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1,000 results • Page
2 of 20
Sort: Votes
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Views
Votes
Replies
12
votes
8
replies
3.0k
views
How to change depth of sequence in RNA-seq fastq files
depth of sequence
RNA-Seq
6.9 years ago by
statfa
▴ 740
12
votes
8
replies
1.0k
views
Align 16S sequence to a reference
16S
sequence
alignment
updated 14 months ago by
Matthias Zepper
4.2k • written 14 months ago by
A_heath
▴ 160
12
votes
13
replies
2.5k
views
Gene Expression and Systems Biology (homework)
gene
homework
updated 12 months ago by
Ram
41k • written 8.4 years ago by
sarathkurichiyil
• 0
12
votes
28
replies
2.4k
views
Calculating the expression level of genes
Gene expression
RNA-Seq
R
5.5 years ago by
Za
▴ 140
12
votes
21
replies
2.9k
views
Calculate disease risk based on the genoytype of some SNPs?
SNP
prs
gwas
PRSice
Plink
updated 4.3 years ago by
Biostar
20 • written 4.4 years ago by
Miguel
▴ 30
12
votes
10
replies
4.0k
views
Speed up BLASTp vs NCBI nr database
blast
7.5 years ago by
biotech
▴ 570
12
votes
14
replies
5.3k
views
bedtools intersect error?
ChIP-Seq
bedtools
intersect
4.8 years ago by
star
▴ 350
11
votes
22
replies
3.6k
views
No significant DEG: A request to double check my commands for limma.
limma
differential gene expression
covariates
4.6 years ago by
RNAseqer
▴ 250
11
votes
10
replies
10k
views
Extracting from tophat outputs reads pairs and splice-junctions with a single best match
TOPHAT
RNA-Seq
updated 23 months ago by
Ram
41k • written 9.3 years ago by
trakhtenberg
▴ 160
11
votes
12
replies
1.2k
views
Need help changing RNA-seq code from histat aligner into Star aligner please.
RNA-Seq
3.4 years ago by
screadore
▴ 20
11
votes
2
replies
1.4k
views
Concept behind p-value correction?
RNA-Seq
protemics
genome
R
4.3 years ago by
WUSCHEL
▴ 720
11
votes
11
replies
873
views
6 follow
Doubt regarding dna sequence length
genome
sequencing
sequence
3.6 years ago by
lokeshp14cs24
• 0
11
votes
7
replies
3.1k
views
Estimating Mean Inner Distance
tuxedo
tophat
RNA-Seq
7.1 years ago by
CF
▴ 50
11
votes
6
replies
6.1k
views
Merging raw Illumina FASTQ files with snakemake
snakemake
illumina
paired-end reads
6.4 years ago by
Jokhe
▴ 140
11
votes
10
replies
2.6k
views
6 follow
Genomic statistics from gtf
gene
gtf
5.5 years ago by
plebaninora
• 0
11
votes
15
replies
2.6k
views
How do I get the read counts for a specific exon
bam
exon
updated 5.7 years ago by
Ram
41k • written 5.7 years ago by
b10hazard
▴ 30
11
votes
10
replies
5.5k
views
Best mapping software to generate BAM file
BAM
mapping
updated 6.0 years ago by
Biostar
20 • written 6.2 years ago by
Anand Rao
▴ 600
11
votes
10
replies
1.5k
views
Most fishes lay eggs, some are live-bearing, How to find related genes to these different charachteristics?
gene
reproduction
evolution
alignment
updated 7.2 years ago by
Biostar
20 • written 7.2 years ago by
Farbod
★ 3.4k
11
votes
29
replies
9.1k
views
SummarizedExperiment nrow differs from ncol
DESeq2
SummarizedExperiment
updated 2.1 years ago by
Ram
41k • written 9.5 years ago by
Parham
★ 1.6k
11
votes
6
replies
3.7k
views
bcftools isec -n operators
bcftools
intersect
updated 2.3 years ago by
Ram
41k • written 3.9 years ago by
Begonia_pavonina
▴ 120
11
votes
9
replies
2.3k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 11 months ago by
Ram
41k • written 8.5 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
11
votes
11
replies
5.3k
views
6 follow
How to get work experience in Bioinformatics
work experience
python
genome
sequence
5.8 years ago by
ishackm
▴ 110
11
votes
11
replies
2.6k
views
Error of Groups in R
affy
limma
oligo
bioconductor
R
updated 7.6 years ago by
Biostar
20 • written 7.6 years ago by
12021560-040
▴ 70
11
votes
24
replies
4.9k
views
BWA mem skip orientation
assembly
genome
alignment
next-gen
4.6 years ago by
williamsbrian5064
▴ 500
11
votes
4
replies
2.5k
views
10 to 1000X speedup of BWA read alignment trough compressive mapping: MIT CORA
bwa
fastq
alignment
compression
updated 7.4 years ago by
Biostar
20 • written 7.6 years ago by
William
★ 5.2k
11
votes
5
replies
1.1k
views
Differential expression analysis - issue with replicating results
rnaseq
DESeq2
R
bioconductor
updated 2.0 years ago by
ATpoint
78k • written 2.0 years ago by
suzanne rein
▴ 10
10
votes
8
replies
5.9k
views
Software To Calculate Power Of Exome Sequencing?
exome
statistics
updated 12.2 years ago by
Neilfws
49k • written 12.2 years ago by
Liyf
▴ 300
10
votes
7
replies
1.1k
views
Can two mates have different file size?
sequencing
fastq
5.3 years ago by
marongiu.luigi
▴ 690
10
votes
4
replies
1.2k
views
How to pipe samtools mileup with varscan trio caller?
varscan
samtools
pipe
2.9 years ago by
DareDevil
★ 3.3k
10
votes
25
replies
3.2k
views
The interpretation of PCA
DESeq2
R
PCA
updated 5.4 years ago by
Biostar
20 • written 5.4 years ago by
Za
▴ 140
10
votes
11
replies
8.8k
views
How to adjust my manhattan plot to look better?
qqman
manhattan
R
updated 18 months ago by
Ram
41k • written 8.7 years ago by
SheelS
▴ 40
10
votes
10
replies
1.8k
views
Minor allele frequency
GWAS
SNPs
Alleles
updated 5.1 years ago by
Biostar
20 • written 7.0 years ago by
alessandrotestori7
▴ 420
10
votes
14
replies
4.5k
views
ATAC-seq data and deepTools: Small detail with impact on output
bigwig
read-length
deeptools
ATAC-seq
updated 5 months ago by
Ram
41k • written 3.8 years ago by
gable_works
▴ 50
10
votes
7
replies
3.5k
views
What is Pathway Analysis?
database
analysis
ontology
pathway
updated 5 months ago by
Ram
41k • written 7.6 years ago by
Pranavathiyani G
▴ 330
10
votes
15
replies
1.5k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
5 months ago by
Chris
▴ 230
10
votes
2
replies
496
views
any script that can do this task
shell-script
updated 20 months ago by
Ram
41k • written 20 months ago by
Confused_human
▴ 10
10
votes
19
replies
3.0k
views
What is a difference between uniprot and 'nr. Non-redundant GenBank...'?
Genebank
blast
UniProt
updated 2.5 years ago by
GenoMax
136k • written 2.6 years ago by
matt
▴ 20
10
votes
6
replies
2.6k
views
Understanding Supplementary reads.
Bowtie2
MEM
BWA
Dragen
updated 22 months ago by
Istvan Albert
99k • written 22 months ago by
kiran
• 0
10
votes
5
replies
6.9k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 16 months ago by
Ram
41k • written 8.3 years ago by
seta
★ 1.8k
10
votes
15
replies
5.9k
views
DIAMOND blast imported into MEGAN6 has no taxonomic assignment
blast
MEGAN6
Taxonomy
DIAMOND
7.0 years ago by
Farbod
★ 3.4k
10
votes
15
replies
5.8k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 8 months ago by
Ram
41k • written 5.2 years ago by
marongiu.luigi
▴ 690
10
votes
11
replies
1.5k
views
How to identify dysregulated pathways using Support Vector machine (SVM)?
SVM
5.0 years ago by
Chaimaa
▴ 260
10
votes
6
replies
790
views
RNA seq, secreted protein
protein
gene
secreted
updated 4 months ago by
Joe
21k • written 12 months ago by
Rob
▴ 160
10
votes
11
replies
4.5k
views
Trouble Installing Genometools-1.5.1 On My Mac Ox
genome
protein-structure
9.8 years ago by
inadamj
▴ 60
10
votes
9
replies
1.8k
views
How to improve fastq quality based on fastqc output ?
RNA-Seq
5.6 years ago by
Angelique
▴ 10
10
votes
2
replies
2.7k
views
Standalone Blast Issue
blast
11.5 years ago by
chlazaris
• 0
10
votes
13
replies
5.5k
views
How to identify DE lncRNA from RNA Seq Data?
RNA-Seq
lncrna
6.8 years ago by
Vasu
▴ 740
10
votes
23
replies
2.2k
views
Two simillarly annotated sequence has no alignment similarity. Why?
blast
alignment
gene
updated 6.0 years ago by
GenoMax
136k • written 6.0 years ago by
Farbod
★ 3.4k
10
votes
1
reply
3.4k
views
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
RNA-Seq
qc
updated 16 months ago by
Ram
41k • written 8.5 years ago by
Niek De Klein
★ 2.6k
10
votes
1
reply
3.9k
views
Assessing The Quality Of Mirna Rnaseq Data
mirna
updated 10.0 years ago by
Biostar
20 • written 10.7 years ago by
Ashutosh Pandey
12k
1,000 results • Page
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