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1,000 results • Page
3 of 20
Sort: Views
Rank
Views
Votes
Replies
22
votes
14
replies
28k
views
7 follow
removing batch effects using ComBat and SVA
SVA
ComBat
R
Batch-effect
updated 4 weeks ago by
Ram
43k • written 7.9 years ago by
LJ
▴ 280
54
votes
12
replies
28k
views
12 follow
Out Of Disk Space With Picard Tools ?
picard
updated 22 days ago by
kjngo
• 0 • written 12.1 years ago by
Gabriel R.
★ 2.9k
11
votes
5
replies
28k
views
FastQC with multiple FASTQ files
ngs
fastqc
multiple
updated 7 months ago by
Ram
43k • written 5.9 years ago by
m98
▴ 420
73
votes
27
replies
28k
views
16 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
updated 5 months ago by
snardeli
• 0 • written 10.2 years ago by
Istvan Albert
100k
24
votes
22
replies
27k
views
11 follow
replace fasta headers with another name in a text file
perl
updated 10 months ago by
nr299
• 0 • written 9.9 years ago by
Jemo
▴ 60
46
votes
14
replies
27k
views
12 follow
Which Bioinformatics Tools Are Written In Python
python
updated 10 months ago by
Ram
43k • written 11.8 years ago by
Chen Sun
★ 1.1k
6
votes
23
replies
26k
views
6 follow
devtools Installation error in R (version 3.5.3)?
github
R
phylogeny
devtools
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Kumar
▴ 120
41
votes
13
replies
26k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 9 weeks ago by
CTLong
▴ 110 • written 6.6 years ago by
Sreeraj Thamban
▴ 290
172
votes
34
replies
26k
views
29 follow
Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
r
books
bioconductor
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Michael
54k
17
votes
11
replies
26k
views
7 follow
Computing The Reverse And Complement Of A Sequence With Biopython
biopython
python
sequence
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
48
votes
14
replies
26k
views
8 follow
Gene Network Construction... Web Based Tool
gene-network
updated 10 months ago by
Ram
43k • written 12.9 years ago by
Dataminer
★ 2.8k
22
votes
7
replies
25k
views
What Does The "N50" Mean?
assembly
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Bioch'Ti
★ 1.1k
22
votes
14
replies
25k
views
11 follow
searching reads with a certain sequence in fastq file
grep
fastq
updated 10 months ago by
elina2410
• 0 • written 9.1 years ago by
sumithrasank75
▴ 140
31
votes
14
replies
24k
views
7 follow
Difference between tSNE and PCA analysis
next-gen
rna-seq
updated 11 weeks ago by
Jeremy Leipzig
22k • written 6.3 years ago by
Qingyang Xiao
▴ 160
11
votes
9
replies
24k
views
8 follow
Convert Ensembl Transcript Ids Ensmust To Gene Symbol Using Mygene Module In Python
python
ensembl
updated 9 months ago by
Kermit
▴ 90 • written 10.3 years ago by
hicsuntdrac0nis
▴ 250
26
votes
5
replies
24k
views
BLAST options: max_target_seqs and num_alignments
blast
updated 7 weeks ago by
Lada
▴ 30 • written 9.5 years ago by
biolab
★ 1.4k
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 22 days ago by
Gordon
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
39
votes
15
replies
23k
views
9 follow
How Do I Access And Query Entire Genome Sequences With R
gene
r
updated 6 months ago by
Ram
43k • written 14.2 years ago by
John
▴ 790
21
votes
9
replies
23k
views
9 follow
Building Snpeff Database
vcftools
snp
gatk
updated 8 months ago by
Ram
43k • written 11.7 years ago by
bioinfo
▴ 830
61
votes
51
replies
22k
views
9 follow
Tool:
Efficiently process (view, analize, clip ends, convert, demultiplex, dereplicate) SFF/FastQ files
sff
sequence
fastq
next-gen
updated 10 months ago by
Ram
43k • written 10.1 years ago by
BioApps
▴ 790
27
votes
17
replies
22k
views
8 follow
BioPython: convert fasta to fastq without quality score input file
parsing
phred
fasta
BioPython
fastq
updated 11 months ago by
capemaster
• 0 • written 10.0 years ago by
Josh Herr
5.8k
4
votes
3
replies
22k
views
Error: vector memory exhausted (limit reached?) during Seurat integration datasets
scRNA-seq
Seurat
SCTranform
updated 11 months ago by
Ram
43k • written 4.1 years ago by
davide
▴ 30
60
votes
25
replies
22k
views
17 follow
Which Operating System Do You Prefer For Bioinformatics?
general
subjective
updated 6 months ago by
Ram
43k • written 14.3 years ago by
Giovanni M Dall'Olio
28k
6
votes
5
replies
22k
views
Convert hg19 coordinates to hg38 coordinates
Assembly
updated 4 months ago by
DareDevil
★ 4.3k • written 5.1 years ago by
Chat-ra
▴ 40
54
votes
10
replies
22k
views
10 follow
Finding Common Motifs In Sequences
motif
updated 6 months ago by
Ram
43k • written 14.6 years ago by
Fabio
▴ 130
34
votes
23
replies
21k
views
12 follow
Is there a tool that sorts gtf files?
RNA-Seq
genome
updated 8 months ago by
alejandrogzi
▴ 120 • written 6.1 years ago by
JJ
▴ 680
89
votes
12
replies
21k
views
9 follow
What Do Different Bioinformatics Positions Mean?
career
general
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Yuri
★ 1.7k
28
votes
20
replies
21k
views
7 follow
how do I run repeat masker
repeatmasker
updated 3 months ago by
Andrzej Zielezinski
11k • written 8.4 years ago by
ksi216
▴ 80
8
votes
6
replies
21k
views
6 follow
Subsetting a fasta file using seqinr in R
sequence
R
fasta
updated 11 months ago by
GenoMax
142k • written 9.4 years ago by
henrikkjeldal
▴ 10
6
votes
8
replies
21k
views
Use paste in for loop R
edgeR
R
updated 10 months ago by
Ram
43k • written 7.8 years ago by
Benn
8.3k
17
votes
17
replies
21k
views
13 follow
How To Efficiently Sort A Fastq File By Entry Id?
fastq
illumina
sort
next-gen-sequencing
alignment
updated 4 months ago by
Ram
43k • written 12.4 years ago by
User 9996
▴ 840
45
votes
4
replies
21k
views
Best way to compare two samples in a VCF file
VCF
Variant
Genotype
Comparison
SNP
updated 9 months ago by
Ram
43k • written 7.4 years ago by
Matteo Schiavinato
★ 3.6k
81
votes
27
replies
21k
views
12 follow
ATAC-seq sample normalization
ChIP-Seq
atac-seq
normalization
updated 5 weeks ago by
sgv
• 0 • written 4.4 years ago by
Flo
▴ 240
34
votes
16
replies
20k
views
9 follow
Filtration Of Reads With Length Lower Than 30 From Bam
read
length
bam
updated 21 days ago by
Hagen
▴ 10 • written 10.2 years ago by
filipzembol
▴ 180
2
votes
5
replies
20k
views
FastQC command line usage
command-line
FastQC
linux
CentOS
updated 10 months ago by
Kermit
▴ 90 • written 2.2 years ago by
biology_inform
▴ 50
34
votes
16
replies
20k
views
14 follow
Tutorial:
TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen
GDC
R
TCGA
updated 7 weeks ago by
aUser
▴ 30 • written 7.6 years ago by
martinguerrerog89
▴ 310
52
votes
8
replies
20k
views
6 follow
Fast Interval Intersection Methodologies
genomics
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
4
votes
2
replies
20k
views
Tool:
LinkedIn PubMed Importer
GreaseMonkey
LinkedIn
PubMed
DOI
updated 10 months ago by
Ram
43k • written 8.7 years ago by
Jorge Amigo
14k
0
votes
1
reply
20k
views
What is positives when I blast two sequences?
identity
blast
NCBI
updated 11 months ago by
Ram
43k • written 6.2 years ago by
vincent.bioscience
• 0
11
votes
6
replies
20k
views
6 follow
Remove cells from Seurat based on a list
scRNA-seq
Seurat
updated 10 months ago by
Ram
43k • written 4.0 years ago by
elb
▴ 250
5
votes
7
replies
20k
views
6 follow
VCF To FASTA
next-gen
genetic
genome
updated 8 weeks ago by
seta
★ 1.9k • written 5.3 years ago by
Myo Naung
▴ 10
14
votes
3
replies
20k
views
Tutorial:
Plotting the coverage and depth (Y-axis) statistics of a bam file along the genome (X-axis), using Samtools, awk and R.
genome
plot
coverage
samtools
updated 8 months ago by
William
▴ 30 • written 7.1 years ago by
kirannbishwa01
★ 1.6k
8
votes
5
replies
20k
views
How To Convert .Ped To .Vcf File
vcf
ped
updated 10 months ago by
Ram
43k • written 11.9 years ago by
cbm
▴ 20
16
votes
12
replies
20k
views
to run bowtie on multiple fastq file
bowtie
RNA-Seq
updated 8 months ago by
Ram
43k • written 8.2 years ago by
Kritika
▴ 260
83
votes
20
replies
20k
views
17 follow
How Do Pathway Databases Compare?
pathway
database
subjective
updated 9 months ago by
Peter Karp
▴ 30 • written 13.5 years ago by
Shigeta
▴ 470
76
votes
72
replies
20k
views
19 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
15 days ago by
Kevin Blighe
87k
39
votes
6
replies
19k
views
Tutorial:
Creating chromosome karyotype plot with R and ggplot2
ggplot2
R
chromosome
karyotype
updated 12 months ago by
Ram
43k • written 6.7 years ago by
steve
★ 3.5k
20
votes
16
replies
19k
views
6 follow
Conversion of Gene Name to Ensembl ID
gene
RNA-Seq
R
genome
updated 6 months ago by
Nat.Nataren
▴ 10 • written 4.1 years ago by
bazok
▴ 20
28
votes
11
replies
19k
views
9 follow
Salary For A Bioinformatics Programmer In Europe?
career
updated 11 months ago by
Ram
43k • written 12.7 years ago by
Jeroen Van Goey
2.3k
24
votes
15
replies
19k
views
7 follow
how can I remove duplicated variants from vcf file?
SNP
vcf
updated 8 months ago by
Ram
43k • written 6.8 years ago by
kk.mahsa
▴ 140
1,000 results • Page
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Recent Votes
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
Answer: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: what is another word for a BLAST "hit"?
Comment: How can I merge GFF files together to produce a file with gene functions from bo
Comment: Contig assembly task, errors
Comment: Where to get the following bed file?
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Recent Replies
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
> Here's a few lines from the head of the raw fastq If your files are actually compressed (as their names suggest) then you should not be …
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
GenoMax
142k
If you added the `\` before the `+` then there is no need for it. It makes it appear that the sequences are not in proper fastq format. Ple…
Comment: Tassel 5 GBS: Is there something wrong with my fastqs?
by
Mensur Dlakic
★ 27k
This seems to be the same unanswered question as before, except that its description is split over two threads. You are now forcing us to r…
Answer: what is another word for a BLAST "hit"?
by
dec986
▴ 380
I'll probably go with "matches" even though it doesn't sound as good as just "hit"
Comment: what is another word for a BLAST "hit"?
by
bk11
★ 2.4k
> hits from BLAST hits sequences
Comment: what is another word for a BLAST "hit"?
by
Pierre Lindenbaum
161k
> is there a synonym for hits from BLAST? alignment
Comment: How are score_weights calculated in this code?
by
Ram
43k
Is this ALL the context you can give us?
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
Ram
43k
Where did you copy-paste this from? It looks like an assignment question.
Comment: Contig assembly task, errors
by
rackbersingh
• 0
Hi Phillip, Thanks for sharing you knowledge and funnily enough this really was an amplitude test, but anyways your sharing of knowledge h…
Comment: Can I readmap short reads to rDNA references?
by
GenoMax
142k
If these are short reads and the organisms are related then you are going to have a difficult time classifying the reads.
Comment: extract viral protein of interest from 10k whole viral genomes
by
GenoMax
142k
With a large dataset it is always best to do the search locally (or in the cloud, if you don't have necessary hardware available locally).
Comment: Truncated metadata file report from ENA Portal API
by
Giulia
• 0
Thank you so much for your hint! I'll look into this!
Comment: How to convert Haps file to vcf file?
by
curious
▴ 750
unzip haps then: bin/shapeit \ -convert \ --input-haps {haps_prefix} \ --thread {cpus} \ --output-…
Comment: Can I readmap short reads to rDNA references?
by
aniigodwinn
• 0
Still on this, the reads are from org a, org b, and environmental contaminants. I have a fairly good idea what org b might be but i need to…
Comment: fastq screen aligner no specified.
by
Ximena
• 0
Thank u so much, my OS is linux. I will try your advice.
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