature Counts - potential bug with outfile.jcounts
by
GenoMax
148k
These two genes are on opposite strands. Based on your command you appear to have unstranded data or are doing the counting with that setti…
Comment: Refseq1405.40 and hisat2-build (-ss and --exon)
by
chrisk
•
0
Hello Biostars community,
For anyone else whom this issue may concern,
It was obviated with a bare metal install of Linux.
We did not hea…
Answer: log transformation before imputation (impute.knn) in proteomic data?
by
KABILAN
▴
130
By which normalization method you have applied to the dataset?
Since normalization and imputation methods are data-specific in nature, yo…
Answer: Spatial correlation between two continuous variables
by
dsull
★
6.9k
Looks at bivariate metrics like Lee’s L
https://link.springer.com/article/10.1007/s101090100064
Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
by
dsull
★
6.9k
I just edited my post above to make it more intuitive+coherent (it was 3AM in Los Angeles last night when I wrote my initial post).
Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
by
dsull
★
6.9k
The URL you linked to only has "batch normalized" expression. Unfortunately, there is no way to undo batch normalization to recover TPM val…
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
by
joseph.fass
▴
10
I thought I could just select alignments from the GAMP in a filter command, outputting a single-path (mostly) GAMP, then convert to GAM. Th…
Traffic: 1031 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6