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461 results • Page
3 of 10
Sort: Votes
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Votes
Replies
14
votes
11
replies
6.8k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 11 months ago by
Ram
43k • written 4.9 years ago by
chen
★ 2.5k
13
votes
6
replies
1.2k
views
Forum:
To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security
diagnostics
DNA-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
David Langenberger
11k
13
votes
11
replies
4.7k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Batu
▴ 250
13
votes
7
replies
9.4k
views
Forum:
The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 11 months ago by
Ram
43k • written 6.8 years ago by
lakhujanivijay
5.8k
13
votes
4
replies
1.3k
views
Forum:
The shortcoming of shiny app in building webserver
R
shiny
webserver
updated 11 months ago by
Ram
43k • written 4.6 years ago by
harrypotterandsbt
▴ 120
13
votes
18
replies
3.2k
views
6 follow
Forum:
Bioinformatics independent study group
Proteomic
RNA-Seq
Genomic
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Leite
★ 1.3k
13
votes
7
replies
1.3k
views
Forum:
Feedback for my python package to combine results from multiple classifiers
annotation
protein
python
machine-learning
updated 10 months ago by
Ram
43k • written 3.7 years ago by
fred.s.kremer
▴ 110
12
votes
2
replies
3.0k
views
Forum:
List of genome annotation tools (>140)
gene
genome
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Juke34
8.6k
12
votes
4
replies
2.0k
views
Forum:
Update: CRISPR off-target effects causing unexpected mutations - good science or media hype?
off-target
CRISPR
updated 11 months ago by
Ram
43k • written 6.9 years ago by
BioinfGuru
★ 1.7k
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 10 months ago by
Ram
43k • written 4.1 years ago by
scolobs
• 0
12
votes
5
replies
2.6k
views
Forum:
We Need Your Input! Help Get Information For The Informatics Community And Get A Free Gift Card!
algorithm
ngs
updated 10 months ago by
Ram
43k • written 10.9 years ago by
BioPlanet
▴ 30
12
votes
12
replies
3.0k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 11 months ago by
Ram
43k • written 5.9 years ago by
padgaus
▴ 50
12
votes
4
replies
1.6k
views
Forum:
Bioinformatics and biotechnology market in future.
genome
next-gen
updated 11 months ago by
Ram
43k • written 4.7 years ago by
mona11224
• 0
12
votes
0
replies
1.9k
views
Forum:
Free Bioinformatics Courses(Curriculum)
ossu
course
Curriculum
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Leite
★ 1.3k
12
votes
7
replies
7.1k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 5 weeks ago by
dsull
★ 5.9k • written 2.6 years ago by
hamarillo
▴ 70
12
votes
14
replies
2.4k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.9 years ago by
Gabriel Wajnberg
▴ 70
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 8 months ago by
joey
▴ 10
11
votes
5
replies
6.4k
views
Forum:
Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS
HPC
SDSC
Torque
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
11
votes
6
replies
1.5k
views
Forum:
Posting a preprint paper on biostars.com
preprint
updated 11 months ago by
Ram
43k • written 5.5 years ago by
statfa
▴ 760
11
votes
5
replies
1.5k
views
Forum:
What bioinformatic training?
training
RNA-Seq
illumina
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Peter Horbatz
▴ 150
11
votes
13
replies
4.5k
views
6 follow
Forum:
NGS Data storage solutions for small organisations or big labs
big-data
HTS
storage
NGS
metagenomics
updated 11 months ago by
Ram
43k • written 4.9 years ago by
bioinfo
▴ 830
11
votes
8
replies
1.7k
views
Forum:
Bioinformatics cores pricing model
pricing-models
core
Bioinformatics-services
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Bioinfo_2006
▴ 160
11
votes
7
replies
6.6k
views
Forum:
Using Graphics Processing Units (GPUs) in bioinformatics
algorithm
GPU
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Denis
▴ 310
11
votes
5
replies
4.8k
views
Forum:
Bioinformatics Workstation Suggestions
RNA-Seq
next-gen
workstation
updated 11 months ago by
Ram
43k • written 4.9 years ago by
akh22
▴ 110
11
votes
9
replies
2.4k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
ATpoint
82k
11
votes
9
replies
2.3k
views
Forum:
Survey: help define Gencode and NCBI primary transcripts
refseq
ensembl
gencode
ncbi
transcript
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
10
votes
8
replies
3.1k
views
6 follow
Forum:
Cancer research for computer science student
cancer
research
computer-science
updated 6 months ago by
SANDHYA
• 0 • written 6.5 years ago by
mhasa006
▴ 70
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
10
votes
6
replies
2.2k
views
Forum:
How to acknowledge in the paper a reference genome that hasn't been published yet?
reference
paper
updated 11 months ago by
Ram
43k • written 5.7 years ago by
ciemanek
▴ 140
10
votes
6
replies
1.3k
views
6 follow
Forum:
Pros and cons to do biomedical research in pharmaceutical company
industry
career
academia
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Shicheng Guo
★ 9.4k
10
votes
10
replies
1.7k
views
Forum:
Doctor looking fertility for a collaborator for text mining on pubmed
text-mining
fertility
pubmed
updated 11 months ago by
Ram
43k • written 6.4 years ago by
jeromebouaziz
• 0
10
votes
4
replies
5.8k
views
Forum:
Bioinformatics: Which language should I learn
programming
updated 11 months ago by
Ram
43k • written 5.0 years ago by
MEHAR ALI RAZA
• 0
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Mozart
▴ 330
10
votes
7
replies
2.2k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
10
votes
11
replies
4.2k
views
7 follow
Forum:
What made you interested in Bioinformatics?
career
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
9
votes
10
replies
17k
views
8 follow
Forum:
Open Source Bioinformatics projects for beginners
Open-Source
Beginners
updated 12 weeks ago by
Saransh
• 0 • written 6.3 years ago by
Eugenia84
▴ 40
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
DriesB
▴ 110
9
votes
8
replies
5.1k
views
Forum:
R or python, which one do you prefer in analysing scRNAseq datasets?
R
RNA-Seq
python
updated 11 months ago by
Ram
43k • written 6.0 years ago by
wt215
• 0
9
votes
6
replies
1.4k
views
Forum:
New Aligner Tool - Would you be interested in this ?
ChIP-Seq
alignment
Assembly
next-gen
rna-seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Andrew_MacGregor
▴ 30
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 11 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
9
votes
14
replies
2.4k
views
Forum:
MS Bioinformatics Project
assembly
sequencing
alignment
R
SNP
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Moneeb Bajwa
▴ 10
9
votes
6
replies
1.9k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 7 months ago by
ATpoint
82k • written 17 months ago by
dlaehnemann
▴ 30
9
votes
1
reply
7.3k
views
Forum:
Master in statistics or bioinformatics
masters
career
statistics
updated 10 months ago by
Ram
43k • written 10.0 years ago by
indeci
▴ 50
9
votes
3
replies
3.2k
views
Forum:
Why doesn't Swift have an active bioinformatics community project like rust-bio, Biogo and BioJulia?
Swift
updated 11 months ago by
Ram
43k • written 6.3 years ago by
stevin
• 0
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 10 months ago by
Ram
43k • written 3.7 years ago by
Sashi G
▴ 10
9
votes
11
replies
3.3k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioinformaticsLad
▴ 200
8
votes
4
replies
1.8k
views
Forum:
Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by
Ram
43k • written 6.1 years ago by
BioICoder
▴ 40
8
votes
7
replies
6.4k
views
6 follow
Forum:
Bioinformatic or bioinformatics?
spelling
updated 11 months ago by
Ram
43k • written 6.6 years ago by
jon.brate
▴ 310
8
votes
15
replies
2.4k
views
7 follow
Forum:
How to identify your analytic data is true?
RNA-Seq
ChIP-Seq
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Hughie
▴ 80
8
votes
11
replies
1.8k
views
Forum:
What makes a good bionformatics prediction service from the point of user experience?
server
prediction-service
updated 11 months ago by
Ram
43k • written 6.5 years ago by
aquaq
▴ 40
461 results • Page
3 of 10
Recent Votes
Answer: Verify if all the components of a pathway are present in a genomes
Answer: p-value in CIBERSORT
Answer: Can I have multiple active GDC download tokens?
Answer: Can I have multiple active GDC download tokens?
Comment: Can I have multiple active GDC download tokens?
Comment: Programmatically retrieving positions of protein active site residues
Comment: Programmatically retrieving positions of protein active site residues
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Comment: Post-imputation plot
by
LChart
3.9k
I would pull out the variants with panel_freq ~ 1 - upload_freq and min(panel_freq, upload_freq) < 0.4. I would check if these are G/C or A…
Comment: Telescope issue
by
eleven11
• 0
Hello the output is A01940:33:GW2208142379th:3:1317:24126:3505 355 chr14 16651125 0 150M = 17034150 122900 GCTAACAGAGTTGAACCTTTCTATTG…
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
Looking at the [code here][1] `bundle_uuid` seems to be related to the submissions to HCA. Samples that ran on multiple lanes seem to have …
Comment: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
this is very true and increasingly true as time goes forward. thanks for supplementing this post with your own :-)
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
jeffrey.maurer.informatics
• 0
Thank you, but I've already checked out that site to see if I was missing anything and I don't see any answers to my questions there.
Answer: p-value in CIBERSORT
by
Aspire
▴ 320
You have not explicitly specified the number of permutations (which are used to calculate the p-value). The default value of the permutatio…
Comment: Telescope issue
by
GenoMax
141k
> CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9954941 Problem appears to be at that line. Can you …
Comment: KEGG Pathways
by
Ram
43k
Give us as much detail as you can. What error does it give you?
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
SRA Run Selector shows a better view of the metadata: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761679&o=acc_s%3Aa
Comment: Adjust pvalue in R with different approach give me all different outcome
by
Aspire
▴ 320
- `p.adjust()` is supposed to receive a **numeric vector of p-values**, not a matrix. - It makes no sense to "adjust" just one p-value, …
Comment: Downsampling fastq file
by
marco.barr
▴ 80
I understood where the problem lies. I discussed with my wet lab colleagues (this is part of a bioinformatician's job...) and by showing th…
Comment: Programmatically retrieving positions of protein active site residues
by
me
▴ 760
This question fits in nicely with the [SIB Swiss Institute of Bioinformatics course on Enzyme information in UniProt][1] [1]: https://w…
Answer: Programmatically retrieving positions of protein active site residues
by
me
▴ 760
This can be done via SPARQL at the UniProt.org sparql endpoint PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX fald…
Comment: KEGG Pathways
by
Sudip
• 0
No it does not. Do you know of a way that can help me achieve what I want?
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x
by
GenoMax
141k
UniRef file is 43G compressed so probably will become ~60G when uncompressed. You would likely be looking at at least that much +10-20% GB …
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