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121,922 results • Page
718 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
1.3k
views
overlay of DE data on reactome pathway
pathway
updated 3.5 years ago by
Ram
45k • written 5.7 years ago by
kanwarjag
★ 1.2k
4
votes
3
replies
3.5k
views
Graph viewer for Reactome Pathways
Reactome
Graph-viewer
R
updated 2.7 years ago by
Ram
45k • written 10.3 years ago by
Deepak Tanwar
★ 4.2k
2
votes
2
replies
1.1k
views
R error: could not find function "makeTxDbFromUCSC"
R
RNA-Seq
4.6 years ago by
xiaoleiusc
▴ 140
0
votes
0
replies
906
views
Tool:
MultiLink Analysis: Brain Network Comparison via Sparse Connectivity Analysis
networks
neuroscience
connectome
brain
updated 2.3 years ago by
Ram
45k • written 4.6 years ago by
alex.crimi
• 0
0
votes
0
replies
768
views
Translate evolutionary model for MrBayes
phylogeny
updated 4.6 years ago by
Biostar
20 • written 4.7 years ago by
lagartija
▴ 160
0
votes
0
replies
828
views
How to investigate population structure
GWAS
VCFs
genome
Assembly
4.6 years ago by
Kumar
▴ 170
0
votes
0
replies
1.1k
views
Panel of normals for Mutect2 GRCh37
gatk
broad
mutect2
4.6 years ago by
nhaus
▴ 420
1
vote
1
reply
671
views
Rockhopper tool help
RNA-Seq
R
next-gen
alignment
4.6 years ago by
qstefano
▴ 20
1
vote
3
replies
1.7k
views
RNAseq GO enrichment analysis: GO organism .db
R
RNA-Seq
GO
updated 4.6 years ago by
e.rempel
★ 1.1k • written 4.6 years ago by
Neuls
▴ 20
0
votes
1
reply
874
views
cloud repository of the ICGC
ICGC
collaboratory
AWS
updated 4.6 years ago by
GenoMax
153k • written 4.6 years ago by
Zahra
▴ 110
3
votes
4
replies
2.8k
views
Convert transcript coordinates to genomic coordinates
alignment
4.6 years ago by
vkkodali_ncbi
★ 3.9k
0
votes
1
reply
1.1k
views
ASpli gbCounts() error
RNA-Seq
ASpli
alternative splicing
R
4.6 years ago by
Dominik_H
• 0
1
vote
4
replies
2.3k
views
How to subset a FASTQ file based on a list of sequences
FASTQ filter
updated 4.6 years ago by
Biostar
20 • written 8.6 years ago by
heso
▴ 40
1
vote
5
replies
4.8k
views
Processing KAAS output (lists of KO numbers) into straightforward knowledge
kegg
kaas
updated 3.2 years ago by
Ram
45k • written 9.6 years ago by
antortjim
▴ 10
0
votes
4
replies
2.6k
views
I downloaded SRA toolkit but i cant instal it
gene
sequence
updated 4.6 years ago by
ATpoint
89k • written 4.6 years ago by
s_lamee
• 0
0
votes
1
reply
1.1k
views
bedtools getfasta giving errors
RNA-Seq
genome
next-gen
gene
4.6 years ago by
mithukuntala
• 0
0
votes
5
replies
1.5k
views
Issue when merging FastQ
Fastq
Merging
mapping
SAM
BAM
updated 4.6 years ago by
Biostar
20 • written 4.7 years ago by
gayal25016
• 0
2
votes
1
reply
2.8k
views
Volcano plot of Deseq2 data
rna-seq
4.6 years ago by
aranyak111
• 0
2
votes
7
replies
4.3k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing
SCTransform
Seurat
4.6 years ago by
paria
▴ 110
0
votes
3
replies
2.1k
views
Extract gene Name, ID, and description from gff3 file
Annotations
updated 4.6 years ago by
Biostar
20 • written 4.8 years ago by
akibio
• 0
2
votes
2
replies
1.2k
views
GEOquerry error, expression dataset is loading as a list
software error
updated 4.6 years ago by
ATpoint
89k • written 4.6 years ago by
angus.j.g.campbell
▴ 10
0
votes
8
replies
2.8k
views
repeat masker output looks weird: 0% for all of repeat squences
genome
sequencing
updated 4.6 years ago by
Michael
56k • written 4.6 years ago by
slin023
▴ 20
1
vote
7
replies
1.7k
views
Problems with the same gene names in R, any help?
R
gene
updated 4.6 years ago by
lessismore
★ 1.4k • written 4.6 years ago by
ymervenuryavuz
• 0
0
votes
2
replies
4.8k
views
[ti_index_core] the chromosome blocks not continuous at line xxxx, is the file sorted? [pos 1]
vcf
index
variant
updated 4.6 years ago by
Biostar
20 • written 7.6 years ago by
shubhra.bhattacharya
▴ 140
4
votes
5
replies
5.9k
views
Is my WGCNA soft threshold (power) too low?
wgcna
RNA-Seq
clustering
network
4.6 years ago by
jfaberha
▴ 50
0
votes
2
replies
1.2k
views
BLAST like output from NGS fastq file
NGS
blast
updated 2.3 years ago by
Ram
45k • written 4.6 years ago by
MSRS
▴ 590
3
votes
3
replies
11k
views
What is the difference between gbk and gbf file?
annotation
prokka
updated 3.8 years ago by
oschwengers
▴ 120 • written 4.6 years ago by
traditionalGuy
▴ 60
0
votes
1
reply
1.9k
views
cellranger aggr troubleshooting
cellranger aggr
multiomics
10x
RNA-Seq
updated 4.6 years ago by
Biostar
20 • written 4.6 years ago by
jbonarot
• 0
1
vote
3
replies
1.1k
views
Size factors upon collapsing replicates in RNA-seq analysis
RNA-Seq
DESeq2
R
4.6 years ago by
mickey_95
▴ 110
20
votes
3
replies
4.9k
views
7 follow
Co-expression analysis at single cell level
rna-seq
scRNA
updated 21 months ago by
Quang
▴ 10 • written 4.6 years ago by
coldshot
▴ 60
0
votes
3
replies
1.2k
views
confusion with GSEA result with custome gene set
RNA-Seq
enrichment
GSEA
4.6 years ago by
SJ Basu
▴ 60
1
vote
1
reply
896
views
Software/package that can visualise amino acid mutations against a reference genome
mutations
visualisations
4.6 years ago by
SaltedPork
▴ 170
3
votes
4
replies
1.9k
views
diferentially expressed ensembl ID to gene symbol conversion
DEG
Ensembl
HGNC_symbol
biomart
4.6 years ago by
imaparna27
▴ 20
7
votes
6
replies
5.7k
views
Whole Genome Dna Amplification Before Applying Wgs
ngs
dna
snp
indel
qualitycontrol
updated 4.6 years ago by
Biostar
20 • written 12.5 years ago by
Thomas
▴ 770
0
votes
1
reply
744
views
circBase related query
circBase
4.6 years ago by
harry
▴ 40
0
votes
0
replies
795
views
23andMe Internal I codes to RSID list?
SNP
4.6 years ago by
r0bin.rt44
• 0
2
votes
3
replies
940
views
Merging fastq files paird end
fastq
updated 4.6 years ago by
GenoMax
153k • written 4.6 years ago by
zizigolu
★ 4.4k
3
votes
3
replies
2.0k
views
How to plot alignment statistics; how many reads are mapped to the genome?
samtools
RNA-Seq
4.6 years ago by
anamaria
▴ 220
2
votes
12
replies
4.9k
views
Error: malformed header while uploading .vcf.gz files to Michigan imputation server
SNP
software error
updated 4.6 years ago by
Biostar
20 • written 6.1 years ago by
manprees
• 0
6
votes
5
replies
3.2k
views
Forum:
Pacific Bio Long Reads vs Illumina Short Reads
next-gen
RNA-Seq
alignment
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
dk0319
▴ 70
1
vote
1
reply
1.2k
views
How to get information about antisense/sense lncRNAs?
RNA-Seq
lncrna
gencode
updated 4.6 years ago by
jared.andrews07
★ 19k • written 4.6 years ago by
newbie
▴ 140
10
votes
15
replies
15k
views
6 follow
cellranger count help
RNA-Seq
10x
updated 4.6 years ago by
Max.Ka
▴ 30 • written 5.5 years ago by
jsl
▴ 50
0
votes
1
reply
909
views
VCF to bcf conversion; vcf file header missing
vcftools
VCF
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
safiq713
▴ 10
0
votes
3
replies
1.1k
views
How can I get a count of mRNA + lncRNAs from Gencode + lncipedia?
rna-seq
lncRNA
4.6 years ago by
njk639
• 0
1
vote
13
replies
7.8k
views
6 follow
DiffBind error when calling dba.count
ChIP-Seq
updated 18 days ago by
Irene
• 0 • written 5.3 years ago by
mropri
▴ 170
1
vote
4
replies
1.7k
views
How to improve the alignment performance in targeted sequencing data
DNA-seq
targeted-sequencing
alignment
updated 4.6 years ago by
swbarnes2
15k • written 4.6 years ago by
SkyL
▴ 10
3
votes
8
replies
1.7k
views
Merging .fq files per sample using a big loop - BASH?
fastq
bash
genomics
updated 2.5 years ago by
Ram
45k • written 4.6 years ago by
giulia.trauzzi
▴ 30
0
votes
1
reply
670
views
how to use EUPAN whith assembled genomes
genome
Assembly
updated 4.6 years ago by
Biostar
20 • written 4.6 years ago by
hafida.bioinfo.125
• 0
0
votes
1
reply
714
views
About peptide design
software error
updated 4.6 years ago by
Mensur Dlakic
★ 30k • written 4.6 years ago by
fatema19.bge
• 0
4
votes
1
reply
59k
views
ggmaplot error: Unlabeled data points (too many overlaps). Consider increasing max.overlaps
MAplot
r
ggplot2
ggmaplot
updated 4.2 years ago by
ATpoint
89k • written 4.7 years ago by
jaqx008
▴ 110
121,922 results • Page
718 of 2439
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Comment: Genome Assembly QC from BAM files
by
colindaven
7.9k
yes they look excellent
Comment: Genome Assembly QC from BAM files
by
SomeOne
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hello @colindaven I ran the INSPECTOR tool you mentioned on the genome assemblies. Below are stats for one of my sample (othere were simi…
Comment: Chimera removal dilemma in 16S V3–V4: necessary when using Kraken2/Bracken?
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22k
I'm not quite sure what you are asking. Stochastic reaction networks like this can be coded using the Gillespie algorithm. Genes being …
Comment: miRNA low mapping ratings
by
Ant
▴ 50
No, these are from the total reads, but when considering only the reads with adapter, I checked MultiQC again and it’s around 10–20% when a…
Comment: miRNA low mapping ratings
by
GenoMax
153k
> the total number of reads is very low (around 1–10% of the total reads) Are these the reads that actually have the QIAseq 3'-miRNA adapt…
Comment: Chimera removal dilemma in 16S V3–V4: necessary when using Kraken2/Bracken?
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153k
> cutadapt > bbduk > bowtie2 > qiime2 > dada2 > kraken2 > krona Curious as to why you have `cutadapt` and `bbduk`. `bbduk` should be able…
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by
i.sudbery
22k
As GenoMax said, the most likely thing to me here is that there is nothing cloned into the library. I can't think of any bioinformatic reas…
Comment: miRNA low mapping ratings
by
Ant
▴ 50
Sorry, I gave you answers based on different samples. The thing is, the total number of reads is very low (around 1–10% of the total reads)…
Comment: miRNA low mapping ratings
by
Ant
▴ 50
Yes, it was in 75bp. I don1t know if it was the first time he used the kit, but I remember he needs to adjust the protocol.
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153k
> Is it possible to do this at the assembly level? By aligning to a reference you can find the differences between your assembly and the …
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22k
4bp would suggest there was nothing cloned into the library. But i'm a bit confused. In example in the question, it talks about 50,000 re…
Comment: miRNA low mapping ratings
by
GenoMax
153k
> while fewer than 100,000 reads were around 18-22 bp. That is why are you likely seeing the numbers you are observing in alignments. Wa…
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I would imagine this is something one of the AI code tools could handle.
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