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I know this is an old post, but I experienced the same issue using rRNA depletion kit and found this paper https://www.nature.com/articles…
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That's interesting from a Norwegian perspective. You also may find [SalmoBase][1] useful.
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Related past thread for reference: https://www.biostars.org/p/9613794/ , in case you know about the programs mentioned.
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Thank you I will try this!
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Thanks,
I will look for another tools.
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If the program is not respecting limits you are setting then you may need to dive into code to see why that is happening. It may or may not…
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