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378 results • Page 3 of 8
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10
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15
replies
2.2k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 11 months ago by 22k • written 14 months ago by ★ 1.6k
10
votes
8
replies
3.1k
views
6 follow
Forum: Cancer research for computer science student
cancer research computer-science
updated 7 months ago by • 0 • written 6.5 years ago by ▴ 70
10
votes
7
replies
2.3k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 24 months ago by ▴ 20
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
10
votes
4
replies
5.8k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 11 months ago by 43k • written 5.0 years ago by • 0
10
votes
6
replies
2.2k
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
reference paper
updated 11 months ago by 43k • written 5.8 years ago by ▴ 140
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
9
votes
10
replies
1.7k
views
Forum: Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences data-analysis
updated 12 months ago by 43k • written 6.1 years ago by ★ 1.3k
9
votes
1
reply
7.3k
views
Forum: Master in statistics or bioinformatics
masters career statistics
updated 11 months ago by 43k • written 10.0 years ago by ▴ 50
9
votes
11
replies
3.3k
views
7 follow
Forum: Fields with biggest demand for bioinformatics?
career
updated 11 months ago by 43k • written 5.3 years ago by ▴ 200
9
votes
10
replies
17k
views
8 follow
Forum: Open Source Bioinformatics projects for beginners
Open-Source Beginners
updated 3 months ago by • 0 • written 6.3 years ago by ▴ 40
9
votes
10
replies
1.3k
views
6 follow
Forum: What's more clear, loops or functions?
R
updated 11 months ago by 43k • written 5.6 years ago by ▴ 110
9
votes
6
replies
1.4k
views
Forum: New Aligner Tool - Would you be interested in this ?
ChIP-Seq alignment Assembly next-gen rna-seq
updated 12 months ago by 43k • written 6.1 years ago by ▴ 30
9
votes
8
replies
5.2k
views
Forum: R or python, which one do you prefer in analysing scRNAseq datasets?
R RNA-Seq python
updated 12 months ago by 43k • written 6.0 years ago by • 0
9
votes
14
replies
2.4k
views
Forum: MS Bioinformatics Project
assembly sequencing alignment R SNP
updated 12 months ago by 43k • written 6.1 years ago by ▴ 10
9
votes
6
replies
2.0k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
9
votes
6
replies
1.5k
views
Forum: How to start my career in Bioinformatics
career
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
8
votes
6
replies
2.5k
views
Forum: How do you organize sequence data (FASTQs)?
RNA-Seq sequencing
updated 12 months ago by 43k • written 6.1 years ago by ▴ 280
8
votes
4
replies
1.8k
views
Forum: Unsolved Topics in Bioinformatics
bioinformatics
updated 12 months ago by 43k • written 6.1 years ago by ▴ 40
8
votes
7
replies
872
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 12 weeks ago by ▴ 120 • written 3 months ago by • 0
8
votes
1
reply
7.3k
views
Forum: What are chromatin states ?
genome ChIP-Seq
3 months ago by rohitsatyam102 ▴ 860
8
votes
6
replies
2.9k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
8
votes
4
replies
2.7k
views
Forum: SNP calling in 2018
variant gatk SNP
updated 12 months ago by 43k • written 6.2 years ago by ▴ 640
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
8
votes
9
replies
3.7k
views
8 follow
Forum: How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by 43k • written 5.5 years ago by ★ 1.1k
7
votes
7
replies
1.9k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 4 weeks ago by ★ 2.5k • written 4 weeks ago by • 0
7
votes
2
replies
793
views
Forum: How to follow a particular post on Biostars?
meta
updated 11 months ago by 43k • written 4.5 years ago by ★ 4.0k
7
votes
20
replies
2.1k
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR RNA-Seq TopHat
updated 12 months ago by 43k • written 3.3 years ago by ▴ 10
7
votes
4
replies
2.0k
views
Forum: Bioinformatics / Computational Biology PhD
Computational-Biology bioinformatics PhD
updated 10 months ago by 43k • written 8.2 years ago by • 0
7
votes
9
replies
1.5k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
6 months ago by UT_FAN ▴ 40
7
votes
4
replies
1.5k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 43k • written 4.4 years ago by ▴ 20
7
votes
5
replies
1.8k
views
Forum: Which is better: webgestalt vs david?
webgestalt david
updated 11 months ago by 43k • written 5.2 years ago by ★ 9.4k
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
7
votes
8
replies
779
views
Forum: Bioinformatics career transition
career forum
updated 9 weeks ago by ★ 16k • written 9 weeks ago by ▴ 20
7
votes
7
replies
5.0k
views
Forum: Filtering out chromosomes from reference genome
RNA-Seq Alignment
updated 12 months ago by 43k • written 6.0 years ago by 5.3k
7
votes
6
replies
3.1k
views
Forum: transition to bioinformatics
career wet-lab
updated 12 months ago by 43k • written 5.9 years ago by • 0
7
votes
6
replies
773
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 4 months ago by 43k • written 4 months ago by ▴ 20
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
7
votes
4
replies
1.9k
views
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy
updated 11 months ago by 43k • written 5.6 years ago by • 0
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
7
votes
5
replies
957
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 43k • written 4.1 years ago by ▴ 20
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.5 years ago by 8.2k
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 7 months ago by 43k • written 7 months ago by ▴ 10
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 30
7
votes
4
replies
1.2k
views
Forum: Specific question on torturing the data until it confesses
ipa gene-set-enrichment statistics
updated 12 months ago by 43k • written 3.4 years ago by ▴ 330
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.5 years ago by ▴ 80
7
votes
3
replies
1.3k
views
Forum: Is it still recommended to avoid macOS Big Sur?
mac
updated 12 months ago by 43k • written 3.4 years ago by ▴ 210
7
votes
4
replies
2.2k
views
Forum: How hard it is to get a bioinformatics degree in one country but find a career in another country?
career Masters
updated 12 months ago by 43k • written 6.0 years ago by ▴ 10
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
378 results • Page 3 of 8
Recent Votes
A: Peaks And Nearby Genes
Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Answer: TFs and Gene databases
A: Is there a software that can compare phylogenetic trees to each othe (face to fa
Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
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Recent Replies
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: how to treat the replicates while performing WGCNA by andres.firrincieli 3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated by alanh ▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data? by Zhenyu Zhang ★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by Ram 43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs by BATMAN • 0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
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