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1,000 results • Page
6 of 20
Sort: Votes
Rank
Views
Votes
Replies
26
votes
50
replies
14k
views
8 follow
Tool:
Retrieve a subset of FASTA from large Illumina multi-FASTA file
fasta
multi-fasta
illumina
updated 10 months ago by
Ram
43k • written 8.0 years ago by
hcwang
▴ 50
26
votes
27
replies
2.2k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 3 months ago by
dsull
★ 6.0k • written 4 months ago by
Rozita
▴ 40
26
votes
9
replies
19k
views
8 follow
Favorite Splice Site Prediction/Evaluation Tools
splicing
prediction
updated 11 months ago by
abhilashdasari.10
▴ 30 • written 11.5 years ago by
Alex Paciorkowski
3.5k
26
votes
11
replies
5.1k
views
7 follow
How To Filter Affymetrix Probes Related To Murine Genes Encoding Membran Proteins
affymetrix
gene
annotation
mouse
gene
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Fred Fleche
4.3k
26
votes
18
replies
8.5k
views
10 follow
Indexing Compressed Fastq-Like Data
fastq
updated 10 months ago by
Ram
43k • written 13.8 years ago by
2184687-1231-83-
★ 5.1k
25
votes
19
replies
8.2k
views
10 follow
Tool:
pathfindR - Enrichment Analysis using Active Subnetworks
subnetwork
R
pathway-enrichment
updated 11 months ago by
Ram
43k • written 6.2 years ago by
egeulgen
★ 1.3k
25
votes
10
replies
3.0k
views
10 follow
Any suggestions for basic intro to submitting jobs to an HPC cluster?
ngs
hpc
updated 11 months ago by
Ram
43k • written 5.7 years ago by
m98
▴ 420
25
votes
7
replies
1.9k
views
6 follow
Forum:
What Are The Best Bioinformatics Course Materials [2020]
course
teaching
updated 12 months ago by
Ram
43k • written 3.4 years ago by
Carlo Yague
8.7k
25
votes
9
replies
44k
views
Converting Gff To Bed With Bedtools?
gff
bed
bedtools
updated 3 months ago by
Ram
43k • written 11.3 years ago by
user
▴ 940
25
votes
8
replies
11k
views
6 follow
Tools For Chipseq Scale Motif Finding?
motif
motif
chip-seq
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Cassj
★ 1.3k
25
votes
11
replies
3.8k
views
6 follow
Forum:
Site Use Guidelines
meta
biostars
Guidelines
updated 22 days ago by
Ram
43k • written 14.6 years ago by
Istvan Albert
100k
25
votes
15
replies
7.7k
views
9 follow
Randomize Read Order In Multigbp Fastq File?
fastq
updated 9 weeks ago by
Cliff
• 0 • written 12.9 years ago by
2184687-1231-83-
★ 5.1k
25
votes
11
replies
15k
views
10 follow
Retrieve GFF3 file from ncbi
gff3
ncbi
efetch
updated 3 months ago by
MirianT_NCBI
▴ 720 • written 6.3 years ago by
john
▴ 130
25
votes
11
replies
30k
views
9 follow
Bed For Agilent Sureselect All Exon Kits ?
bed
exome
agilent
next-gen
written 11.5 years ago by
Pierre Lindenbaum
161k
25
votes
14
replies
5.5k
views
6 follow
Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
database
updated 10 months ago by
Ram
43k • written 11.4 years ago by
aidan-budd
1.9k
24
votes
6
replies
14k
views
How To Convert Uniprot Ids To Ensembl Gene/Transcript Ids
uniprot
updated 7 months ago by
Ram
43k • written 11.6 years ago by
learnerforever
▴ 520
24
votes
21
replies
7.6k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
blast
alignment
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Farbod
★ 3.4k
24
votes
14
replies
8.4k
views
9 follow
How To Find All Gwas Studies That A Given Gene Has Been Implicated In?
gwas
gene
genome
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Andrew Su
4.9k
24
votes
11
replies
10k
views
How To Download All Est Sequences For Organism Xx From Ncbi?
eutils
genbank
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Yannick Wurm
★ 2.5k
24
votes
26
replies
3.7k
views
Tool:
ClinCNV: CNV detection from short reads
variant-calling
cna
cnv
updated 11 months ago by
Ram
43k • written 4.6 years ago by
German.M.Demidov
★ 2.9k
24
votes
26
replies
2.1k
views
6 follow
Forum:
Organizing a Bioinformatics Conference ?
meeting
conference
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Pierre Lindenbaum
161k
24
votes
15
replies
19k
views
7 follow
how can I remove duplicated variants from vcf file?
SNP
vcf
updated 8 months ago by
Ram
43k • written 6.8 years ago by
kk.mahsa
▴ 140
24
votes
22
replies
27k
views
11 follow
replace fasta headers with another name in a text file
perl
updated 10 months ago by
nr299
• 0 • written 9.9 years ago by
Jemo
▴ 60
24
votes
9
replies
11k
views
6 follow
Exploring Snp Data
snp
association
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Bioch'Ti
★ 1.1k
24
votes
9
replies
13k
views
9 follow
.mcool to .hic
RNA-Seq
updated 8 months ago by
Ben B
▴ 50 • written 5.3 years ago by
dimitrischat
▴ 210
23
votes
3
replies
2.5k
views
Releasing Software Under Multiple Licenses
written 13.5 years ago by
Bio_X2Y
★ 4.4k
23
votes
11
replies
2.1k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 11 months ago by
Ram
43k • written 3.7 years ago by
nkinney06
▴ 140
23
votes
12
replies
2.8k
views
Genes encoded on both strands of DNA?
Genes
strand
updated 7 months ago by
Ram
43k • written 2.0 years ago by
A_heath
▴ 160
23
votes
18
replies
1.5k
views
Forum:
Versioning of Blast DB and Reproducible Research
database
blast
reproducible-research
updated 11 months ago by
Ram
43k • written 4.0 years ago by
makrez
▴ 60
23
votes
15
replies
5.1k
views
6 follow
Forum:
On the usage of Golang
assembly
next-gen
alignment
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Lucas Peres
▴ 80
23
votes
6
replies
13k
views
Forum:
List Of File Formats Used In Bioinformatics?
bioinformatics
updated 10 months ago by
Ram
43k • written 11.6 years ago by
veronicaschroeder78
▴ 140
23
votes
21
replies
9.0k
views
9 follow
fastest UMAP method
UMAP
R
updated 6 months ago by
Mensur Dlakic
★ 27k • written 4.5 years ago by
grey
▴ 30
23
votes
13
replies
2.0k
views
11 follow
Blog:
Don't choose Novogene for your sequencing projects
Illumina
Novaseq
NGS
sequencing
updated 9 months ago by
Radu Tanasa
▴ 90 • written 10 months ago by
Sasaki
• 0
23
votes
15
replies
5.8k
views
7 follow
Looking For Linux Vendors To Order A Centos/Ubuntu Based Webserver To Host Bioinformatics Apps
linux
server
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Khader Shameer
18k
23
votes
14
replies
5.4k
views
What Bioinformatics Software Is There, Written In D?
programming
software
updated 10 months ago by
Ram
43k • written 12.8 years ago by
Samuel Lampa
★ 1.3k
23
votes
19
replies
4.3k
views
7 follow
Tool:
Big Browser : a new genom browser in development
genome-browser
updated 10 months ago by
Ram
43k • written 8.2 years ago by
sacha
★ 2.4k
23
votes
18
replies
12k
views
7 follow
Fasta header trimming
sequence
updated 8 months ago by
Ankit
• 0 • written 7.3 years ago by
leo1985.arnab
▴ 50
23
votes
8
replies
9.4k
views
6 follow
How Do I Map, Align, And Plot My Solid Results?
galaxy
rna
solid
updated 7 months ago by
Ram
43k • written 14.3 years ago by
Jason
▴ 920
23
votes
10
replies
12k
views
Tool:
ggtree: phylogenetic tree visualization and annotation
ggtree
phylogeny
visualization
updated 10 months ago by
Ram
43k • written 7.9 years ago by
Guangchuang Yu
★ 2.6k
23
votes
23
replies
9.9k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq
removeBatchEffect
batch-effect
edger
updated 28 days ago by
Ram
43k • written 5.4 years ago by
iraia.munoa
▴ 130
23
votes
12
replies
2.0k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 11 months ago by
Ram
43k • written 3.9 years ago by
David Langenberger
11k
23
votes
4
replies
39k
views
bcftools compressing and indexing vcf files
sequence
bcftools
vcf
index
updated 6 months ago by
GenoMax
142k • written 5.7 years ago by
Inquisitive8995
▴ 270
23
votes
9
replies
7.1k
views
What 3Rd Generation Sequencing Methods Are Out There
next-gen-sequencing
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Istvan Albert
100k
23
votes
12
replies
30k
views
9 follow
Extract Alignment From Very Large Bam File
bam
updated 3 months ago by
Ram
43k • written 12.0 years ago by
Plantae
▴ 390
23
votes
11
replies
4.9k
views
7 follow
Code golf: detecting homopolymers of length N in the (human) genome
code golf
fasta
homopolymer
repeat
updated 29 days ago by
Ram
43k • written 5.0 years ago by
WouterDeCoster
47k
22
votes
17
replies
4.0k
views
Tool:
epic: new ChIP-Seq caller based on the SICER algorithm
ChIP-Seq
updated 10 months ago by
Ram
43k • written 8.1 years ago by
endrebak
▴ 960
22
votes
10
replies
8.8k
views
9 follow
fastq compression tools of choice
fastq
compression
updated 12 weeks ago by
Xi
• 0 • written 8.7 years ago by
Richard
▴ 590
22
votes
14
replies
25k
views
11 follow
searching reads with a certain sequence in fastq file
grep
fastq
updated 10 months ago by
elina2410
• 0 • written 9.1 years ago by
sumithrasank75
▴ 140
22
votes
14
replies
10k
views
11 follow
Alternatives To Liftover
liftover
genome
mapping
updated 9 months ago by
cmdcolin
★ 3.8k • written 12.5 years ago by
woemler
▴ 170
22
votes
8
replies
2.0k
views
10 follow
Forum:
Is there any online course for bioinformatics right now or in the next two or three months?
online-course
mooc
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Eugenie
▴ 50
1,000 results • Page
6 of 20
Recent Votes
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
A: How To Merge Two Fastq.Gz Files?
Answer: Annotating file using bcftools
Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
Convert fastq.gz to fastq.bgz
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Answer: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
From the marker genes of each cluster, we can determine whether the cluster belongs to human or mouse. Human genes are all capitalized, whi…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
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▴ 10
Thanks a lot. It is almost what I need but not all. From your script, I can get information that how much degree different samples contri…
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sorry, this isn't a sequence search but search by id ...
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![enter image description here][1]Hi, this is the list/ excel I am uploading ( coverage.xlsx ) ![enter image description here][1] [1…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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There has been some spam bots in this thread which we cleaned up, you might still get notifications on it, just ignore.
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You're lucky that the senior developer @rob is often around, so you probably get your experts answer soon.
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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I think the issue is that there is some contamination of groups. If you plot a PCA or MDS you see that there is a clear separation between …
Comment: What's next after GATK variant calling pipeline?
by
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The link didn't work for me. After getting variants from HaplotypeCaller, there are a lot of different options for follow-up analyses, but …
Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
by
ATpoint
82k
That having said, linked paper and its authors developed the csaw package over at Bioconductor that uses a window approach to avoid peak ca…
Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
by
Ian
6.0k
Really interesting answer. I had missed that paper and will digest it asap. I usually use DiffBind, but recently have been looking into p…
Comment: Annotating file using bcftools
by
kl
▴ 10
It worked with this `bcftools index -t $DATADIR/cpro_imputed_hrcgrch37.R2_0.3.vcf.gz` bcftools annotate \ -a $RefGenomes/All_2018…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
This is true. However, there are a number of studies that have done bioinformatics analysis in whole blood to see if there is a possibility…
Comment: ggrepel function: geom_text_repel()
by
sooni
▴ 20
Thank you for help! I solved the probelm with the package.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
I have checked the quality of the arrays using PCA and Boxplot (images attached) and some of the samples may deviate a little but perhaps n…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
the nt database was extracted, and this is latest version of nt database in ncbi and blastn with version 2.15. I used many query file.fast…
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