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1,000 results • Page
3 of 20
Sort: replies
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Views
Votes
Replies
2
votes
18
replies
2.1k
views
I need help in this
gene
weblems
alignment
updated 16 months ago by
Ram
41k • written 8.0 years ago by
efosa15
• 0
2
votes
18
replies
2.3k
views
Bwa on multiple processor
np
mpirun
bwa
alignment
23 months ago by
shivangi.agarwal800
▴ 120
14
votes
18
replies
1.4k
views
Clustering in single cell
seurat
single-cell
updated 6 weeks ago by
e.r.zakiev
▴ 170 • written 10 weeks ago by
Chris
▴ 230
4
votes
18
replies
2.8k
views
Inline barcodes in the reverse reads
barcodes
7.1 years ago by
Picasa
▴ 640
0
votes
18
replies
1.3k
views
No gene name after annovar vcf file processing
vcf
annovar
4.1 years ago by
valerie
▴ 100
20
votes
17
replies
5.7k
views
HiSeq 4000 PhiX screening and removal using bbduk
spikein
filtering
bbmap
bbduk
phix
6.3 years ago by
Anand Rao
▴ 620
8
votes
17
replies
3.8k
views
Getting nan value in vcftool relatedness command?
vcftools
relatedness
5.8 years ago by
Sharon
▴ 590
2
votes
17
replies
2.5k
views
Snakemake Megahit error
megahit
Snakemake
2.1 years ago by
blackadder
▴ 30
20
votes
17
replies
2.7k
views
How to add "transcript" feature to a gtf file?
gtf
updated 5 months ago by
1769mkc
★ 1.1k • written 2.8 years ago by
pomodoro_sinensis
▴ 110
3
votes
17
replies
7.3k
views
Removing fastq duplicates
sequence
next-gen
ChIP-Seq
3.0 years ago by
C4
▴ 10
2
votes
17
replies
8.5k
views
7 follow
EXITING: because of fatal INPUT file error: could not open read file
mapping
genome
fastq
STAR
updated 21 months ago by
todd.ugine
• 0 • written 2.9 years ago by
merfer0206
• 0
0
votes
17
replies
4.6k
views
Finding True SNPs after hard filtering on GATK
SNP
updated 14 months ago by
Ram
41k • written 8.2 years ago by
jigarnt
▴ 30
1
vote
17
replies
5.5k
views
BBMap: Mapping Fails
BBTools
BBMap
Mapping
updated 7.7 years ago by
GenoMax
136k • written 7.7 years ago by
cacampbell
▴ 50
1
vote
17
replies
3.9k
views
Error executing bedops convert2bed
bedops
bed
vcf
convert2bed
6.9 years ago by
lakhujanivijay
5.8k
4
votes
17
replies
2.6k
views
Cufflinks analysis and gffread
RNA-Seq
Assembly
updated 6.1 years ago by
Kevin Blighe
86k • written 6.1 years ago by
qudrat
▴ 100
2
votes
17
replies
4.8k
views
Coding Potential Calculator (CPC) error
RNA-Seq
updated 5.7 years ago by
h.mon
35k • written 5.7 years ago by
Janey
▴ 30
27
votes
17
replies
20k
views
12 follow
Dotplot for filtered pathways result
pathways
ggplot2
clusterProfiler
r
dotplot
2.0 years ago by
Leite
★ 1.3k
0
votes
17
replies
3.4k
views
WGCNA error: "Error in cutreeDynamic"
rna-seq
wgcna
software error
R
next-gen
updated 23 months ago by
Dio
• 0 • written 5.2 years ago by
giuseppe0525
▴ 20
3
votes
17
replies
2.7k
views
FAIRE for non-standard cultivar, mapping to reference, MAPQ
sequencing
faire
mapping
2.7 years ago by
boczniak767
▴ 840
2
votes
17
replies
4.2k
views
Problem With Sam To Bam Converison After Alignment Of Scaffolds To Reference
sam
bam
alignment
samtools
updated 9.9 years ago by
Devon Ryan
104k • written 9.9 years ago by
Rohit
★ 1.5k
5
votes
17
replies
4.0k
views
Interpreting Genome_Structural_Correction Block_Bootstrap.Py
statistics
encode
9.8 years ago by
14134125465346445
★ 3.6k
0
votes
17
replies
2.5k
views
Fail running blastdb and blastn on my own computer
blast
6.1 years ago by
annette440
• 0
1
vote
17
replies
2.2k
views
Normalizing BLAST results
blast
updated 6.2 years ago by
Biostar
20 • written 6.3 years ago by
db
• 0
0
votes
17
replies
2.9k
views
I am not able to let R read my file
R
fasta
updated 2.7 years ago by
Arup Ghosh
3.2k • written 2.7 years ago by
trejomarco6
• 0
16
votes
17
replies
3.0k
views
6 follow
RNA seq pipeline
RNA-Seq
6.1 years ago by
dimitrischat
▴ 210
9
votes
17
replies
2.1k
views
Creating intergenic bam file
R
genome
intergenic
alignment
7.3 years ago by
erincyurtman
• 0
7
votes
17
replies
3.6k
views
How to find the differences in aligned bam files
RNA-Seq
6.8 years ago by
1769mkc
★ 1.1k
7
votes
17
replies
4.0k
views
Strange MA-plot using DESeq2
rna-seq
R
deseq2
updated 6.9 years ago by
Biostar
20 • written 7.0 years ago by
stan
▴ 80
3
votes
17
replies
1.3k
views
copy number became inaccurate when downsampling different number fastq reads from a whole fastq file
CNV
DownSample
fastq
copy number not accurate
3.8 years ago by
lffu_0032
▴ 90
4
votes
17
replies
2.5k
views
Any strategy to find out the reason of having unusual Coefficient of Variation (CV) for gene expression data?
microarray
gene-expression
CV
error
4.4 years ago by
Jurat Shahidin
▴ 100
7
votes
17
replies
6.3k
views
HeatMap: how to cluster only the rows and keep order of the heatmap's column labels as same as in the df?
R
gene
genome
5.4 years ago by
WUSCHEL
▴ 720
6
votes
17
replies
2.2k
views
6 follow
Issue with reverting bam file back to fastq files
next-gen
assembly
genome
alignment
5.5 years ago by
williamsbrian5064
▴ 500
12
votes
17
replies
4.5k
views
How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
Python
Newick
phylogenetics
tree
phylogeny
6.2 years ago by
anonymous1192976466
▴ 50
0
votes
17
replies
1.3k
views
Transcripts with no read support
RNA-Seq
alignment
assembly
salmon
3.2 years ago by
Dunois
★ 2.4k
7
votes
16
replies
3.4k
views
How do I get a GFF file
snp
4.5 years ago by
apl00028
▴ 80
0
votes
16
replies
4.4k
views
Issue using MaSuRCA-3.2.6
Assembly
assembler
updated 5.3 years ago by
Biostar
20 • written 5.5 years ago by
Chvatil
▴ 130
3
votes
16
replies
1.3k
views
How to bring all reads to the same length? Any tool?
Read-length
Bed
updated 5 months ago by
Ram
41k • written 3.9 years ago by
Ankit
▴ 400
5
votes
16
replies
4.0k
views
plotting problem with loop in R
R
plot
4.5 years ago by
smyiz
▴ 30
13
votes
16
replies
6.7k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa
samtools
mpileup
4.9 years ago by
DNAngel
▴ 240
2
votes
16
replies
2.8k
views
Enhancing draft genome using 10X data
10X
draft_genome
Assembly
5.3 years ago by
Mostafa
▴ 20
15
votes
16
replies
1.3k
views
ncbi error report log for validate fastq issue
sra-tools
updated 10 weeks ago by
GenoMax
136k • written 10 weeks ago by
1769mkc
★ 1.1k
5
votes
16
replies
3.3k
views
Hisat2 aligner problem
RNA-Seq
ChIP-Seq
alignment
Assembly
software error
4.5 years ago by
ta_awwad
▴ 340
3
votes
16
replies
11k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 6 months ago by
Ram
41k • written 4.7 years ago by
Star
▴ 60
4
votes
16
replies
8.5k
views
STAR - genome indexes generation, genome file not created
RNA-Seq
star
updated 4.3 years ago by
Biostar
20 • written 7.1 years ago by
lu.ne
▴ 70
1
vote
16
replies
2.5k
views
Merging fastq files from two experiments
FASTQ
NGS
updated 4.8 years ago by
Biostar
20 • written 4.9 years ago by
fi1d18
★ 4.2k
9
votes
16
replies
1.7k
views
feature extraction from SNPs in R
R
gene
sequence
SNP
5.1 years ago by
bioinfo456
▴ 150
4
votes
16
replies
5.9k
views
How to count occurrence of numbers in text files using phython
python
excel
counting
writelines
6.9 years ago by
Kachibunny
• 0
2
votes
16
replies
9.9k
views
Tophat with Bowtie2 long index
tophat
bowtie
updated 23 months ago by
Ram
41k • written 9.4 years ago by
BDK_compbio
▴ 140
0
votes
16
replies
5.0k
views
Unable To Delete Tmp Files Of Samtools Sort
samtools
sort
10.6 years ago by
chentong.biology
▴ 50
5
votes
16
replies
2.1k
views
How to extract intron counts from total RNA Sequencing?
featurecounts
RNAseq
htseq
STAR
12 months ago by
barrypraveen
▴ 130
1,000 results • Page
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Answer: Issue softclipping reads when they belong and don't belong to a common amplicon
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Answer: how to remove multiple columns from a file in R
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Thanks @Pierre this is great to know, although it doesn't solve my issue of this being R-self-contained. rsamtools doesn't seem to carry fu…
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Not only opposite case but same case nucleotides are also present in vcf fle. ![enter image description here][1] [1]: /media/images/4…
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