7
votes
18
replies
4.2k
views
1
vote
18
replies
1.4k
views
20
votes
17
replies
5.5k
views
27
votes
17
replies
19k
views
12 follow
1
vote
17
replies
3.6k
views
6.7 years ago by
lakhujanivijay
5.8k
6
votes
17
replies
2.1k
views
6 follow
5.3 years ago by
williamsbrian5064
▴
480
2
votes
17
replies
4.0k
views
0
votes
17
replies
3.3k
views
updated 21 months ago by
Dio
•
0
•
written 5.0 years ago by
giuseppe0525
▴
20
0
votes
17
replies
2.7k
views
updated 2.5 years ago by
Arup Ghosh
3.2k
•
written 2.5 years ago by
trejomarco6
•
0
0
votes
17
replies
4.4k
views
5
votes
17
replies
3.9k
views
9.6 years ago by
14134125465346445
★
3.6k
1
vote
17
replies
5.3k
views
updated 7.5 years ago by
GenoMax
134k
•
written 7.5 years ago by
cacampbell
▴
50
4
votes
17
replies
2.4k
views
updated 5.9 years ago by
Kevin Blighe
86k
•
written 5.9 years ago by
qudrat
▴
100
16
votes
17
replies
2.9k
views
6 follow
5.9 years ago by
dimitrischat
▴
200
0
votes
17
replies
1.2k
views
12
votes
17
replies
4.2k
views
3
votes
17
replies
1.2k
views
7
votes
17
replies
3.4k
views
3
votes
17
replies
2.5k
views
2.5 years ago by
boczniak767
▴
840
0
votes
17
replies
2.4k
views
5.9 years ago by
annette440
•
0
2
votes
17
replies
2.3k
views
22 months ago by
blackadder
▴
30
2
votes
17
replies
4.7k
views
2
votes
17
replies
7.8k
views
7 follow
updated 18 months ago by
todd.ugine
•
0
•
written 2.7 years ago by
merfer0206
•
0
8
votes
17
replies
3.6k
views
5.6 years ago by
Sharon
▴
590
4
votes
17
replies
2.4k
views
20
votes
17
replies
2.4k
views
updated 11 weeks ago by
1769mkc
★
1.1k
•
written 2.6 years ago by
pomodoro_sinensis
▴
110
3
votes
17
replies
6.7k
views
7
votes
17
replies
3.9k
views
9
votes
17
replies
1.9k
views
7.1 years ago by
erincyurtman
•
0
7
votes
17
replies
6.2k
views
1
vote
17
replies
2.1k
views
7
votes
16
replies
3.2k
views
0
votes
16
replies
4.2k
views
3
votes
16
replies
1.1k
views
3
votes
16
replies
11k
views
3
votes
16
replies
3.5k
views
updated 3.1 years ago by
Eugene A
▴
170
•
written 4.5 years ago by
Assa Yeroslaviz
★
1.8k
0
votes
16
replies
4.8k
views
10.3 years ago by
chentong.biology
▴
50
1
vote
16
replies
6.1k
views
updated 4.6 years ago by
Biostar
20
•
written 4.7 years ago by
sunnykevin97
▴
970
0
votes
16
replies
3.4k
views
9
votes
16
replies
1.5k
views
4.9 years ago by
bioinfo456
▴
150
7
votes
16
replies
3.2k
views
3.5 years ago by
Researcher
▴
20
0
votes
16
replies
3.9k
views
updated 14 months ago by
Ram
40k
•
written 8.4 years ago by
bharata1803
▴
550
2
votes
16
replies
1.6k
views
5.5 years ago by
Siavash Salek Ardestani
▴
20
9
votes
16
replies
3.3k
views
6 follow
updated 6 months ago by
Ram
40k
•
written 5.1 years ago by
marongiu.luigi
▴
690
16
votes
16
replies
2.7k
views
5.5 years ago by
bioinfo456
▴
150
9
votes
16
replies
1.1k
views
updated 3.1 years ago by
lieven.sterck
14k
•
written 3.1 years ago by
schlogl
▴
150
0
votes
16
replies
2.1k
views
13
votes
16
replies
5.4k
views
5
votes
16
replies
5.5k
views
4
votes
16
replies
1.8k
views
10 months ago by
barrypraveen
▴
110
Recent Votes
Recent Locations •
All
United States, just now
United States, 2 minutes ago
Russia, 3 minutes ago
Cambridge, MA, 5 minutes ago
United States, 6 minutes ago
Oviedo, 9 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 11 minutes ago
Recent Awards •
All
Popular Question to
langziv
▴
50
Popular Question to
Emily
▴
30
Popular Question to
Bogdan
★
1.4k
Popular Question to
paria
▴
70
Popular Question to
Ahmed.waraky
▴
10
Scholar to
antonioggsousa
2.8k
Recent Replies
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I tried the commands you recommended in the bash/command line. When I tried `find "${bam_directory}" -type f -name "*.bam" | xargs samtools…
Comment: Hugo_Symbol to Entrez ID
by
GenoMax
134k
Can you provide some examples of HUGO ID's you are unable to convert?
Comment: Using STAR aligner to build index of hg38
by
GenoMax
134k
GTF file includes gene models/annotation information.
You could also use a program like `salmon/kallisto` with just human transcriptome to…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Pierre Lindenbaum
157k
then test each files.
find "${bam_directory}" -type f -name "*.bam" | xargs samtools quickcheck
file "${reference_gen…
Answer: Ties in reranked list
by
alserg
▴
840
The problem here is not the ties, but that your gene IDs in the pathway list (ensemble human genes) does not match the names of the stats v…
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I did not use the space between the `-u` flag and the `-o` flag (the blank line) but I did do what you recommended:
# Run CuffDiff wit…
Answer: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Pierre Lindenbaum
157k
how about simply trying:
```
cuffdiff -u "${annotation_gtf}" \
-o "${output_directory}" \
-b "${reference_genome}" \
-p "${num_th…
Comment: Using STAR aligner to build index of hg38
by
Grace
•
0
Yes, I know also need a GTF file. So the GTF file will include RNA information?
Thanks for your answer!!
Comment: STAR Intron Motif Script Gives Segmentation fault Error
by
Y
•
0
I will try and figure it out on my own given what you all have mentioned. Thank you for your time.
Comment: Using STAR aligner to build index of hg38
by
Amitm
★
2.2k
Have you gone through the manual [here][1]. In addition to the genome fasta file, you would also need a GTF file (of gene annotations) to b…
Comment: Highly inflated p-values in GWAS by regenie
by
4galaxy77
2.8k
You still definitely need to include principle components as covariates, even if your data is from the same ethnicity. Not including those …
Answer: How to create structural variants ground truth for alignment of two long-read ge
by
Christophe
•
0
Hi,
D-genies is using minimap2 to align both genomes and minimap2 is chaining local alignments to produce a global one. If the SV are sm…
Comment: Ties in reranked list
by
Hamza
•
0
In this case there are no results in my fgsea object unfortunately
Comment: Genes with promoter and enhancer regions as GTF
by
abis.1819104
•
0
how to generate promoters.bed and enhancer.bed files from gtf file
Comment: Deepvariant variant calling by singularity
by
jeffhsu3
•
0
I am having a similar issue was this ever resolved? Getting this error:
I0922 22:22:08.794076 140356687390528 make_examples_core.py:257] O…
Traffic: 2459 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6