updated 9 months ago by
Ram
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written 12.2 years ago by
Anima Mundi
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2.9k
147
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31
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137k
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26 follow
38
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31
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2.8k
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17
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31
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5.7k
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7
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31
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15k
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updated 2.0 years ago by
Ram
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written 9.2 years ago by
gaelgarcia
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260
14
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31
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5.0k
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10
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31
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24
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31
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updated 13.3 years ago by
lh3
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written 13.3 years ago by
Andrea_Bio
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2.8k
89
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31
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14k
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23 follow
18
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31
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30
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11 follow
78
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31
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6.8k
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Forum:
Do Bad Questions Even Exist?
updated 14 months ago by
Ram
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written 13.2 years ago by
Chris Evelo
10k
3
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31
replies
4.1k
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28
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31
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5.7k
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8 follow
updated 14 months ago by
Ram
43k
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written 10.9 years ago by
Istvan Albert
100k
11
votes
31
replies
7.8k
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3.9 years ago by
moldach686
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90
94
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31
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39k
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17 follow
53
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31
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15 follow
11
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31
replies
14k
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6 follow
45
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31
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9.1k
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updated 21 months ago by
Ram
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written 13.1 years ago by
Michael Barton
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1.9k
14
votes
31
replies
13k
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105
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31
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94k
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18 follow
10
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31
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4.4k
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updated 2.5 years ago by
GenoMax
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written 6.0 years ago by
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18k
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updated 5.0 years ago by
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written 10.3 years ago by
shl198
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440
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31
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3.8k
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updated 5.1 years ago by
pltbiotech_tkarthi
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180
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written 5.4 years ago by
bioinfo456
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150
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30
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updated 7.3 years ago by
Alex Reynolds
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written 7.3 years ago by
spaladug
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3
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30
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11k
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34
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14k
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updated 13.3 years ago by
Obi Griffith
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written 13.7 years ago by
Mike Dewar
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30
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2.4k
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37
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30
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Forum:
Spam In Rss Feeds
updated 14 months ago by
Ram
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written 11.2 years ago by
Madelaine Gogol
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65
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30
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35k
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41
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23k
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updated 21 months ago by
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written 12.9 years ago by
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190
4
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30
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2.3k
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58
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11k
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updated 5 months ago by
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written 14.0 years ago by
Khader Shameer
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83
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30
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updated 22 months ago by
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written 9.0 years ago by
Casey Bergman
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30
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174
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92k
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updated 11 months ago by
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written 7.1 years ago by
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102
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62k
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updated 6 months ago by
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written 14.1 years ago by
Biostar User
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updated 13.1 years ago by
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written 13.1 years ago by
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updated 4.1 years ago by
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written 4.1 years ago by
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updated 2.5 years ago by
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written 11.2 years ago by
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Recent Replies
Comment: Low mapping rate with Salmon
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i.sudbery
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Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
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bk11
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If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
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jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
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I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
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> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
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the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
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I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
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For doing this, should I just look at the log.out.file?
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install.packages("pheatmap")
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Comment: Low mapping rate with Salmon
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Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
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bedtools intersect \
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Comment: Create a new bed file with all pairwise combinations between two other bed files
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J
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The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
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I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
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![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
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