Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
412 results • Page
4 of 9
Sort: Views
Rank
Views
Votes
Replies
23
votes
2
replies
5.9k
views
Tutorial:
Extracting genomic feature sequences from GTF/GFF files with AGAT
extract
GTF
GFF
sequence
updated 20 months ago by
eggrandio
▴ 40 • written 3.1 years ago by
Juke34
8.6k
6
votes
3
replies
5.7k
views
Tutorial:
High Throughput Sequence Analysis With R And Bioconductor
bioconductor
updated 15 months ago by
Ram
43k • written 11.9 years ago by
Istvan Albert
100k
6
votes
11
replies
5.7k
views
6 follow
Tutorial:
Add count numbers to headers in a fasta file
genome
updated 15 months ago by
Ram
43k • written 7.4 years ago by
wu.zhiqiang.1020
▴ 50
10
votes
4
replies
5.7k
views
Tutorial:
Unsupervised clustering on gene expression data
gene-expression
clustering
RNA-seq
9 months ago by
Hamid Ghaedi
3.2k
20
votes
6
replies
5.7k
views
Tutorial:
Open Targets and programmatic access
open-targets
disease
API
drug
updated 14 months ago by
Ram
43k • written 7.7 years ago by
Denise CS
★ 5.2k
6
votes
0
replies
5.6k
views
Tutorial:
How to download GEO data Quickly and easily
geo
RNA-Seq
R
data-mining
14 months ago by
Novogene
▴ 420
9
votes
2
replies
5.5k
views
Tutorial:
From Data import to Normalization in Microarray Analysis using in R (Part I)
gene
R
updated 13 months ago by
Ram
43k • written 7.9 years ago by
majuang66
▴ 140
23
votes
8
replies
5.4k
views
Tutorial:
A Practical (And Opinionated) Guide To Analyzing Human Methylation 450K Data
450K
methylation
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
brentp
24k
12
votes
4
replies
5.4k
views
Tutorial:
*FREE course* Bioinformatics for Biologists: An Introduction to Linux, Bash Scripting, and R
linux
R
updated 15 months ago by
Ram
43k • written 3.3 years ago by
garden_giessen
▴ 130
5
votes
3
replies
5.4k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 14 months ago by
toxin08x
• 0 • written 6.6 years ago by
jmzeng1314
▴ 140
0
votes
2
replies
5.4k
views
Tutorial:
Install AMOS on Ubuntu 13.10
sequencing
alignment
software-error
next-gen
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
Medhat
9.7k
7
votes
0
replies
5.3k
views
Tutorial:
Mothur Analyzing 16S Of Ngs High Through-Put Sequencing
next-gen
updated 15 months ago by
Ram
43k • written 12.0 years ago by
Shuixia100
▴ 120
3
votes
2
replies
5.3k
views
Tutorial:
Reorder Vcf Files
vcf
updated 14 months ago by
Ram
43k • written 11.0 years ago by
chris.mit7
▴ 60
6
votes
10
replies
5.3k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR
dna-methylation
updated 14 months ago by
Ram
43k • written 6.2 years ago by
dec986
▴ 380
13
votes
3
replies
5.1k
views
Tutorial:
Video: Visualization of whole genome DNA methylation data in IGB
Bismark
BS-Seq
RNA-Seq
IGB
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Nowlan Freese
▴ 860
12
votes
1
reply
5.1k
views
Tutorial:
RepSeq data processing and analysis
immunology
tcr
repseq
sequencing
repertoire
updated 19 months ago by
Ram
43k • written 8.8 years ago by
mikhail.shugay
3.5k
6
votes
2
replies
5.0k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
5 months ago by
GenoMax
142k
12
votes
6
replies
5.0k
views
Tutorial:
sharing some naive codes for microarray normalization in R with whom are too new in R alike me
R
updated 22 months ago by
Ram
43k • written 8.3 years ago by
zizigolu
★ 4.3k
10
votes
0
replies
5.0k
views
Tutorial:
Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair (fix PE reads) and reformat (format conversions)
bbmap
updated 14 months ago by
Ram
43k • written 3.3 years ago by
GenoMax
142k
50
votes
3
replies
4.8k
views
Tutorial:
[[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 14 months ago by
Ram
43k • written 5.3 years ago by
ATpoint
82k
3
votes
0
replies
4.8k
views
Tutorial:
Comparing 454, Iontorrent And Miseq
454
miseq
ion-torrent
updated 15 months ago by
Ram
43k • written 12.0 years ago by
Istvan Albert
100k
7
votes
0
replies
4.7k
views
Tutorial:
How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 14 months ago by
Ram
43k • written 10.2 years ago by
Michi
▴ 990
2
votes
0
replies
4.7k
views
Tutorial:
Calculation of TSS Scores for ATAC-seq Data
next-gen-sequencing
updated 14 months ago by
Ram
43k • written 4.8 years ago by
Sael
▴ 20
16
votes
3
replies
4.7k
views
Tutorial:
NCBI blast tutorial
ncbi
blast
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Eric Normandeau
11k
15
votes
4
replies
4.6k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 14 months ago by
Ram
43k • written 3.8 years ago by
Thind amarinder
▴ 340
4
votes
3
replies
4.6k
views
Tutorial:
How to get full taxonomy classification using taxize and myTAI
taxonomy
R
updated 14 months ago by
Ram
43k • written 6.1 years ago by
Daniel
★ 4.0k
1
vote
0
replies
4.6k
views
Tutorial:
Molecular docking, estimating free energies of binding, and a tutorial for how to use AutoDock's semi-empirical force field
free-energy
docking
scoring
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
se.raschka
▴ 150
29
votes
4
replies
4.5k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 14 months ago by
Ram
43k • written 5.3 years ago by
Jean-Karim Heriche
27k
6
votes
3
replies
4.5k
views
Tutorial:
Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment
sequencing
RNA-seq
gene
updated 14 months ago by
Ram
43k • written 5.6 years ago by
contact
▴ 40
10
votes
3
replies
4.5k
views
Tutorial:
Video: Alternative Splicing and Primer Design
RNA-Seq
IGB
updated 16 months ago by
Ram
43k • written 9.7 years ago by
Nowlan Freese
▴ 860
3
votes
4
replies
4.5k
views
Tutorial:
gencore: a tool to reduce sequencing noises by generating consensus reads
consensus
OpenGene
sequencing-noise
updated 12 months ago by
Ram
43k • written 6.0 years ago by
chen
★ 2.5k
9
votes
0
replies
4.4k
views
Tutorial:
Analysis of dbGaP data on the cloud
AWS
dbGaP
Cloud
updated 22 months ago by
Ram
43k • written 8.3 years ago by
Malachi Griffith
20k
16
votes
3
replies
4.4k
views
Tutorial:
Methylation Analysis Tutorial in R_part2
cancer
methylation
RNA-Seq
R
updated 3.2 years ago by
zhuanggj706
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
10
votes
6
replies
4.2k
views
Tutorial:
CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation
corlevelplot
updated 7 weeks ago by
Ram
43k • written 6.2 years ago by
Kevin Blighe
88k
9
votes
3
replies
4.2k
views
Tutorial:
Ht Sequence Analysis With R And Bioconductor By The Bioinformatics Center At Uc Riverside
bioconductor
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
9
votes
9
replies
4.2k
views
Tutorial:
Determine % of reference genome covered by aligned SAM/BAM
reference-coverage
ngs
updated 12 months ago by
Ram
43k • written 6.7 years ago by
Kevin Blighe
88k
6
votes
2
replies
4.2k
views
Tutorial:
GATK method for filtering vcf lines using GT values at all or multisample level.
genome
vcf
genotype
variant-filtration
updated 12 months ago by
Ram
43k • written 7.0 years ago by
kirannbishwa01
★ 1.6k
5
votes
3
replies
4.2k
views
Tutorial:
Chip Seq Review Papers
chip-seq
updated 14 months ago by
Ram
43k • written 11.5 years ago by
prtimilsina
▴ 80
5
votes
1
reply
4.2k
views
Tutorial:
Mini-tutorial: How to fix too-long sequence names in SyMAP
alignment
updated 17 months ago by
Ram
43k • written 8.9 years ago by
Philipp Bayer
8.5k
20
votes
14
replies
4.1k
views
Tutorial:
Video-tutorials: How to get started using EaSeq for interactive ChIP-seq data visualization and exploration (Windows)
ChIP-Seq
visualization
Windows
EaSeq
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Mads Lerdrup
▴ 460
15
votes
1
reply
4.0k
views
Tutorial:
Dealing with nanopore fast5 files compressed with vbz
hdf5
nanopore
fast5
vbz
MinKNOW
updated 20 months ago by
Assa Yeroslaviz
★ 1.8k • written 2.4 years ago by
dariober
14k
7
votes
2
replies
3.9k
views
Tutorial:
How to extract fastq files from SRA data that contains both paired and unpaired reads
fastq-dump
sra
updated 13 months ago by
Ram
43k • written 8.1 years ago by
thomaskuilman
▴ 850
3
votes
2
replies
3.9k
views
Tutorial:
Galaxy Tutorial on ChIP-seq
galaxy
ChIP-Seq
updated 12 months ago by
Ram
43k • written 7.1 years ago by
anton
▴ 30
9
votes
14
replies
3.8k
views
6 follow
Tutorial:
Install required dependencies for GATK4 on remote server without root privilege
gatk
updated 18 months ago by
Angelina_G
▴ 10 • written 2.2 years ago by
thehung92phuyen
▴ 40
3
votes
1
reply
3.8k
views
Tutorial:
Importance of Array Quality Control - arrayQualityMetrics (PART I)
gene
R
updated 13 months ago by
Ram
43k • written 7.9 years ago by
majuang66
▴ 140
10
votes
2
replies
3.7k
views
Tutorial:
Graph visualization with igraph in R
Visualization
igraph
Graph
R
Network
updated 12 months ago by
Ram
43k • written 7.1 years ago by
Jean-Karim Heriche
27k
1
vote
0
replies
3.7k
views
Tutorial:
embarrassingly easy parallel in Python, Perl and R
parallel
updated 21 months ago by
Ram
43k • written 8.5 years ago by
Echo
▴ 70
28
votes
0
replies
3.7k
views
Tutorial:
Building Docker images
singularity
docker
container
22 months ago by
ATpoint
82k
3
votes
0
replies
3.7k
views
Tutorial:
Sorting GFF/GTF files
gtf
gff
updated 14 months ago by
Ram
43k • written 3.8 years ago by
Juke34
8.6k
0
votes
0
replies
3.7k
views
Tutorial:
Park Test for Heteroskedasticity In R Commander
R
Park-Test
updated 12 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
412 results • Page
4 of 9
Recent Votes
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
Comment: Can I perform a correlation test with 3 biological replicates per condition?
Answer: --normalizeUsing RPGC
Answer: Details on salmon index
Answer: Details on salmon index
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
Recent Locations •
All
United States,
1 minute ago
Poland,
1 minute ago
United States,
1 minute ago
Memphis, TN,
1 minute ago
United Kingdom,
4 minutes ago
United States,
5 minutes ago
United States,
9 minutes ago
Recent Awards •
All
Supporter
to
Negar
• 0
Popular Question
to
carlopecoraro2
★ 2.5k
Scholar
to
GenoMax
142k
Popular Question
to
ben@f
▴ 20
Popular Question
to
Jalil Sharif
▴ 80
Popular Question
to
biology_inform
▴ 50
Scholar
to
nd48
▴ 20
Recent Replies
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
Can you try this? library(dplyr) seuratobj@meta.data <- seuratobj@meta.data %>% mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
Thank you for the response but it does not change anything.
Comment: Merge clusters in Seurat UMAP
by
bk11
★ 2.4k
I have not tested but you could try something like below- seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0 seuratobj$seur…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
I know about it, isn't there a simple C++ static binary?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★ 2.9k
needle is great! but it does not handle sequences of 100k or so.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
by
txema.heredia
▴ 130
The point is that you need to feed the ambient algorithm a clustering list as input. This way, it checks for genes present in the soup vs g…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
swbarnes2
14k
Wait, so the magnitudes of the PCs are in the thousands? That's not normal for RNASeq.
Comment: Help with VG Toolkit: VCF Output is Empty
by
Jordan M Eizenga
▴ 460
What do you get if you use `vg stats -a` on the GAM file?
Comment: About runing Pilon on individual chromosomes when polish draft genome assembly
by
sansan_96
▴ 90
Hello, What approach could you recommend for a large genome (3Gb) with about 10k scaffolds? I'm having problems with RAM when processing t…
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
by
e.r.zakiev
▴ 210
Very good question and analysis. I personally only tried SoupX so can't weigh in on the comparison. This might be not really the issue here…
Comment: Is there any way to modify this pie chart ?
by
marco.barr
▴ 120
Try following the same logic as the guide which adds the labels about halfway through each pie slice value. Check column's name in script b…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
sorry for that, this is first time i use it.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank sir, i will check it again
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
Ok, I will response to you here as soon as possible.
Traffic: 2140 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6