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121,804 results • Page 578 of 2437
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How to do virtual screening and determining pharmacore
QSAR Docking
4.0 years ago by ashwing.kofficial ▴ 10
8
votes
3
replies
4.1k
views
Please help me understand linkage disequilibrium
LD Linkage disequilibrium SNP
updated 4.0 years ago by 22k • written 4.0 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Job: PhD student for a computational breast cancer research project
Cancer PhD Omics
updated 2.6 years ago by 45k • written 4.0 years ago by • 0
1
vote
1
reply
2.1k
views
Ensembl VEP Docker: cannot write to FASTA lockfile
Ensembl Docker VEP
updated 4.0 years ago by 24k • written 4.0 years ago by • 0
0
votes
0
replies
718
views
How to show intermolecular forces between two chains within the same protein in Pymol
protein python pymol antibody antigen
4.0 years ago by Lucy • 0
2
votes
2
replies
1.5k
views
network analysis for microbial amplicon sequencing data
plot Network igraph R
4.0 years ago by Bioinfonext ▴ 470
0
votes
2
replies
1.6k
views
Unicycler and GNU parallel
Unicycler parallel
4.0 years ago by emma.a ▴ 130
0
votes
1
reply
3.0k
views
PROVEAN input script
python provean variant effect prediction
updated 4.0 years ago by • 0 • written 8.0 years ago by ▴ 10
0
votes
0
replies
671
views
GREAT genome ontology top hits criteria?
bed GREAT gene-ontology go
updated 2.6 years ago by 45k • written 4.0 years ago by ▴ 40
0
votes
0
replies
664
views
Job: Postdoctoral Scientist in Statistical Bioinformatics and Software Development, WEHI, Melbourne, Australia
Australia
4.0 years ago by Gordon Smyth ★ 8.3k
0
votes
0
replies
797
views
GREAT difference between 'mouse phenotype' and 'mouse phenotype single KO'
bed gene-ontology GREAT go
updated 2.6 years ago by 45k • written 4.0 years ago by ▴ 40
0
votes
1
reply
950
views
Running htseq-count to "grab" long non coding gene_id names
lncRNA htseq
updated 4.0 years ago by 153k • written 4.0 years ago by ▴ 210
3
votes
3
replies
1.3k
views
Germline Cancer Mutations
Cancer
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 60
198
votes
46
replies
77k
views
34 follow
Tutorial: Analysing Microarray Data In Bioconductor
microarray-analysis bioconductor
updated 5 months ago by • 0 • written 12.9 years ago by 20k
0
votes
0
replies
684
views
Has anybody used RIP-MD tool for generation of RIN from MD trajectories?
Interaction MD simulation VMD Network Residue
4.0 years ago by Anjali • 0
12
votes
5
replies
1.9k
views
Remove duplicates in fasta files based on a specific value with awk
sort fasta sed awk
updated 4.0 years ago by 21k • written 4.0 years ago by ▴ 30
4
votes
6
replies
1.8k
views
What are the rules for the basic statistic of de novo assembly in RNAseq?
Assembly Trinity RNAseq
4.0 years ago by Riku ▴ 80
1
vote
0
replies
856
views
allele balance gatk
NGS gatk Allele-balance
updated 3.5 years ago by 45k • written 4.0 years ago by ▴ 30
1
vote
2
replies
3.0k
views
How to install hisat2 on Mac OS Big Sur
hisat2 anaconda bioconda
4.0 years ago by Atsunop • 0
9
votes
4
replies
2.4k
views
Illumina Q score
Illumina quality-score
updated 23 months ago by 45k • written 4.0 years ago by ▴ 170
4
votes
0
replies
1.5k
views
Job: 20 Fully funded PhD studentships in Quantitative Biology in Lausanne, Switzerland
phd studentship fellowship
updated 2.2 years ago by 45k • written 4.0 years ago by ▴ 740
1
vote
5
replies
1.9k
views
Speeding up HaplotypeCaller analysis
Linux CPU HaplotypeCaller
updated 4.0 years ago by 166k • written 4.0 years ago by ▴ 150
6
votes
3
replies
2.2k
views
TMM followed by inverse normal transform
edgeR GTEx RNAseq
updated 4.0 years ago by ★ 8.3k • written 4.0 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Job: Senior Bioinformatician at AstraZeneca - Biology/Chemistry Interface and Proteomics Research (Cambridge, UK)
AstraZeneca omics drug-discovery
updated 2.6 years ago by 45k • written 4.0 years ago by ▴ 230
4
votes
3
replies
3.4k
views
UCSC liftover
UCSC PyLiftover liftover
updated 4.0 years ago by ▴ 670 • written 4.1 years ago by ▴ 10
1
vote
2
replies
1.4k
views
How to download GTEx figure from USCS genome browser
UCSC GTEx
updated 4.0 years ago by ▴ 670 • written 4.1 years ago by ★ 9.6k
0
votes
5
replies
2.3k
views
what does mean this error ? "(ERR): hisat2-align exited with value 1" in mapping long noncoding RNAs
long-non-coding-RNA lncRNA
updated 17 months ago by 45k • written 4.0 years ago by • 0
0
votes
0
replies
526
views
Can I adding (multiply ) the P-value of one Transcriptioin factor identified by two motif?
motif
4.0 years ago by yli13 • 0
0
votes
1
reply
1.1k
views
Transcription Factor Functions
factor database transcription
updated 4.0 years ago by 36k • written 4.0 years ago by • 0
6
votes
4
replies
2.0k
views
MEME suite compare motifs between species
motifs MEME compare species
4.0 years ago by Rafael Soler ★ 1.3k
0
votes
1
reply
1.1k
views
Has anyone here used the MAC tool for merging assemblies?
assembly WGS genomes
updated 4.0 years ago by 56k • written 4.0 years ago by ▴ 10
1
vote
2
replies
947
views
Different Gene Lengths and Expected Gene Lengths from Sample to Sample
rnaseq
updated 4.0 years ago by 15k • written 4.0 years ago by ▴ 10
2
votes
2
replies
2.0k
views
Why Ks value is NA in KaKs calculator
KaKs software error gene
updated 4.0 years ago by • 0 • written 6.1 years ago by • 0
0
votes
2
replies
1.3k
views
Mapping reads to 5 UTR, 3 UTR and CDS
UTR mapping CDS
updated 2.5 years ago by 45k • written 4.0 years ago by • 0
1
vote
1
reply
723
views
What is the difference between GERP S and GERP N?
annotation GERP pathogenic genomics
updated 3.6 years ago by ▴ 350 • written 4.0 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Pan-genome visualization similar to anvio?
analysis pangenome
updated 4.0 years ago by 3.9k • written 4.0 years ago by ▴ 60
5
votes
1
reply
1.5k
views
What does samtools mean by 'orientation' when marking duplicates?
read_orientation samtools htslib
updated 4.0 years ago by ▴ 390 • written 4.1 years ago by ▴ 180
0
votes
4
replies
2.0k
views
Rare variant association analysis (SKAT-O) - Power calculation
association analysis SKAT-O . Genetics
4.0 years ago by Alexandros.Frydas ▴ 30
0
votes
0
replies
588
views
Using UnifiedGenotyper on single chromosome without coordinates
GATK
4.0 years ago by shpak.max ▴ 60
3
votes
9
replies
3.7k
views
Filter DGElist object: keep only genes expressed in sample at the same time as a particular gene of interest
edger RNA-seq dgelist R
4.0 years ago by Ondina ▴ 100
1
vote
1
reply
894
views
Could it happen that a cwl created in a different editor is not correctly parsed in rabix composer?
rabix cwl
updated 4.0 years ago by 153k • written 4.0 years ago by • 0
7
votes
9
replies
7.4k
views
Merge contigs in fasta file
fasta merge contigs
updated 4.0 years ago by ▴ 10 • written 6.3 years ago by ▴ 350
1
vote
2
replies
1.8k
views
Remote blast query limit
remote blast
4.0 years ago by timothy.kirkwood ▴ 140
1
vote
1
reply
830
views
Cleaning Blast results
codes BLASTP multiple scripts hits
updated 4.0 years ago by 15k • written 4.0 years ago by • 0
0
votes
0
replies
1.8k
views
Job: We are looking for bioinformaticians for collaboration
startup bioinformaticians
updated 2.2 years ago by 45k • written 4.0 years ago by • 0
0
votes
2
replies
1.0k
views
fetch out common/conserved genes from a bunch of bacteria species
common analysis genes comparative
4.0 years ago by zhangdengwei ▴ 210
0
votes
6
replies
3.6k
views
Transcripts mapping using Salmon
Salmon mRNA-seq RNA-seq total
4.0 years ago by g.wang2 ▴ 10
1
vote
1
reply
1.7k
views
SCENIC-openloom not working
sc-rna SCENIC sequencing
updated 23 months ago by • 0 • written 4.0 years ago by ▴ 10
1
vote
6
replies
3.0k
views
Use of GenotypeGVCFs in population genetic studies
WGS Introgression GenotypeGVCFs ADMIXTURE GATK
updated 4.0 years ago by ★ 1.2k • written 4.0 years ago by ▴ 150
1
vote
4
replies
1.4k
views
Cutoff value for shrunken logFC
deseq
updated 4.0 years ago by 89k • written 4.0 years ago by ▴ 20
121,804 results • Page 578 of 2437
Recent Votes
Universal Human Reference RNA Sample
Universal Human Reference RNA Sample
Are these 10x samples too low quality for downstream analysis?
Are these 10x samples too low quality for downstream analysis?
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
Answer: Question about substitution of KEGG
Answer: Universal Human Reference RNA Sample
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Recent Replies
Comment: chimeraTE GTF format error by frarodmar17 • 0
The analysis did not work with the included GTF file. I also ran AGAT but I did not get conclusions as the output only showed me the number…
Comment: Help with metagenomics viral by cfos4698 ★ 1.1k
It's possible/likely that your sequencing simply didn't recover any virus reads, despite RT-PCR detection. Often there is too much 'other s…
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in by Jordan M Eizenga ▴ 740
I would say the answer is unfortunately no. It would be possible to make smaller individual XG indexes, but downstream subcommands in the V…
Comment: Question about substitution of KEGG by dxh0222 ▴ 10
Thanks for your recommendation! I think kofam_scan is suitable for me.
Comment: How to use CAFE from Orthofinder Results by san96 ▴ 190
Hi, are you referring to Orthogroups.GeneCount.tsv? Thank you.
Comment: Universal Human Reference RNA Sample by michael.j.apostolides ▴ 80
For example you can see it here, this is the first one in the table (SRR1215996): https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=ru…
Answer: Universal Human Reference RNA Sample by michael.j.apostolides ▴ 80
I believe here: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP025982 They are from the SEQC https://www-nature-com.proxy3.library.…
Answer: Question about substitution of KEGG by Mensur Dlakic ★ 29k
There is a tool that uses KEGG hidden Markov models and HMMer to scan individual proteins. It is not automated and may require some fiddlin…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data by 1769mkc ★ 1.3k
DRAGEN are you using dragen 4.4 release for your workflow?
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs by Jeremy Leipzig 23k
Your strategy sounds ok but we would need to see your modified file and the exact command you ran to know what happened.
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data by Arindam ▴ 10
I think for mapping to the reference genome
Comment: Local Synteny Analysis with Uncharacterized Genes by Joe 22k
+1 for `clinker`, came here to make the same suggestion
Comment: Help with metagenomics viral by CECEL • 0
Hi, thanks for answer! I'm using Kraken2, but the classified reads, when put on BLAST, didn't returned nothing, even in Viruses_db...
Comment: How to obtain a refFlat file for the Rat by GenoMax 153k
You can't mix and match genomes and annotation as we discussed in the prior thread. Are you using the genome from UCSC, if you are using th…
Comment: Huge discrepancy between Pipseeker & DRAGEN for Pipseq data by 1769mkc ★ 1.3k
"DRAGEN uses a newer method employing hashtables" you mean the reference builder?
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