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454 results • Page 4 of 10
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26
votes
27
replies
2.1k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 40
16
votes
8
replies
2.1k
views
8 follow
Forum: What are the most important unresolved problems in Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 7.6 years ago by ★ 2.5k
4
votes
3
replies
2.1k
views
Forum: What are the benefits of creating your own R packages?
R
updated 12 months ago by 43k • written 6.9 years ago by ▴ 810
21
votes
15
replies
2.1k
views
9 follow
Forum: Working abroad without a PhD
career
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.4k
49
votes
20
replies
2.1k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 4 months ago by ★ 2.6k • written 4 months ago by ★ 27k
7
votes
20
replies
2.1k
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR RNA-Seq TopHat
updated 11 months ago by 43k • written 3.3 years ago by ▴ 10
0
votes
6
replies
2.1k
views
7 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers
software-error
updated 11 months ago by 43k • written 5.6 years ago by • 0
1
vote
8
replies
2.1k
views
Forum: Memory-driven computing accelerates genomic data processing
HPC
updated 11 months ago by 43k • written 5.3 years ago by 11k
0
votes
0
replies
2.1k
views
Forum: Genetic linkage analysis software tools and comparison
genetic linkage-analysis
updated 11 months ago by 43k • written 6.7 years ago by ★ 9.4k
5
votes
14
replies
2.1k
views
Forum: immediate help needed for genome sequence analysis of bacteria
genome miseq webinar paired-end
updated 12 months ago by 43k • written 7.1 years ago by • 0
23
votes
11
replies
2.1k
views
9 follow
Forum: file and directory management best practices
file-management
updated 11 months ago by 43k • written 3.7 years ago by ▴ 140
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 11 months ago by 43k • written 6.0 years ago by 5.3k
21
votes
11
replies
2.0k
views
Forum: Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
12
votes
4
replies
2.0k
views
Forum: Update: CRISPR off-target effects causing unexpected mutations - good science or media hype?
off-target CRISPR
updated 12 months ago by 43k • written 6.9 years ago by ★ 1.7k
3
votes
6
replies
2.0k
views
Forum: Are you using GATK ?
GATK4 GATK
updated 11 months ago by 43k • written 6.5 years ago by ▴ 20
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
7
votes
4
replies
2.0k
views
Forum: Bioinformatics / Computational Biology PhD
Computational-Biology bioinformatics PhD
updated 10 months ago by 43k • written 8.2 years ago by • 0
17
votes
17
replies
2.0k
views
6 follow
Forum: Journal for beginners
journal
updated 11 months ago by 43k • written 6.1 years ago by ▴ 20
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 43k • written 3.9 years ago by 11k
5
votes
2
replies
2.0k
views
Forum: [Closed]Survey:Interested in how scientists communicate their work?This is how you can contribute!
survey communication sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.8k
21
votes
11
replies
2.0k
views
8 follow
Forum: what I want to do after the PhD?
PhD
updated 12 months ago by 43k • written 7.2 years ago by ★ 4.3k
14
votes
9
replies
2.0k
views
Forum: The push toward standardisation
stadardisation
updated 11 months ago by 43k • written 6.5 years ago by 87k
0
votes
0
replies
2.0k
views
Forum: Any 'Biostars' like forum exclusively for bacterial Genomics ?
Bacterial-Genomics
updated 11 months ago by 43k • written 6.7 years ago by ▴ 180
22
votes
8
replies
1.9k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.0 years ago by ▴ 50
12
votes
0
replies
1.9k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.3k
17
votes
14
replies
1.9k
views
10 follow
Forum: What would be the trend in next few years in NGS era?
NGS sequencing
updated 11 months ago by 43k • written 5.5 years ago by ▴ 800
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 11 months ago by 43k • written 3.4 years ago by 8.7k
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 7 months ago by 82k • written 17 months ago by ▴ 30
7
votes
4
replies
1.9k
views
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy
updated 11 months ago by 43k • written 5.6 years ago by • 0
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.2 years ago by ▴ 70
1
vote
8
replies
1.9k
views
Forum: Statistics graduate wants to do some bioinformatics analysis
next-gen R statistics
updated 11 months ago by 43k • written 6.6 years ago by • 0
0
votes
3
replies
1.9k
views
Forum: European Genome-phenome Archive (EGA) vs Gene Expression Omnibus (GEO)
GEO EGA
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
3
votes
4
replies
1.9k
views
Forum: Recommendation for applied bioinformatics labs focusing on cancer biology
cancer-genomics
updated 11 months ago by 43k • written 5.6 years ago by ▴ 100
1
vote
1
reply
1.9k
views
Forum: Any suggestions for pursuing MBA for computational biologist
scientist management MBA
updated 11 months ago by 43k • written 6.6 years ago by ▴ 650
18
votes
16
replies
1.8k
views
Forum: Why are people not working on gene prioritization and candidate gene selection for new experiment design?
gene-prioritization
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
8
votes
2
replies
1.8k
views
Forum: Factors to consider when applying to computational biology PhD positions
graduate-school academia
updated 12 months ago by 43k • written 7.0 years ago by ★ 1.1k
2
votes
4
replies
1.8k
views
Forum: Crowdsourcing/Volunteer Bioinformatics - How to recognise volunteer effort and manage reliability of data
Volunteer alignment Assembly Crowd-sourcing genome
updated 12 months ago by 43k • written 6.8 years ago by ▴ 10
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
8
votes
4
replies
1.8k
views
Forum: Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by 43k • written 6.1 years ago by ▴ 40
8
votes
11
replies
1.8k
views
Forum: What makes a good bionformatics prediction service from the point of user experience?
server prediction-service
updated 11 months ago by 43k • written 6.5 years ago by ▴ 40
2
votes
8
replies
1.8k
views
Forum: Wanted: Analysis of RNA-seq data with Bioconductor short course/training (~3 months)
rna-seq
updated 12 months ago by 43k • written 7.0 years ago by ▴ 30
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 11 months ago by 43k • written 6.4 years ago by 8.4k
1
vote
4
replies
1.8k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 11 months ago by 43k • written 5.4 years ago by ▴ 120
21
votes
18
replies
1.8k
views
Forum: Is it safe to keep our data in github
github
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
5
votes
5
replies
1.8k
views
Forum: Oxford University Press frustrations
licenses open-acess
updated 12 months ago by 43k • written 6.9 years ago by 35k
454 results • Page 4 of 10
Recent Votes
Help with VG Toolkit: VCF Output is Empty
Comment: Using R in Conda
Do I need to normalize level 3 TCGA data?
Answer: UMI-tools deduplication of reads with UMI at the start of the line
Answer: TCGA gene expression
Answer: Seurat V5 integration
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
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Scholar to Jesse ▴ 770
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Recent Replies
Answer: Importing a fastq file by size_t ▴ 120
run command `explorer.exe .` in wsl terminal, and then drag file to folder
Comment: Contig assembly task, errors by Philipp Bayer 8.4k
Hi Ricardo! CAP3 is an 'older' overlap assembler from 1999 which is perfectly suited for these kinds of 'small' tasks. I used it last in my…
Comment: absolute path for symbolic links in Snakefile by Jesse ▴ 770
That's really handy, and much more of a general solution than stripping off the directory names! So yifangt86, if you're on Linux you can …
Comment: Truncated metadata file report from ENA Portal API by GenoMax 142k
Are you missing a `"` at the end of the URL. Doing wget -O test.out "https://www.ebi.ac.uk/ena/portal/api/filereport?accession=PRJNA43…
Comment: Different output for read length by marco.barr ▴ 100
very strange, I double checked the BAM file and it is the same one I used for your request. Are the commands I wrote above correct? How is …
Comment: Different output for read length by Pierre Lindenbaum 161k
the first read as a length of 1747, i wonder how you can just find '50' $ wget -qO - "https://gist.githubusercontent.com/Macdot3/4650…
Comment: Problem with Seurat package in PercentageFeatureSet function by bk11 ★ 2.4k
Yes, `CreateAssayObject` function is used for only expression matrix.
Comment: Different output for read length by marco.barr ▴ 100
Here is my result, I hope you can see it. [https://gist.github.com/Macdot3/4650243a10540d8c06f728ffc16a136c][1] [1]: https://gist.gith…
Comment: Different output for read length by marco.barr ▴ 100
I just published my link on paste, why can't I see my public paste on the site?
Comment: cellranger error message by Max • 0
I'm having a similar issue. The sample_id matches the filename prefix before _S1_L001, but I get the error: Log message: Requested sample(s…
Comment: Different output for read length by marco.barr ▴ 100
Thanks so much GenoMax, I'm sharing the link as you told me
Comment: Different output for read length by GenoMax 142k
Post the data at pastebin.com and add a link here or you could a GitHub gist. You were suspended by biostars SPAM bot since you pasted link…
Comment: Different output for read length by GenoMax 142k
Post the data at pastebin.com and add the link here. You were suspended by biostars SPAM bot since you pasted these links in quick successi…
Comment: RNA seq analysis by s.ghazala • 0
Could you clarify on what exactly you are referring to with "SRA data table". If you are retrieving fastq files (raw data), then you could …
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA by sovrappensiero ▴ 100
Thanks, Chris. I really appreciate your help. This has clarified a lot for me!
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