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1,000 results • Page 6 of 20
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23
votes
19
replies
4.3k
views
7 follow
Tool: Big Browser : a new genom browser in development
genome-browser
updated 11 months ago by 44k • written 8.2 years ago by ★ 2.4k
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 44k • written 3.9 years ago by 11k
23
votes
12
replies
2.8k
views
Genes encoded on both strands of DNA?
Genes strand
updated 8 months ago by 44k • written 2.1 years ago by ▴ 160
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 10 months ago by 44k • written 11.6 years ago by ▴ 140
23
votes
13
replies
2.0k
views
11 follow
Blog: Don't choose Novogene for your sequencing projects
Illumina Novaseq NGS sequencing
updated 10 months ago by ▴ 90 • written 10 months ago by • 0
23
votes
4
replies
39k
views
bcftools compressing and indexing vcf files
sequence bcftools vcf index
updated 6 months ago by 142k • written 5.7 years ago by ▴ 270
23
votes
9
replies
7.1k
views
What 3Rd Generation Sequencing Methods Are Out There
next-gen-sequencing
updated 6 months ago by 44k • written 14.1 years ago by 100k
23
votes
18
replies
1.5k
views
Forum: Versioning of Blast DB and Reproducible Research
database blast reproducible-research
updated 11 months ago by 44k • written 4.0 years ago by ▴ 60
23
votes
10
replies
12k
views
Tool: ggtree: phylogenetic tree visualization and annotation
ggtree phylogeny visualization
updated 11 months ago by 44k • written 7.9 years ago by ★ 2.6k
23
votes
23
replies
10.0k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq removeBatchEffect batch-effect edger
updated 5 weeks ago by 44k • written 5.4 years ago by ▴ 130
23
votes
11
replies
2.1k
views
9 follow
Forum: file and directory management best practices
file-management
updated 11 months ago by 44k • written 3.8 years ago by ▴ 140
23
votes
8
replies
9.4k
views
6 follow
How Do I Map, Align, And Plot My Solid Results?
galaxy rna solid
updated 7 months ago by 44k • written 14.4 years ago by ▴ 920
23
votes
11
replies
5.0k
views
7 follow
Code golf: detecting homopolymers of length N in the (human) genome
code golf fasta homopolymer repeat
updated 5 weeks ago by 44k • written 5.0 years ago by 47k
23
votes
14
replies
5.4k
views
What Bioinformatics Software Is There, Written In D?
programming software
updated 11 months ago by 44k • written 12.8 years ago by ★ 1.3k
23
votes
15
replies
5.9k
views
7 follow
Looking For Linux Vendors To Order A Centos/Ubuntu Based Webserver To Host Bioinformatics Apps
linux server
updated 7 months ago by 44k • written 14.2 years ago by 18k
23
votes
21
replies
9.1k
views
9 follow
fastest UMAP method
UMAP R
updated 6 months ago by ★ 27k • written 4.6 years ago by ▴ 30
23
votes
18
replies
12k
views
7 follow
Fasta header trimming
sequence
updated 9 months ago by • 0 • written 7.3 years ago by ▴ 50
23
votes
12
replies
30k
views
9 follow
Extract Alignment From Very Large Bam File
bam
updated 4 months ago by 44k • written 12.0 years ago by ▴ 390
23
votes
13
replies
11k
views
11 follow
Tutorial: Setting up Aspera Connect (ascp) on Linux and macOS
ascp aspera
updated 6 months ago by • 0 • written 23 months ago by 82k
22
votes
13
replies
7.3k
views
7 follow
Bioinformatics Webinar/Seminar
webinar seminar
updated 11 months ago by 44k • written 13.2 years ago by ★ 3.3k
22
votes
21
replies
4.9k
views
7 follow
Quick Programming Challenge: Calculate Common And Unique Regions From A List Of Chromosome Segments
programming
updated 6 months ago by 44k • written 14.1 years ago by 18k
22
votes
18
replies
6.3k
views
about batch correction in scRNA-seq
scRNA scRNA-seq batch-effect
updated 5 weeks ago by 44k • written 4.6 years ago by ★ 1.4k
22
votes
8
replies
6.6k
views
Tool: BioTuring Browser: Making single-cell sequencing data in published studies really accessible!
scRNA-Seq single-cell
updated 11 months ago by 44k • written 5.7 years ago by ▴ 580
22
votes
14
replies
28k
views
7 follow
removing batch effects using ComBat and SVA
SVA ComBat R Batch-effect
updated 7 weeks ago by 44k • written 8.0 years ago by ▴ 280
22
votes
7
replies
25k
views
What Does The "N50" Mean?
assembly
updated 6 months ago by 44k • written 14.1 years ago by ★ 1.1k
22
votes
12
replies
1.9k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 44k • written 4.4 years ago by ▴ 520
22
votes
20
replies
4.9k
views
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
sam bam bqsr
updated 11 months ago by 44k • written 5.6 years ago by ▴ 150
22
votes
10
replies
8.8k
views
9 follow
fastq compression tools of choice
fastq compression
updated 3 months ago by • 0 • written 8.7 years ago by ▴ 590
22
votes
14
replies
25k
views
11 follow
searching reads with a certain sequence in fastq file
grep fastq
updated 10 months ago by • 0 • written 9.1 years ago by ▴ 140
22
votes
8
replies
37k
views
8 follow
Merging/Concatenating Vcf Files
vcftools snp indel
updated 9 months ago by ▴ 330 • written 11.8 years ago by ▴ 840
22
votes
8
replies
8.8k
views
7 follow
Gene Expression: Clustering Co-Expressed Genes
gene clustering microarray
updated 6 months ago by 44k • written 14.1 years ago by 11k
22
votes
15
replies
10k
views
12 follow
Alternatives To Liftover
liftover genome mapping
updated 4 days ago by • 0 • written 12.5 years ago by ▴ 170
22
votes
17
replies
4.0k
views
Tool: epic: new ChIP-Seq caller based on the SICER algorithm
ChIP-Seq
updated 11 months ago by 44k • written 8.2 years ago by ▴ 960
22
votes
16
replies
12k
views
6 follow
List All The Tools Or Write A Script To Validate That A Sequence Only Contains Letters From A Given Alphabet
dna sequence
updated 7 months ago by 44k • written 14.2 years ago by ★ 1.0k
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 44k • written 4.1 years ago by ▴ 50
21
votes
9
replies
23k
views
9 follow
Building Snpeff Database
vcftools snp gatk
updated 8 months ago by 44k • written 11.8 years ago by ▴ 840
21
votes
13
replies
3.3k
views
11 follow
Biology Database Project
programming dataset
updated 11 months ago by • 0 • written 12.3 years ago by ▴ 10
21
votes
13
replies
11k
views
8 follow
Blast Motif With Regular Expression ?
blast motif
updated 6 months ago by 44k • written 14.1 years ago by ▴ 80
21
votes
26
replies
9.8k
views
11 follow
Tutorial: Create de novo repeat library
de-novo repeat annotation
updated 10 weeks ago by ▴ 30 • written 4.5 years ago by 8.6k
21
votes
12
replies
3.7k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
4 months ago by Ram 44k
21
votes
7
replies
12k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 months ago by ▴ 100 • written 8.1 years ago by 11k
21
votes
9
replies
13k
views
8 follow
List all available databases for ANNOVAR
annovar
updated 9 months ago by • 0 • written 8.0 years ago by ★ 2.5k
21
votes
18
replies
1.8k
views
Forum: Is it safe to keep our data in github
github
updated 11 months ago by 44k • written 4.0 years ago by ▴ 70
21
votes
7
replies
16k
views
6 follow
GFA to Fasta file
sequence
updated 4 months ago by ▴ 40 • written 8.5 years ago by ▴ 90
21
votes
11
replies
11k
views
Tool: Segemehl: A Fast One-Stop-Shop Mapping Tool
mapping next-gen
updated 11 months ago by 44k • written 11.7 years ago by 11k
21
votes
15
replies
8.9k
views
10 follow
To What Degree Could We Determine Whether A Gene Is Expressed?
fpkm rna-seq
updated 11 months ago by ★ 1.2k • written 10.2 years ago by ▴ 210
21
votes
11
replies
2.6k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 6 months ago by 22k • written 14 months ago by ▴ 150
21
votes
12
replies
8.8k
views
10 follow
How To Find A 28Bp 'Primer' Sequence In A Genome?
sequence genome primer
updated 7 months ago by 44k • written 14.2 years ago by ▴ 530
21
votes
20
replies
9.7k
views
11 follow
Laptops for bioinformatics
hardware Laptops
updated 11 months ago by 4.2k • written 19 months ago by ▴ 40
21
votes
15
replies
2.1k
views
9 follow
Forum: Working abroad without a PhD
career
updated 11 months ago by 44k • written 4.7 years ago by ★ 1.4k
1,000 results • Page 6 of 20
Recent Votes
Answer: Cut&Run and heatmap
Comment: Functional enrichment analysis for unique gene IDs
Answer: How do i calculate the mean of triplicates in a data.frame based on pattern?
How do i calculate the mean of triplicates in a data.frame based on pattern?
C: snpEff assigned all variants as modifier intergenic
A: Problem in indexing toplevel genome with HISAT2
C: The Biostar Handbook. A bioinformatics e-book for beginners.
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Recent Replies
Comment: txt file to bigwig by ATpoint 82k
Please stop asking questions in existing threads. Delete these two comments and open a new question with all the necessary details to under…
Comment: Venter Genome Vcf by Jeremy Leipzig 22k
there are some violations in this VCF: - Invalid count number, with fixed count the number should be 1 or higher: key=INFO name=TSA type=St…
Comment: Cut&Run and heatmap by sogand • 0
Hi all, I am new to cut&run or any peak-related analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt …
Comment: Functional enrichment analysis for unique gene IDs by Pegasus ▴ 100
Since the locus-tags are unclassified, I used the CDS instead of the locus-tags to retrive their ensembl IDs using ensembl bacteria website…
Comment: samtools mpileup error - 1 samples in 1 input files by Damla • 0
Could you find a solution to your problem?
Comment: txt file to bigwig by sogand • 0
Hi all, I am new to these kind of analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt files that are r…
Answer: Help me with Heatmap by MolGeek ▴ 50
Hello! So, what is the correct design ? You will have to ask yourself, what do you want to compare? WT vs mut? If so it will be strain. 2…
Answer: Help me with simple data for RNA seq by swbarnes2 14k
1) you have to say what question you are actually asking. There are few different designs that would address different questions. 2) work…
Comment: identify the coordinate for coding and non_coding region. by Ghada • 0
mmmm I am not sure. This is how I generate my consnsus sequence # Get consensus fastq file samtools mpileup -uf KT992094.1.fasta…
Comment: identify the coordinate for coding and non_coding region. by GenoMax 142k
Why do you have those N's at the beginning of the sequence? If the remainder of the sequence matches 100% then the initial N's may be wrong…
Answer: Salmon vs Kallisto vs RSEM by Rob 6.6k
It's nice that you've gone ahead and done some analysis of these results and their differences on your data yourself. These more general qu…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID by Mike Smith ★ 2.0k
In this location there is an "entrez" file which maps ensembl IDs to Entrez. It's probably as definitive as you're going to find: https://…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID by Anya • 0
Tried it just recently with almost the same results. 456 out of 496 IDs for protein-coding genes returned as "NA" even though I can see NCB…
Answer: Download All The Bacterial Genomes From Ncbi by 2284046470 • 0
wget https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt awk -F '\t' '{if($12=="Complete Genome" && $11=…
Answer: How do i calculate the mean of triplicates in a data.frame based on pattern? by dariober 14k
I'm a happy user of [data.table](https://rdatatable.gitlab.io/data.table/): ``` library(data.table) dat <- structure(list(sgrna = c("Cont…
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