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1,000 results • Page
5 of 20
Sort: replies
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Replies
2
votes
15
replies
1.2k
views
Manipulate refseq database
ncbi
database
nt
refseq
updated 4.3 years ago by
Biostar
20 • written 4.3 years ago by
anasofiamoreira94
▴ 80
11
votes
15
replies
2.9k
views
How do I get the read counts for a specific exon
bam
exon
updated 6.2 years ago by
Ram
43k • written 6.2 years ago by
b10hazard
▴ 30
0
votes
15
replies
2.0k
views
compare two NCBI ftp tables
table
NCBI
updated 3.0 years ago by
Ram
43k • written 3.0 years ago by
Debut
▴ 20
10
votes
15
replies
6.3k
views
convert fasta/gb to vcf
fasta
vcf
genbank
gff
updated 14 months ago by
Ram
43k • written 5.6 years ago by
marongiu.luigi
▴ 710
0
votes
15
replies
2.4k
views
pathway analysis tools for xenopus
pathways
omics
xenopus
updated 7.9 years ago by
EagleEye
7.5k • written 7.9 years ago by
mike
▴ 90
1
vote
15
replies
6.1k
views
How to Extract Specific Region on Bam file
Nanopore
HG38
Rna-Seq
Genome
updated 2.9 years ago by
Kevin Blighe
88k • written 2.9 years ago by
santos48
▴ 40
4
votes
15
replies
4.0k
views
Paired-read alignment length from BAM/SAM file
bam
sam
paired-read
alignment
6.9 years ago by
Soumitra Pal
▴ 10
5
votes
15
replies
1.6k
views
NGS Sequencing depths
next-gen
sequencing
gene
7.3 years ago by
sliproach
▴ 10
3
votes
15
replies
3.2k
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker
annotation
snap
gene prediction
genomics
updated 2.7 years ago by
jaredbernard
▴ 30 • written 4.2 years ago by
mrmrwinter
▴ 30
1
vote
15
replies
2.8k
views
Copy Number Analysis on single file
CNV
updated 4.8 years ago by
Kevin Blighe
88k • written 4.8 years ago by
user31888
▴ 130
6
votes
15
replies
1.6k
views
The Best Cloud Solution For Genomics
cloud
data-sharing
genomics
workflow
updated 22 months ago by
Ram
43k • written 23 months ago by
davidmaimoun
▴ 50
2
votes
15
replies
4.7k
views
Error when indexing a bcf file
vcf
bcf
5.8 years ago by
Famf
▴ 30
3
votes
15
replies
2.1k
views
Overlapping regions in a BED file
regions
BED
Sequence
exons
annotation
22 months ago by
Matej
• 0
0
votes
15
replies
3.4k
views
bcftools multiple samples
snp
4.5 years ago by
evelyn
▴ 230
6
votes
15
replies
8.5k
views
Strand specific protocol for bowtie2 alignment
bowtie2
rnaseq
alignment
RNA-Seq
updated 2.5 years ago by
Ram
43k • written 8.5 years ago by
nalandaatmi
▴ 100
5
votes
15
replies
5.4k
views
Annotation with snpEFF
annotation
vcf
snpeff
extractFields
updated 5.9 years ago by
Biostar
20 • written 5.9 years ago by
NB
▴ 960
3
votes
15
replies
2.4k
views
RNA Seq Analysis:Feature Counts are zero
RNA-Seq
feature counts
updated 3.9 years ago by
Biostar
20 • written 3.9 years ago by
Genomics
▴ 20
0
votes
15
replies
3.3k
views
how to make a .bam file from fastQ for RNA-seq ion torrent with BBmap
RNA-Seq
6.6 years ago by
genya35
▴ 40
0
votes
15
replies
3.2k
views
SAMFormatException: Did not inflate expected amount error
WES
updated 2.5 years ago by
greekkey
▴ 20 • written 2.9 years ago by
smrutimayipanda
▴ 20
1
vote
15
replies
3.7k
views
Install Lefse in Ubuntu 12
install
lefse
microbiome
5.9 years ago by
goh
▴ 10
7
votes
15
replies
2.1k
views
cufflinks in loop
rna-seq
RNA-Seq
genome
updated 5.9 years ago by
finswimmer
16k • written 5.9 years ago by
suny.bio
• 0
6
votes
15
replies
3.1k
views
Why GSVA returns a matrix with fewer gene-sets?
microarray
GSVA
updated 2.4 years ago by
Christopher Walker
▴ 70 • written 6.2 years ago by
arronar
▴ 280
2
votes
15
replies
2.2k
views
to get each covariate with PC loading in PCA
RNA-seq
PCA
5.4 years ago by
Grace_G
▴ 20
4
votes
15
replies
3.3k
views
Adding Multiple readgroups to BAM file
GATK
ReadGroups
8.1 years ago by
vakul.mohanty
▴ 270
9
votes
15
replies
1.4k
views
Construction of single sequence assembly out of contigs
Contigs
Bacteria
Genome
WGS
5 months ago by
analyst
▴ 50
1
vote
15
replies
4.4k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome
alignment
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Aurelie MLB
▴ 360
1
vote
15
replies
1.7k
views
Single Cell RNA Seq
scTransform
Harmony
scRNAseq
Seurat
9 months ago by
scRNA2023
• 0
5
votes
15
replies
1.9k
views
Testing uniform distribution of SNPs across chromosome
uniform
vcf
SNP
5.0 years ago by
misterie
▴ 110
2
votes
15
replies
1.6k
views
How to call all the allele in samples
SNP
6.1 years ago by
Kritika
▴ 260
20
votes
15
replies
30k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 21 months ago by
Ram
43k • written 8.4 years ago by
dam4l
▴ 200
0
votes
15
replies
2.2k
views
Chromosome accession numbers correspond to which chromosome?
bam
chromosome
bed
18 months ago by
amy__
▴ 160
10
votes
15
replies
1.8k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
11 months ago by
Chris
▴ 280
2
votes
15
replies
4.2k
views
How to interpret reads mapped to genome from samtools flagstat vs TopHat align_summary.txt ?
RNA-Seq
8.1 years ago by
Vasu
▴ 770
2
votes
15
replies
1.6k
views
from protein to tRNA combinations
RNA-Seq
rna-seq
written 3.4 years ago by
shiningsky000
• 0
0
votes
14
replies
809
views
frma normalization
affybatch
frma
mcp-counter
3 months ago by
michelafrancesconi9
▴ 20
4
votes
14
replies
1.2k
views
remove white space in fastq file
fastq
updated 5 months ago by
GenoMax
142k • written 5 months ago by
gkarere
• 0
0
votes
14
replies
1.6k
views
Fastqc error: Cannot encode phred score
RNA-Seq
3.5 years ago by
tanukitries
• 0
1
vote
14
replies
3.4k
views
How to convert Haplotypes file to PLINK format data
R
plink
updated 12 months ago by
Ram
43k • written 6.0 years ago by
bha
▴ 80
1
vote
14
replies
2.0k
views
Can't Make Sense Of Gene Symbols
gene symbol
gene ontology
entrez
myGene
python
5.7 years ago by
sinifdosyalari12h
▴ 20
2
votes
14
replies
6.0k
views
Identifying UMIs from fastq files
sequencing
miRNA seq
6.0 years ago by
hothriananya
▴ 70
2
votes
14
replies
4.8k
views
differential expression volcano plot
R
rna-seq
sequencing
4.4 years ago by
michelle.piquet
▴ 60
5
votes
14
replies
2.0k
views
Fastqc genome reads
genome
fastqc
updated 2.3 years ago by
ATpoint
82k • written 2.3 years ago by
Ak
▴ 60
2
votes
14
replies
2.6k
views
RNA seq- without a control
RNA-Seq
next-gen
deseq2
updated 6.4 years ago by
Devon Ryan
104k • written 6.4 years ago by
Biocode_user
▴ 30
0
votes
14
replies
3.0k
views
NCBI Genome Remapping Service- clinical remap
SNP
co-ordinate remapping
updated 5.9 years ago by
Ram
43k • written 5.9 years ago by
Sudhir Jadhao
▴ 70
7
votes
14
replies
1.5k
views
How to Blast with multiple species - Phylogenetic Analysis
ChIP-Seq
alignment
sequence
4.0 years ago by
dimitrischat
▴ 210
0
votes
14
replies
2.9k
views
hisat2 alignment showing 0% aligned but sam file is 6GB in size.
hisat2
alignment
updated 2.7 years ago by
Istvan Albert
100k • written 2.7 years ago by
Priyanka
▴ 10
0
votes
14
replies
2.4k
views
how to identify protein protein interactions
proteomics
7.9 years ago by
Learner
▴ 280
5
votes
14
replies
7.2k
views
Duplicate/identical reads in fastq file
sequencing
fastq
5.4 years ago by
cpad0112
21k
5
votes
14
replies
8.0k
views
Microrna Adapter Trimming
updated 10.5 years ago by
Fabio Marroni
★ 3.0k • written 10.5 years ago by
xiaojuhu13
▴ 150
4
votes
14
replies
2.7k
views
Is it possible to annotate single genes by snpeff
snp
vcf
updated 10 months ago by
Ram
43k • written 6.8 years ago by
misbahabas
▴ 70
1,000 results • Page
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Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
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Please do a few simple Google searches before asking others for help.
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This post does not fit the theme of this forum.
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Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
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For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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Great, thank you!
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This is unhelpful and doesn't answer my question.
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It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
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Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
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Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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